RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 SPDYE5A6NIY4 337 aa5.39□□□□□ -1.55
LIMA1-209ENST00000552008 CBLBQ13191 982 aa5.39□□□□□ -1.55
LIMA1-209ENST00000552008 MTMR2Q13614 643 aa5.39□□□□□ -1.55
LIMA1-209ENST00000552008 LYPD8Q6UX82 237 aa5.39□□□□□ -1.55
LIMA1-209ENST00000552008 VASH1Q7L8A9 365 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-209ENST00000552008 MAP10Q9P2G4 905 aa5.39□□□□□ -1.55
LIMA1-209ENST00000552008 MAP4K5Q9Y4K4 846 aa5.39□□□□□ -1.55
LIMA1-209ENST00000552008 SENP3-EIF4A1A0A087X0R7 540 aa5.38□□□□□ -1.55
LIMA1-209ENST00000552008 KRBA1A5PL33 1030 aa5.38□□□□□ -1.55
LIMA1-209ENST00000552008 IRF6O14896 467 aa5.38□□□□□ -1.55
LIMA1-209ENST00000552008 BCRP11274 1271 aa5.38□□□□□ -1.55
LIMA1-209ENST00000552008 NDUFV2P19404 249 aa5.38□□□□□ -1.55
LIMA1-209ENST00000552008 CLCN1P35523 988 aa5.38□□□□□ -1.55
LIMA1-209ENST00000552008 CTSOP43234 321 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-209ENST00000552008 Q6ZVU0 165 aa5.38□□□□□ -1.55
LIMA1-209ENST00000552008 C1QTNF2Q9BXJ5 285 aa5.38□□□□□ -1.55
LIMA1-209ENST00000552008 BTBD11A6QL63 1104 aa5.37□□□□□ -1.55
LIMA1-209ENST00000552008 F12P00748 615 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-209ENST00000552008 MBIPQ9NS73 344 aa5.37□□□□□ -1.55
LIMA1-209ENST00000552008 PGPEP1Q9NXJ5 209 aa5.37□□□□□ -1.55
LIMA1-209ENST00000552008 MOXD2PA6NHM9 499 aa5.36□□□□□ -1.55
LIMA1-209ENST00000552008 PPP1R26Q5T8A7 1209 aaPredicted RBP5.36□□□□□ -1.55
LIMA1-209ENST00000552008 SPIRE2Q8WWL2 714 aa5.36□□□□□ -1.55
LIMA1-209ENST00000552008 KRTAP9-9Q9BYP9 154 aa5.36□□□□□ -1.55
LIMA1-209ENST00000552008 KRTAP9-4Q9BYQ2 154 aa5.36□□□□□ -1.55
LIMA1-209ENST00000552008 IGF1RP08069 1367 aa5.36□□□□□ -1.55
LIMA1-209ENST00000552008 TRMT44Q8IYL2 757 aaKnown RBP5.35□□□□□ -1.55
LIMA1-209ENST00000552008 RNF217Q8TC41 542 aa5.35□□□□□ -1.55
LIMA1-209ENST00000552008 INSM2Q96T92 566 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-209ENST00000552008 POLMQ9NP87 494 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-209ENST00000552008 CUEDC1Q9NWM3 386 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-209ENST00000552008 RELBQ01201 579 aa5.34□□□□□ -1.55
LIMA1-209ENST00000552008 ACDQ96AP0 544 aa5.34□□□□□ -1.55
LIMA1-209ENST00000552008 AGBL1Q96MI9 1066 aa5.34□□□□□ -1.55
LIMA1-209ENST00000552008 MINK1Q8N4C8 1332 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-209ENST00000552008 HAP1P54257 671 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-209ENST00000552008 PLCB2Q00722 1185 aa5.33□□□□□ -1.56
LIMA1-209ENST00000552008 ALYREFQ86V81 257 aaKnown RBP5.33□□□□□ -1.56
LIMA1-209ENST00000552008 KRI1Q8N9T8 703 aaKnown RBP5.33□□□□□ -1.56
LIMA1-209ENST00000552008 KRTAP4-8A0A0G2JLE6 195 aa5.32□□□□□ -1.56
LIMA1-209ENST00000552008 MAGEB6P1A0A0J9YX57 407 aa5.32□□□□□ -1.56
LIMA1-209ENST00000552008 CFAP99D6REC4 459 aa5.32□□□□□ -1.56
LIMA1-209ENST00000552008 GPR25O00155 361 aa5.32□□□□□ -1.56
LIMA1-209ENST00000552008 CCDC102AQ96A19 550 aa5.32□□□□□ -1.56
LIMA1-209ENST00000552008 ZNF837Q96EG3 531 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-209ENST00000552008 LRRC4BQ9NT99 713 aa5.32□□□□□ -1.56
LIMA1-209ENST00000552008 SNRPNP63162 240 aaKnown RBP5.31□□□□□ -1.56
LIMA1-209ENST00000552008 ZMYM1Q5SVZ6 1142 aa5.31□□□□□ -1.56
LIMA1-209ENST00000552008 FOXR1Q6PIV2 292 aa5.31□□□□□ -1.56
LIMA1-209ENST00000552008 ARMC2Q8NEN0 867 aa5.31□□□□□ -1.56
LIMA1-209ENST00000552008 ITGB7P26010 798 aa5.3□□□□□ -1.56
LIMA1-209ENST00000552008 COL8A1P27658 744 aa5.3□□□□□ -1.56
LIMA1-209ENST00000552008 NBPF14Q5TI25 921 aa5.3□□□□□ -1.56
LIMA1-209ENST00000552008 SH3BP5LQ7L8J4 393 aa5.3□□□□□ -1.56
LIMA1-209ENST00000552008 ZNF395Q9H8N7 513 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-209ENST00000552008 MKL2Q9ULH7 1088 aa5.3□□□□□ -1.56
LIMA1-209ENST00000552008 OIP5O43482 229 aa5.29□□□□□ -1.56
LIMA1-209ENST00000552008 SSTR3P32745 418 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-209ENST00000552008 FOXD4L5Q5VV16 416 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-209ENST00000552008 TRIM22Q8IYM9 498 aa5.29□□□□□ -1.56
LIMA1-209ENST00000552008 GMCL1Q96IK5 515 aa5.29□□□□□ -1.56
LIMA1-209ENST00000552008 CARD14Q9BXL6 1004 aa5.29□□□□□ -1.56
LIMA1-209ENST00000552008 PER1O15534 1290 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-209ENST00000552008 DHX9Q08211 1270 aaKnown RBP5.28□□□□□ -1.56
LIMA1-209ENST00000552008 ERFEQ4G0M1 354 aa5.28□□□□□ -1.56
LIMA1-209ENST00000552008 PRPF38BQ5VTL8 546 aaKnown RBP5.28□□□□□ -1.56
LIMA1-209ENST00000552008 LYSMD3Q7Z3D4 306 aa5.28□□□□□ -1.56
LIMA1-209ENST00000552008 SEMA6BQ9H3T3 888 aa5.28□□□□□ -1.56
LIMA1-209ENST00000552008 C1QTNF9BB2RNN3 333 aa5.27□□□□□ -1.57
LIMA1-209ENST00000552008 GJA5P36382 358 aa5.27□□□□□ -1.57
LIMA1-209ENST00000552008 GRIN2CQ14957 1233 aa5.27□□□□□ -1.57
LIMA1-209ENST00000552008 TRERF1Q96PN7 1200 aa5.27□□□□□ -1.57
LIMA1-209ENST00000552008 NSFL1CQ9UNZ2 370 aaKnown RBP5.27□□□□□ -1.57
LIMA1-209ENST00000552008 SCO2A0A1W2PP80 73 aa5.26□□□□□ -1.57
LIMA1-209ENST00000552008 MX2P20592 715 aa5.26□□□□□ -1.57
LIMA1-209ENST00000552008 DBN1Q16643 649 aa5.26□□□□□ -1.57
LIMA1-209ENST00000552008 RSBN1LQ6PCB5 846 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-209ENST00000552008 RIPOR1Q6ZS17 1223 aa5.26□□□□□ -1.57
LIMA1-209ENST00000552008 GTPBP3Q969Y2 492 aaKnown RBP5.26□□□□□ -1.57
LIMA1-209ENST00000552008 KCTD15Q96SI1 283 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-209ENST00000552008 ZBTB3Q9H5J0 574 aa5.26□□□□□ -1.57
LIMA1-209ENST00000552008 RRAGCQ9HB90 399 aa5.26□□□□□ -1.57
LIMA1-209ENST00000552008 PCDHB15Q9Y5E8 787 aa5.26□□□□□ -1.57
LIMA1-209ENST00000552008 RHOQP17081 205 aa5.25□□□□□ -1.57
LIMA1-209ENST00000552008 HRCP23327 699 aa5.25□□□□□ -1.57
LIMA1-209ENST00000552008 KRTAP19-1Q8IUB9 90 aa5.25□□□□□ -1.57
LIMA1-209ENST00000552008 OXCT2Q9BYC2 517 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-209ENST00000552008 SHISA8B8ZZ34 492 aa5.24□□□□□ -1.57
LIMA1-209ENST00000552008 PRICKLE2Q7Z3G6 844 aa5.24□□□□□ -1.57
LIMA1-209ENST00000552008 CD163Q86VB7 1156 aa5.24□□□□□ -1.57
LIMA1-209ENST00000552008 SLC10A4Q96EP9 437 aa5.24□□□□□ -1.57
LIMA1-209ENST00000552008 CDV3Q9UKY7 258 aaKnown RBP5.24□□□□□ -1.57
LIMA1-209ENST00000552008 H7C1W4 665 aa5.23□□□□□ -1.57
LIMA1-209ENST00000552008 ADH1AP07327 375 aa5.23□□□□□ -1.57
LIMA1-209ENST00000552008 DOC2BQ14184 412 aa5.23□□□□□ -1.57
LIMA1-209ENST00000552008 INTS6LQ5JSJ4 861 aaKnown RBP5.23□□□□□ -1.57
LIMA1-209ENST00000552008 TSC1Q92574 1164 aa5.23□□□□□ -1.57
LIMA1-209ENST00000552008 GPKOWQ92917 476 aaPredicted RBP eCLIP5.23□□□□□ -1.57
LIMA1-209ENST00000552008 SUV39H2Q9H5I1 410 aa5.23□□□□□ -1.57
LIMA1-209ENST00000552008 PTGIRP43119 386 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms