RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 BCL9O00512 1426 aa16.97■□□□□ 0.31
CKAP4-202ENST00000552828 CPSF1Q10570 1443 aaKnown RBP16.97■□□□□ 0.31
CKAP4-202ENST00000552828 TRPM1Q7Z4N2 1603 aa16.97■□□□□ 0.31
CKAP4-202ENST00000552828 NUP188Q5SRE5 1749 aa16.97■□□□□ 0.31
CKAP4-202ENST00000552828 ZBTB7CA1YPR0 619 aa16.97■□□□□ 0.31
CKAP4-202ENST00000552828 ROCK2O75116 1388 aaKnown RBP16.97■□□□□ 0.31
CKAP4-202ENST00000552828 BCL11BQ9C0K0 894 aaPredicted RBP16.96■□□□□ 0.31
CKAP4-202ENST00000552828 MARCH10Q8NA82 808 aaPredicted RBP16.95■□□□□ 0.3
CKAP4-202ENST00000552828 CARD10Q9BWT7 1032 aa16.95■□□□□ 0.3
CKAP4-202ENST00000552828 LRRC37A3O60309 1634 aa16.94■□□□□ 0.3
CKAP4-202ENST00000552828 SBNO2Q9Y2G9 1366 aa16.92■□□□□ 0.3
CKAP4-202ENST00000552828 KCNQ2O43526 872 aa16.92■□□□□ 0.3
CKAP4-202ENST00000552828 NEUROD1Q13562 356 aa16.92■□□□□ 0.3
CKAP4-202ENST00000552828 PTF1AQ7RTS3 328 aa16.92■□□□□ 0.3
CKAP4-202ENST00000552828 SPON1Q9HCB6 807 aa16.92■□□□□ 0.3
CKAP4-202ENST00000552828 RGPD3A6NKT7 1758 aaPredicted RBP16.92■□□□□ 0.3
CKAP4-202ENST00000552828 RGPD4Q7Z3J3 1758 aa16.92■□□□□ 0.3
CKAP4-202ENST00000552828 NFAT5O94916 1531 aa16.91■□□□□ 0.3
CKAP4-202ENST00000552828 KTN1Q86UP2 1357 aaKnown RBP16.91■□□□□ 0.3
CKAP4-202ENST00000552828 PROM2Q8N271 834 aa16.91■□□□□ 0.3
CKAP4-202ENST00000552828 ABCC6O95255 1503 aa16.91■□□□□ 0.3
CKAP4-202ENST00000552828 USP31Q70CQ4 1352 aa16.9■□□□□ 0.3
CKAP4-202ENST00000552828 AKAP12Q02952 1782 aa16.89■□□□□ 0.3
CKAP4-202ENST00000552828 CSB-PGBD3P0DP91 1061 aa16.89■□□□□ 0.29
CKAP4-202ENST00000552828 CCDC7Q96M83 1385 aa16.89■□□□□ 0.29
CKAP4-202ENST00000552828 EXOC5O00471 708 aa16.88■□□□□ 0.29
CKAP4-202ENST00000552828 SOX12O15370 315 aa16.88■□□□□ 0.29
CKAP4-202ENST00000552828 ANO8Q9HCE9 1232 aaPredicted RBP16.88■□□□□ 0.29
CKAP4-202ENST00000552828 SBF2Q86WG5 1849 aa16.88■□□□□ 0.29
CKAP4-202ENST00000552828 NINLQ9Y2I6 1382 aa16.87■□□□□ 0.29
CKAP4-202ENST00000552828 CD163L1Q9NR16 1453 aa16.86■□□□□ 0.29
CKAP4-202ENST00000552828 WNK3Q9BYP7 1800 aa16.86■□□□□ 0.29
CKAP4-202ENST00000552828 PPP1R1BQ9UD71 204 aaPredicted RBP16.85■□□□□ 0.29
CKAP4-202ENST00000552828 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.84■□□□□ 0.29
CKAP4-202ENST00000552828 PUS7Q96PZ0 661 aaKnown RBP16.84■□□□□ 0.29
CKAP4-202ENST00000552828 CARD11Q9BXL7 1154 aa16.84■□□□□ 0.29
CKAP4-202ENST00000552828 ERBB3P21860 1342 aa16.84■□□□□ 0.29
CKAP4-202ENST00000552828 TNS2Q63HR2 1409 aa16.84■□□□□ 0.29
CKAP4-202ENST00000552828 TXNRD1Q16881 649 aa16.83■□□□□ 0.28
CKAP4-202ENST00000552828 USP54Q70EL1 1684 aa16.83■□□□□ 0.28
CKAP4-202ENST00000552828 MON2Q7Z3U7 1717 aa16.83■□□□□ 0.28
CKAP4-202ENST00000552828 NME9Q86XW9 330 aa16.83■□□□□ 0.28
CKAP4-202ENST00000552828 PDGFDQ9GZP0 370 aaPredicted RBP16.83■□□□□ 0.28
CKAP4-202ENST00000552828 RGPD5Q99666 1765 aa16.82■□□□□ 0.28
CKAP4-202ENST00000552828 PCGF6Q9BYE7 350 aa16.82■□□□□ 0.28
CKAP4-202ENST00000552828 CASZ1Q86V15 1759 aa16.82■□□□□ 0.28
CKAP4-202ENST00000552828 SLC15A2Q16348 729 aa16.81■□□□□ 0.28
CKAP4-202ENST00000552828 HDGFL2Q7Z4V5 671 aaPredicted RBP16.81■□□□□ 0.28
CKAP4-202ENST00000552828 SLC12A5Q9H2X9 1139 aa16.81■□□□□ 0.28
CKAP4-202ENST00000552828 EDC4Q6P2E9 1401 aaKnown RBP16.8■□□□□ 0.28
CKAP4-202ENST00000552828 YY1P25490 414 aa16.8■□□□□ 0.28
CKAP4-202ENST00000552828 PTGER2P43116 358 aa16.8■□□□□ 0.28
CKAP4-202ENST00000552828 TMC1Q8TDI8 760 aa16.8■□□□□ 0.28
CKAP4-202ENST00000552828 NLRP2Q9NX02 1062 aa16.8■□□□□ 0.28
CKAP4-202ENST00000552828 STK32BQ9NY57 414 aa16.8■□□□□ 0.28
CKAP4-202ENST00000552828 IL2RBP14784 551 aa16.79■□□□□ 0.28
CKAP4-202ENST00000552828 ANKRD24Q8TF21 1146 aa16.79■□□□□ 0.28
CKAP4-202ENST00000552828 TERF2IPQ9NYB0 399 aa16.79■□□□□ 0.28
CKAP4-202ENST00000552828 ZBTB7AO95365 584 aa16.78■□□□□ 0.28
CKAP4-202ENST00000552828 A0A1W2PP64 1363 aa16.77■□□□□ 0.28
CKAP4-202ENST00000552828 DCAF8L1A6NGE4 600 aa16.77■□□□□ 0.28
CKAP4-202ENST00000552828 UTRNP46939 3433 aa16.76■□□□□ 0.27
CKAP4-202ENST00000552828 NHSQ6T4R5 1651 aa16.75■□□□□ 0.27
CKAP4-202ENST00000552828 IP6K1Q92551 441 aa16.75■□□□□ 0.27
CKAP4-202ENST00000552828 ACSBG1Q96GR2 724 aa16.75■□□□□ 0.27
CKAP4-202ENST00000552828 TESK2Q96S53 571 aa16.75■□□□□ 0.27
CKAP4-202ENST00000552828 SGIP1Q9BQI5 828 aa16.75■□□□□ 0.27
CKAP4-202ENST00000552828 MTFR1LQ9H019 292 aa16.75■□□□□ 0.27
CKAP4-202ENST00000552828 ATF5Q9Y2D1 282 aaPredicted RBP16.74■□□□□ 0.27
CKAP4-202ENST00000552828 TONSLQ96HA7 1378 aa16.74■□□□□ 0.27
CKAP4-202ENST00000552828 SLC24A1O60721 1099 aa16.73■□□□□ 0.27
CKAP4-202ENST00000552828 LTN1O94822 1766 aa16.72■□□□□ 0.27
CKAP4-202ENST00000552828 PAPPAQ13219 1627 aa16.71■□□□□ 0.27
CKAP4-202ENST00000552828 SYT17Q9BSW7 474 aa16.71■□□□□ 0.27
CKAP4-202ENST00000552828 MYOM1P52179 1685 aa16.7■□□□□ 0.26
CKAP4-202ENST00000552828 ST20-MTHFSA0A0A6YYL1 179 aa16.7■□□□□ 0.26
CKAP4-202ENST00000552828 FHDC1Q9C0D6 1143 aaPredicted RBP16.7■□□□□ 0.26
CKAP4-202ENST00000552828 LRRC4BQ9NT99 713 aa16.7■□□□□ 0.26
CKAP4-202ENST00000552828 COG3Q96JB2 828 aa16.69■□□□□ 0.26
CKAP4-202ENST00000552828 MAP3K19Q56UN5 1328 aa16.69■□□□□ 0.26
CKAP4-202ENST00000552828 ZNF827Q17R98 1081 aa16.68■□□□□ 0.26
CKAP4-202ENST00000552828 SLC27A3Q5K4L6 730 aa16.68■□□□□ 0.26
CKAP4-202ENST00000552828 MAP3K5Q99683 1374 aa16.67■□□□□ 0.26
CKAP4-202ENST00000552828 HOXC9P31274 260 aa16.67■□□□□ 0.26
CKAP4-202ENST00000552828 DDX54Q8TDD1 881 aaKnown RBP16.67■□□□□ 0.26
CKAP4-202ENST00000552828 AKT1S1Q96B36 256 aa16.67■□□□□ 0.26
CKAP4-202ENST00000552828 BTAF1O14981 1849 aa16.66■□□□□ 0.26
CKAP4-202ENST00000552828 LTV1Q96GA3 475 aaPredicted RBP16.66■□□□□ 0.26
CKAP4-202ENST00000552828 ARXQ96QS3 562 aa16.66■□□□□ 0.26
CKAP4-202ENST00000552828 ANKRD36BQ8N2N9 1353 aa16.65■□□□□ 0.26
CKAP4-202ENST00000552828 SLC16A10Q8TF71 515 aa16.65■□□□□ 0.26
CKAP4-202ENST00000552828 FAM208AQ9UK61 1670 aaKnown RBP16.65■□□□□ 0.26
CKAP4-202ENST00000552828 FBLN1P23142 703 aa16.64■□□□□ 0.25
CKAP4-202ENST00000552828 AMPHP49418 695 aa16.64■□□□□ 0.25
CKAP4-202ENST00000552828 RTL1A6NKG5 1358 aa16.64■□□□□ 0.25
CKAP4-202ENST00000552828 PRIM1P49642 420 aaKnown RBP16.63■□□□□ 0.25
CKAP4-202ENST00000552828 ZCRB1Q8TBF4 217 aaKnown RBP16.63■□□□□ 0.25
CKAP4-202ENST00000552828 NSD2O96028 1365 aa16.63■□□□□ 0.25
CKAP4-202ENST00000552828 FYB1O15117 783 aa16.62■□□□□ 0.25
CKAP4-202ENST00000552828 ZNF784Q8NCA9 323 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms