RNA–Protein interactions for RNA: ENST00000553200.1

NR4A1-218, Transcript of nuclear receptor subfamily 4 group A member 1, human

TSL 3

Gene NR4A1, Length 521 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR4A1-218	ENST00000553200	AXIN2	Q9Y2T1	843 aa		33.23	■■■□□ 2.91
NR4A1-218	ENST00000553200	CCDC9	Q9Y3X0	531 aa	Known RBP	33.23	■■■□□ 2.91
NR4A1-218	ENST00000553200	ANKRD26	Q9UPS8	1709 aa		33.22	■■■□□ 2.91
NR4A1-218	ENST00000553200	SPATA31A5	Q5VU36	1347 aa		33.19	■■■□□ 2.9
NR4A1-218	ENST00000553200	SPATA31A7	Q8IWB4	1347 aa		33.19	■■■□□ 2.9
NR4A1-218	ENST00000553200	ABCC6	O95255	1503 aa		33.18	■■■□□ 2.9
NR4A1-218	ENST00000553200	LARP1	Q6PKG0	1096 aa	Known RBP	33.18	■■■□□ 2.9
NR4A1-218	ENST00000553200	CGNL1	Q0VF96	1302 aa		33.18	■■■□□ 2.9
NR4A1-218	ENST00000553200	EVA1C	P58658	441 aa		33.17	■■■□□ 2.9
NR4A1-218	ENST00000553200	BRWD3	Q6RI45	1802 aa		33.16	■■■□□ 2.9
NR4A1-218	ENST00000553200	ZEB1	P37275	1124 aa	Predicted RBP	33.14	■■■□□ 2.9
NR4A1-218	ENST00000553200	SPATA31A1	Q5TZJ5	1347 aa		33.13	■■■□□ 2.89
NR4A1-218	ENST00000553200	MAP3K19	Q56UN5	1328 aa		33.12	■■■□□ 2.89
NR4A1-218	ENST00000553200	SOCS7	O14512	581 aa		33.11	■■■□□ 2.89
NR4A1-218	ENST00000553200	RRS1	Q15050	365 aa	Known RBP	33.11	■■■□□ 2.89
NR4A1-218	ENST00000553200	PEAK1	Q9H792	1746 aa		33.11	■■■□□ 2.89
NR4A1-218	ENST00000553200	FAM98C	Q17RN3	349 aa	Known RBP	33.1	■■■□□ 2.89
NR4A1-218	ENST00000553200	MAP2	P11137	1827 aa	Known RBP	33.09	■■■□□ 2.89
NR4A1-218	ENST00000553200	USP35	Q9P2H5	1018 aa		33.09	■■■□□ 2.89
NR4A1-218	ENST00000553200	THSD7A	Q9UPZ6	1657 aa		33.09	■■■□□ 2.89
NR4A1-218	ENST00000553200	ONECUT3	O60422	494 aa	Predicted RBP	33.08	■■■□□ 2.89
NR4A1-218	ENST00000553200	CRB1	P82279	1406 aa		33.08	■■■□□ 2.89
NR4A1-218	ENST00000553200	WDR17	Q8IZU2	1322 aa		33.06	■■■□□ 2.88
NR4A1-218	ENST00000553200	PER1	O15534	1290 aa	Predicted RBP	33.06	■■■□□ 2.88
NR4A1-218	ENST00000553200	SEPT12	Q8IYM1	358 aa		33.06	■■■□□ 2.88
NR4A1-218	ENST00000553200	IP6K1	Q92551	441 aa		33.06	■■■□□ 2.88
NR4A1-218	ENST00000553200	KNSTRN	Q9Y448	316 aa		33.06	■■■□□ 2.88
NR4A1-218	ENST00000553200	WNK3	Q9BYP7	1800 aa		33.05	■■■□□ 2.88
NR4A1-218	ENST00000553200	AMER1	Q5JTC6	1135 aa	Predicted RBP	33.04	■■■□□ 2.88
NR4A1-218	ENST00000553200	BLM	P54132	1417 aa	Predicted RBP	33.03	■■■□□ 2.88
NR4A1-218	ENST00000553200	HOXC9	P31274	260 aa		33.03	■■■□□ 2.88
NR4A1-218	ENST00000553200	TOM1L2	Q6ZVM7	507 aa		33.03	■■■□□ 2.88
NR4A1-218	ENST00000553200	NSD2	O96028	1365 aa		33.03	■■■□□ 2.88
NR4A1-218	ENST00000553200	ERBB3	P21860	1342 aa		33.02	■■■□□ 2.88
NR4A1-218	ENST00000553200	RGPD2	P0DJD1	1756 aa		33.02	■■■□□ 2.88
NR4A1-218	ENST00000553200	AMPH	P49418	695 aa		33.02	■■■□□ 2.88
NR4A1-218	ENST00000553200	CSB-PGBD3	P0DP91	1061 aa		33.01	■■■□□ 2.87
NR4A1-218	ENST00000553200	ANKRD24	Q8TF21	1146 aa		33.01	■■■□□ 2.87
NR4A1-218	ENST00000553200	EP400	Q96L91	3159 aa		33.01	■■■□□ 2.87
NR4A1-218	ENST00000553200	RTL1	A6NKG5	1358 aa		33	■■■□□ 2.87
NR4A1-218	ENST00000553200	TCP11L2	Q8N4U5	519 aa		33	■■■□□ 2.87
NR4A1-218	ENST00000553200	EMILIN1	Q9Y6C2	1016 aa		33	■■■□□ 2.87
NR4A1-218	ENST00000553200		A0A0G2JS52	829 aa		32.99	■■■□□ 2.87
NR4A1-218	ENST00000553200	TNNT2	P45379	298 aa	Predicted RBP	32.99	■■■□□ 2.87
NR4A1-218	ENST00000553200	MYT1	Q01538	1121 aa		32.99	■■■□□ 2.87
NR4A1-218	ENST00000553200	BARGIN	Q6ZT62	677 aa		32.98	■■■□□ 2.87
NR4A1-218	ENST00000553200	LTV1	Q96GA3	475 aa	Predicted RBP	32.97	■■■□□ 2.87
NR4A1-218	ENST00000553200	FAM208A	Q9UK61	1670 aa	Known RBP	32.97	■■■□□ 2.87
NR4A1-218	ENST00000553200	PARP4	Q9UKK3	1724 aa	Known RBP	32.96	■■■□□ 2.87
NR4A1-218	ENST00000553200	CARD10	Q9BWT7	1032 aa		32.95	■■■□□ 2.87
NR4A1-218	ENST00000553200	THRAP3	Q9Y2W1	955 aa	Known RBP	32.95	■■■□□ 2.87
NR4A1-218	ENST00000553200	FLT4	P35916	1363 aa		32.94	■■■□□ 2.86
NR4A1-218	ENST00000553200	HSP90AB2P	Q58FF8	381 aa		32.93	■■■□□ 2.86
NR4A1-218	ENST00000553200	MORC1	Q86VD1	984 aa		32.93	■■■□□ 2.86
NR4A1-218	ENST00000553200	POLK	Q9UBT6	870 aa		32.93	■■■□□ 2.86
NR4A1-218	ENST00000553200	CC2D1B	Q5T0F9	858 aa	Known RBP	32.91	■■■□□ 2.86
NR4A1-218	ENST00000553200	KRT27	Q7Z3Y8	459 aa		32.91	■■■□□ 2.86
NR4A1-218	ENST00000553200	NLRP2	Q9NX02	1062 aa		32.91	■■■□□ 2.86
NR4A1-218	ENST00000553200	KIF24	Q5T7B8	1368 aa		32.91	■■■□□ 2.86
NR4A1-218	ENST00000553200	LRRC37A3	O60309	1634 aa		32.91	■■■□□ 2.86
NR4A1-218	ENST00000553200	INSR	P06213	1382 aa		32.9	■■■□□ 2.86
NR4A1-218	ENST00000553200	DISP2	A7MBM2	1401 aa		32.89	■■■□□ 2.86
NR4A1-218	ENST00000553200	PPM1G	O15355	546 aa	Predicted RBP	32.89	■■■□□ 2.86
NR4A1-218	ENST00000553200	NPC1L1	Q9UHC9	1359 aa		32.86	■■■□□ 2.85
NR4A1-218	ENST00000553200	CNGB1	Q14028	1251 aa	Predicted RBP	32.86	■■■□□ 2.85
NR4A1-218	ENST00000553200	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.86	■■■□□ 2.85
NR4A1-218	ENST00000553200	SMG6	Q86US8	1419 aa	Known RBP	32.85	■■■□□ 2.85
NR4A1-218	ENST00000553200	FAM182B	Q5T319	152 aa		32.85	■■■□□ 2.85
NR4A1-218	ENST00000553200	NBPF6	Q5VWK0	638 aa		32.8	■■■□□ 2.84
NR4A1-218	ENST00000553200	NBPF4	Q96M43	638 aa		32.8	■■■□□ 2.84
NR4A1-218	ENST00000553200	USHBP1	Q8N6Y0	703 aa		32.78	■■■□□ 2.84
NR4A1-218	ENST00000553200	CDCA7	Q9BWT1	371 aa	Predicted RBP	32.77	■■■□□ 2.84
NR4A1-218	ENST00000553200	IL2RB	P14784	551 aa		32.75	■■■□□ 2.83
NR4A1-218	ENST00000553200	PDE3B	Q13370	1112 aa		32.75	■■■□□ 2.83
NR4A1-218	ENST00000553200	DDB1	Q16531	1140 aa		32.75	■■■□□ 2.83
NR4A1-218	ENST00000553200	DDX10	Q13206	875 aa	Known RBP	32.74	■■■□□ 2.83
NR4A1-218	ENST00000553200	MEGF6	O75095	1541 aa		32.73	■■■□□ 2.83
NR4A1-218	ENST00000553200	EIF4A2	Q14240	407 aa	Known RBP	32.73	■■■□□ 2.83
NR4A1-218	ENST00000553200	TNS2	Q63HR2	1409 aa		32.73	■■■□□ 2.83
NR4A1-218	ENST00000553200	SHANK3	Q9BYB0	1731 aa		32.71	■■■□□ 2.83
NR4A1-218	ENST00000553200	NCAPD2	Q15021	1401 aa		32.7	■■■□□ 2.83
NR4A1-218	ENST00000553200	MTHFS	P49914	203 aa		32.69	■■■□□ 2.82
NR4A1-218	ENST00000553200	SBF2	Q86WG5	1849 aa		32.69	■■■□□ 2.82
NR4A1-218	ENST00000553200	EXOC5	O00471	708 aa		32.68	■■■□□ 2.82
NR4A1-218	ENST00000553200	MARCH10	Q8NA82	808 aa	Predicted RBP	32.68	■■■□□ 2.82
NR4A1-218	ENST00000553200	EYA1	Q99502	592 aa		32.68	■■■□□ 2.82
NR4A1-218	ENST00000553200	TNS1	Q9HBL0	1735 aa	Known RBP	32.66	■■■□□ 2.82
NR4A1-218	ENST00000553200	RGPD1	P0DJD0	1748 aa		32.65	■■■□□ 2.82
NR4A1-218	ENST00000553200	FAM196A	Q6ZSG2	479 aa		32.65	■■■□□ 2.82
NR4A1-218	ENST00000553200	OVOS2	A0A0G2JMS6	1433 aa		32.64	■■■□□ 2.82
NR4A1-218	ENST00000553200	COL3A1	P02461	1466 aa	Predicted RBP	32.61	■■■□□ 2.81
NR4A1-218	ENST00000553200	IGSF1	Q8N6C5	1336 aa		32.6	■■■□□ 2.81
NR4A1-218	ENST00000553200	IL13	P35225	146 aa		32.59	■■■□□ 2.81
NR4A1-218	ENST00000553200	RAPGEF4	Q8WZA2	1011 aa		32.59	■■■□□ 2.81
NR4A1-218	ENST00000553200	PKD1L3	Q7Z443	1732 aa		32.59	■■■□□ 2.81
NR4A1-218	ENST00000553200	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.58	■■■□□ 2.81
NR4A1-218	ENST00000553200	TRIM37	O94972	964 aa		32.58	■■■□□ 2.81
NR4A1-218	ENST00000553200	CCDC125	Q86Z20	511 aa		32.58	■■■□□ 2.81
NR4A1-218	ENST00000553200	PARD3	Q8TEW0	1356 aa		32.58	■■■□□ 2.81
NR4A1-218	ENST00000553200	TAT	P17735	454 aa	Predicted RBP	32.57	■■■□□ 2.8

Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms