RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 RNF135Q8IUD6 432 aa10.5□□□□□ -0.73
LIMA1-210ENST00000552045 LZTS3O60299 673 aaPredicted RBP10.49□□□□□ -0.73
LIMA1-210ENST00000552045 PRDM9Q9NQV7 894 aa10.49□□□□□ -0.73
LIMA1-210ENST00000552045 ATP5J2-PTCD1G3V325 749 aa10.48□□□□□ -0.73
LIMA1-210ENST00000552045 PTK7Q13308 1070 aa10.48□□□□□ -0.73
LIMA1-210ENST00000552045 LARP1Q6PKG0 1096 aaKnown RBP10.48□□□□□ -0.73
LIMA1-210ENST00000552045 PLPP7Q8NBV4 271 aa10.48□□□□□ -0.73
LIMA1-210ENST00000552045 CHIC2Q9UKJ5 165 aa10.48□□□□□ -0.73
LIMA1-210ENST00000552045 RASA1P20936 1047 aa10.47□□□□□ -0.73
LIMA1-210ENST00000552045 PTPN5P54829 565 aa10.47□□□□□ -0.73
LIMA1-210ENST00000552045 COPS2P61201 443 aa10.47□□□□□ -0.73
LIMA1-210ENST00000552045 PHLDB3Q6NSJ2 640 aa10.47□□□□□ -0.73
LIMA1-210ENST00000552045 ADAM32Q8TC27 787 aa10.47□□□□□ -0.73
LIMA1-210ENST00000552045 ARHGAP9Q9BRR9 750 aa10.47□□□□□ -0.73
LIMA1-210ENST00000552045 RBM25P49756 843 aaKnown RBP10.46□□□□□ -0.73
LIMA1-210ENST00000552045 MAP7D1Q3KQU3 841 aa10.46□□□□□ -0.73
LIMA1-210ENST00000552045 TXNDC2Q86VQ3 553 aa10.46□□□□□ -0.73
LIMA1-210ENST00000552045 CCER1Q8TC90 406 aaPredicted RBP10.46□□□□□ -0.73
LIMA1-210ENST00000552045 FAM200AQ8TCP9 573 aa10.46□□□□□ -0.73
LIMA1-210ENST00000552045 ZNF428Q96B54 188 aa10.46□□□□□ -0.73
LIMA1-210ENST00000552045 CDCA7Q9BWT1 371 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-210ENST00000552045 SSFA2P28290 1259 aa10.44□□□□□ -0.74
LIMA1-210ENST00000552045 FAM69CQ0P6D2 419 aa10.44□□□□□ -0.74
LIMA1-210ENST00000552045 MMRN1Q13201 1228 aa10.44□□□□□ -0.74
LIMA1-210ENST00000552045 EML3Q32P44 896 aa10.44□□□□□ -0.74
LIMA1-210ENST00000552045 TRAF7Q6Q0C0 670 aa10.44□□□□□ -0.74
LIMA1-210ENST00000552045 SH3BP5LQ7L8J4 393 aa10.44□□□□□ -0.74
LIMA1-210ENST00000552045 ZBTB33Q86T24 672 aa10.44□□□□□ -0.74
LIMA1-210ENST00000552045 UNC93B1Q9H1C4 597 aa10.44□□□□□ -0.74
LIMA1-210ENST00000552045 HCSTQ9UBK5 93 aa10.44□□□□□ -0.74
LIMA1-210ENST00000552045 ANKMY2Q8IV38 441 aa10.43□□□□□ -0.74
LIMA1-210ENST00000552045 CLP1Q92989 425 aaKnown RBP10.43□□□□□ -0.74
LIMA1-210ENST00000552045 SLAIN2Q9P270 581 aa10.43□□□□□ -0.74
LIMA1-210ENST00000552045 ADH1BP00325 375 aa10.42□□□□□ -0.74
LIMA1-210ENST00000552045 PTCRAQ6ISU1 281 aaPredicted RBP10.42□□□□□ -0.74
LIMA1-210ENST00000552045 OGFOD1Q8N543 542 aa10.42□□□□□ -0.74
LIMA1-210ENST00000552045 AMOTL2Q9Y2J4 779 aa10.42□□□□□ -0.74
LIMA1-210ENST00000552045 TLL1O43897 1013 aa10.41□□□□□ -0.74
LIMA1-210ENST00000552045 ZPR1O75312 459 aa10.41□□□□□ -0.74
LIMA1-210ENST00000552045 ARID4AP29374 1257 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-210ENST00000552045 TSGA10IPQ3SY00 556 aa10.41□□□□□ -0.74
LIMA1-210ENST00000552045 DZIP3Q86Y13 1208 aaKnown RBP10.41□□□□□ -0.74
LIMA1-210ENST00000552045 CCDC24Q8N4L8 307 aa10.41□□□□□ -0.74
LIMA1-210ENST00000552045 DPYDQ12882 1025 aa10.4□□□□□ -0.74
LIMA1-210ENST00000552045 TRIM50Q86XT4 487 aa10.4□□□□□ -0.74
LIMA1-210ENST00000552045 ATP1A2P50993 1020 aa10.39□□□□□ -0.75
LIMA1-210ENST00000552045 CLDN10P78369 228 aa10.39□□□□□ -0.75
LIMA1-210ENST00000552045 SH3RF1Q7Z6J0 888 aa10.39□□□□□ -0.75
LIMA1-210ENST00000552045 NOD1Q9Y239 953 aa10.39□□□□□ -0.75
LIMA1-210ENST00000552045 SWI5Q1ZZU3 235 aa10.38□□□□□ -0.75
LIMA1-210ENST00000552045 ZNF594Q96JF6 807 aaPredicted RBP10.38□□□□□ -0.75
LIMA1-210ENST00000552045 CCDC85AQ96PX6 553 aaPredicted RBP10.38□□□□□ -0.75
LIMA1-210ENST00000552045 DNAAF2Q9NVR5 837 aaKnown RBP10.38□□□□□ -0.75
LIMA1-210ENST00000552045 ATP2B4P23634 1241 aa10.37□□□□□ -0.75
LIMA1-210ENST00000552045 LARGE2Q8N3Y3 721 aa10.37□□□□□ -0.75
LIMA1-210ENST00000552045 CARD14Q9BXL6 1004 aa10.37□□□□□ -0.75
LIMA1-210ENST00000552045 DOLKQ9UPQ8 538 aa10.37□□□□□ -0.75
LIMA1-210ENST00000552045 MAGEB6P1A0A0J9YX57 407 aa10.36□□□□□ -0.75
LIMA1-210ENST00000552045 MTRQ99707 1265 aa10.36□□□□□ -0.75
LIMA1-210ENST00000552045 SLC6A16Q9GZN6 736 aa10.36□□□□□ -0.75
LIMA1-210ENST00000552045 E9PSI1 815 aa10.35□□□□□ -0.75
LIMA1-210ENST00000552045 ZBTB7BO15156 539 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-210ENST00000552045 GIGYF1O75420 1035 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-210ENST00000552045 SIX5Q8N196 739 aa10.35□□□□□ -0.75
LIMA1-210ENST00000552045 DKK1O94907 266 aa10.34□□□□□ -0.75
LIMA1-210ENST00000552045 ERFEQ4G0M1 354 aa10.34□□□□□ -0.75
LIMA1-210ENST00000552045 OXLD1Q5BKU9 147 aa10.34□□□□□ -0.75
LIMA1-210ENST00000552045 TJAP1Q5JTD0 557 aa10.34□□□□□ -0.75
LIMA1-210ENST00000552045 BPHLQ86WA6 291 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-210ENST00000552045 BAP1Q92560 729 aa10.34□□□□□ -0.75
LIMA1-210ENST00000552045 GTF2IP78347 998 aa10.33□□□□□ -0.76
LIMA1-210ENST00000552045 RNF20Q5VTR2 975 aa10.33□□□□□ -0.76
LIMA1-210ENST00000552045 IL21Q9HBE4 155 aa10.33□□□□□ -0.76
LIMA1-210ENST00000552045 KIAA1024Q9UPX6 916 aa10.33□□□□□ -0.76
LIMA1-210ENST00000552045 SOWAHDA6NJG2 315 aa10.32□□□□□ -0.76
LIMA1-210ENST00000552045 AGERQ15109 404 aa10.32□□□□□ -0.76
LIMA1-210ENST00000552045 C1orf216Q8TAB5 229 aa10.32□□□□□ -0.76
LIMA1-210ENST00000552045 FOXJ1Q92949 421 aa10.32□□□□□ -0.76
LIMA1-210ENST00000552045 SERPINB4P48594 390 aa10.31□□□□□ -0.76
LIMA1-210ENST00000552045 SEC13P55735 322 aa10.31□□□□□ -0.76
LIMA1-210ENST00000552045 LINC01559Q495D7 138 aa10.31□□□□□ -0.76
LIMA1-210ENST00000552045 C4orf48Q5BLP8 95 aa10.31□□□□□ -0.76
LIMA1-210ENST00000552045 ZNF511Q8NB15 262 aa10.31□□□□□ -0.76
LIMA1-210ENST00000552045 ZNF516Q92618 1163 aa10.31□□□□□ -0.76
LIMA1-210ENST00000552045 ITGBL1O95965 494 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-210ENST00000552045 CCDC102BQ68D86 513 aa10.3□□□□□ -0.76
LIMA1-210ENST00000552045 SLC10A4Q96EP9 437 aa10.3□□□□□ -0.76
LIMA1-210ENST00000552045 SCNN1AP37088 669 aa10.29□□□□□ -0.76
LIMA1-210ENST00000552045 RBM19Q9Y4C8 960 aaKnown RBP10.29□□□□□ -0.76
LIMA1-210ENST00000552045 PCDHGA11Q9Y5H2 935 aa10.29□□□□□ -0.76
LIMA1-210ENST00000552045 ESPNB1AK53 854 aa10.28□□□□□ -0.76
LIMA1-210ENST00000552045 PRMT3O60678 531 aa10.28□□□□□ -0.76
LIMA1-210ENST00000552045 NBPF20Q3BBV1 942 aa10.28□□□□□ -0.76
LIMA1-210ENST00000552045 DNAJC14Q6Y2X3 702 aaPredicted RBP10.28□□□□□ -0.76
LIMA1-210ENST00000552045 SIRT1Q96EB6 747 aa10.28□□□□□ -0.76
LIMA1-210ENST00000552045 C1QTNF2Q9BXJ5 285 aa10.28□□□□□ -0.76
LIMA1-210ENST00000552045 ERCC3P19447 782 aa10.27□□□□□ -0.77
LIMA1-210ENST00000552045 USP4Q13107 963 aa10.27□□□□□ -0.77
LIMA1-210ENST00000552045 OCLNQ16625 522 aa10.27□□□□□ -0.77
LIMA1-210ENST00000552045 TPCN2Q8NHX9 752 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms