RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ATP13A2Q9NQ11 1180 aa9.05□□□□□ -0.96
SCFD1-209ENST00000553280 ACIN1Q9UKV3 1341 aaKnown RBP9.05□□□□□ -0.96
SCFD1-209ENST00000553280 HDGFL1Q5TGJ6 251 aa9.04□□□□□ -0.96
SCFD1-209ENST00000553280 BPHLQ86WA6 291 aaPredicted RBP9.04□□□□□ -0.96
SCFD1-209ENST00000553280 KCTD17Q8N5Z5 321 aa9.04□□□□□ -0.96
SCFD1-209ENST00000553280 ARMC2Q8NEN0 867 aa9.04□□□□□ -0.96
SCFD1-209ENST00000553280 MAGEB6P1A0A0J9YX57 407 aa9.03□□□□□ -0.96
SCFD1-209ENST00000553280 C11orf95C9JLR9 678 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-209ENST00000553280 GPR37L1O60883 481 aa9.03□□□□□ -0.96
SCFD1-209ENST00000553280 NNTQ13423 1086 aa9.03□□□□□ -0.96
SCFD1-209ENST00000553280 NR6A1Q15406 480 aa9.03□□□□□ -0.96
SCFD1-209ENST00000553280 NBPF14Q5TI25 921 aa9.03□□□□□ -0.96
SCFD1-209ENST00000553280 RETREG2Q8NC44 543 aa9.02□□□□□ -0.97
SCFD1-209ENST00000553280 CAPN5O15484 640 aaPredicted RBP9.01□□□□□ -0.97
SCFD1-209ENST00000553280 BMP1P13497 986 aa9.01□□□□□ -0.97
SCFD1-209ENST00000553280 ADAMTS19Q8TE59 1207 aa9.01□□□□□ -0.97
SCFD1-209ENST00000553280 CARD14Q9BXL6 1004 aa9.01□□□□□ -0.97
SCFD1-209ENST00000553280 ADH1CP00326 375 aa9□□□□□ -0.97
SCFD1-209ENST00000553280 SH3BP5LQ7L8J4 393 aa9□□□□□ -0.97
SCFD1-209ENST00000553280 SH3RF1Q7Z6J0 888 aa9□□□□□ -0.97
SCFD1-209ENST00000553280 MPNDQ8N594 471 aa9□□□□□ -0.97
SCFD1-209ENST00000553280 EPS8L1Q8TE68 723 aa9□□□□□ -0.97
SCFD1-209ENST00000553280 PDE4CQ08493 712 aa8.99□□□□□ -0.97
SCFD1-209ENST00000553280 CDK15Q96Q40 435 aa8.99□□□□□ -0.97
SCFD1-209ENST00000553280 ALG2Q9H553 416 aa8.99□□□□□ -0.97
SCFD1-209ENST00000553280 FKBPLQ9UIM3 349 aa8.99□□□□□ -0.97
SCFD1-209ENST00000553280 SNRPBP14678 240 aaKnown RBP8.98□□□□□ -0.97
SCFD1-209ENST00000553280 WDR4P57081 412 aaKnown RBP8.98□□□□□ -0.97
SCFD1-209ENST00000553280 VAC14Q08AM6 782 aa8.98□□□□□ -0.97
SCFD1-209ENST00000553280 CCDC9Q9Y3X0 531 aaKnown RBP8.98□□□□□ -0.97
SCFD1-209ENST00000553280 TRIM46Q7Z4K8 759 aa8.97□□□□□ -0.97
SCFD1-209ENST00000553280 GPKOWQ92917 476 aaPredicted RBP eCLIP8.97□□□□□ -0.97
SCFD1-209ENST00000553280 PBXIP1Q96AQ6 731 aa8.97□□□□□ -0.97
SCFD1-209ENST00000553280 C1QTNF2Q9BXJ5 285 aa8.97□□□□□ -0.97
SCFD1-209ENST00000553280 NR3C2P08235 984 aa8.96□□□□□ -0.98
SCFD1-209ENST00000553280 SOX11P35716 441 aa8.96□□□□□ -0.98
SCFD1-209ENST00000553280 GRM5P41594 1212 aa8.96□□□□□ -0.98
SCFD1-209ENST00000553280 SRPK2P78362 688 aaKnown RBP8.96□□□□□ -0.98
SCFD1-209ENST00000553280 CFAP70Q5T0N1 1121 aa8.96□□□□□ -0.98
SCFD1-209ENST00000553280 ARHGAP9Q9BRR9 750 aa8.96□□□□□ -0.98
SCFD1-209ENST00000553280 SENP2Q9HC62 589 aa8.96□□□□□ -0.98
SCFD1-209ENST00000553280 TIMP2P16035 220 aa8.95□□□□□ -0.98
SCFD1-209ENST00000553280 FSHRP23945 695 aa8.95□□□□□ -0.98
SCFD1-209ENST00000553280 ERFEQ4G0M1 354 aa8.95□□□□□ -0.98
SCFD1-209ENST00000553280 PDXDC2PQ6P474 469 aa8.95□□□□□ -0.98
SCFD1-209ENST00000553280 VASH1Q7L8A9 365 aaPredicted RBP8.95□□□□□ -0.98
SCFD1-209ENST00000553280 AEBP1Q8IUX7 1158 aa8.95□□□□□ -0.98
SCFD1-209ENST00000553280 TRIM47Q96LD4 638 aa8.95□□□□□ -0.98
SCFD1-209ENST00000553280 PPP1R12CQ9BZL4 782 aa8.95□□□□□ -0.98
SCFD1-209ENST00000553280 ZFAND3Q9H8U3 227 aa8.94□□□□□ -0.98
SCFD1-209ENST00000553280 ZIC2O95409 532 aaPredicted RBP8.93□□□□□ -0.98
SCFD1-209ENST00000553280 RFX1P22670 979 aa8.93□□□□□ -0.98
SCFD1-209ENST00000553280 NR5A1Q13285 461 aa8.93□□□□□ -0.98
SCFD1-209ENST00000553280 TRMT44Q8IYL2 757 aaKnown RBP8.93□□□□□ -0.98
SCFD1-209ENST00000553280 ITPKCQ96DU7 683 aa8.93□□□□□ -0.98
SCFD1-209ENST00000553280 KLF16Q9BXK1 252 aaPredicted RBP8.93□□□□□ -0.98
SCFD1-209ENST00000553280 PALM3A6NDB9 673 aaPredicted RBP8.92□□□□□ -0.98
SCFD1-209ENST00000553280 ZBTB33Q86T24 672 aa8.92□□□□□ -0.98
SCFD1-209ENST00000553280 PNMA1Q8ND90 353 aa8.92□□□□□ -0.98
SCFD1-209ENST00000553280 KIFC2Q96AC6 838 aa8.92□□□□□ -0.98
SCFD1-209ENST00000553280 ZC3H4Q9UPT8 1303 aaKnown RBP8.91□□□□□ -0.98
SCFD1-209ENST00000553280 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.91□□□□□ -0.98
SCFD1-209ENST00000553280 PTK2Q05397 1052 aa8.91□□□□□ -0.98
SCFD1-209ENST00000553280 ZFP42Q96MM3 310 aa8.91□□□□□ -0.98
SCFD1-209ENST00000553280 OCSTAMPQ9BR26 566 aa8.91□□□□□ -0.98
SCFD1-209ENST00000553280 MAP4K5Q9Y4K4 846 aa8.91□□□□□ -0.98
SCFD1-209ENST00000553280 RANGAP1P46060 587 aaPredicted RBP8.9□□□□□ -0.98
SCFD1-209ENST00000553280 MRPL14Q6P1L8 145 aaKnown RBP8.9□□□□□ -0.98
SCFD1-209ENST00000553280 NPM2Q86SE8 214 aaKnown RBP8.9□□□□□ -0.98
SCFD1-209ENST00000553280 SLC10A4Q96EP9 437 aa8.9□□□□□ -0.98
SCFD1-209ENST00000553280 PURBQ96QR8 312 aaKnown RBP8.9□□□□□ -0.98
SCFD1-209ENST00000553280 TFIP11Q9UBB9 837 aaKnown RBP8.9□□□□□ -0.98
SCFD1-209ENST00000553280 SEMA3FQ13275 785 aa8.89□□□□□ -0.99
SCFD1-209ENST00000553280 ADAM32Q8TC27 787 aa8.89□□□□□ -0.99
SCFD1-209ENST00000553280 UCN2Q96RP3 112 aa8.89□□□□□ -0.99
SCFD1-209ENST00000553280 USTQ9Y2C2 406 aa8.89□□□□□ -0.99
SCFD1-209ENST00000553280 LMOD1P29536 600 aaPredicted RBP8.88□□□□□ -0.99
SCFD1-209ENST00000553280 EIF4G2P78344 907 aaKnown RBP eCLIP8.88□□□□□ -0.99
SCFD1-209ENST00000553280 CCDC116Q8IYX3 515 aa8.88□□□□□ -0.99
SCFD1-209ENST00000553280 CSB-PGBD3P0DP91 1061 aa8.87□□□□□ -0.99
SCFD1-209ENST00000553280 SCARF1Q14162 830 aa8.87□□□□□ -0.99
SCFD1-209ENST00000553280 C6orf118Q5T5N4 469 aa8.87□□□□□ -0.99
SCFD1-209ENST00000553280 KCTD15Q96SI1 283 aaPredicted RBP8.87□□□□□ -0.99
SCFD1-209ENST00000553280 NR1H3Q13133 447 aa8.86□□□□□ -0.99
SCFD1-209ENST00000553280 TREML4Q6UXN2 200 aa8.86□□□□□ -0.99
SCFD1-209ENST00000553280 GPSM3Q9Y4H4 160 aa8.86□□□□□ -0.99
SCFD1-209ENST00000553280 SOBPA7XYQ1 873 aa8.85□□□□□ -0.99
SCFD1-209ENST00000553280 PATL2C9JE40 543 aaKnown RBP8.85□□□□□ -0.99
SCFD1-209ENST00000553280 BRD1O95696 1058 aa8.85□□□□□ -0.99
SCFD1-209ENST00000553280 RAB15P59190 212 aa8.85□□□□□ -0.99
SCFD1-209ENST00000553280 PPP1R26Q5T8A7 1209 aaPredicted RBP8.85□□□□□ -0.99
SCFD1-209ENST00000553280 GZF1Q9H116 711 aaPredicted RBP8.85□□□□□ -0.99
SCFD1-209ENST00000553280 MAFBQ9Y5Q3 323 aaPredicted RBP8.85□□□□□ -0.99
SCFD1-209ENST00000553280 EMILIN1Q9Y6C2 1016 aa8.85□□□□□ -0.99
SCFD1-209ENST00000553280 WFS1O76024 890 aa8.84□□□□□ -0.99
SCFD1-209ENST00000553280 ATG7O95352 703 aa8.84□□□□□ -0.99
SCFD1-209ENST00000553280 CDV3Q9UKY7 258 aaKnown RBP8.84□□□□□ -0.99
SCFD1-209ENST00000553280 ZBBXA8MT70 800 aa8.83□□□□□ -1
SCFD1-209ENST00000553280 FBXO45P0C2W1 286 aa8.83□□□□□ -1
SCFD1-209ENST00000553280 BMP2P12643 396 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms