RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 MRPL14Q6P1L8 145 aaKnown RBP6.69□□□□□ -1.34
LIMA1-208ENST00000551691 ZBTB3Q9H5J0 574 aa6.69□□□□□ -1.34
LIMA1-208ENST00000551691 STK17AQ9UEE5 414 aa6.69□□□□□ -1.34
LIMA1-208ENST00000551691 ERBB4Q15303 1308 aa6.69□□□□□ -1.34
LIMA1-208ENST00000551691 WIZO95785 1651 aa6.68□□□□□ -1.34
LIMA1-208ENST00000551691 CLASP1Q7Z460 1538 aa6.68□□□□□ -1.34
LIMA1-208ENST00000551691 PLEKHG3A1L390 1219 aa6.68□□□□□ -1.34
LIMA1-208ENST00000551691 NUTM2BA6NNL0 878 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-208ENST00000551691 NUTM2EB1AL46 878 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-208ENST00000551691 F12P00748 615 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-208ENST00000551691 C6orf118Q5T5N4 469 aa6.68□□□□□ -1.34
LIMA1-208ENST00000551691 NUTM2DQ5VT03 806 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-208ENST00000551691 NUTM2AQ8IVF1 878 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-208ENST00000551691 FAM174AQ8TBP5 190 aa6.68□□□□□ -1.34
LIMA1-208ENST00000551691 SLC16A10Q8TF71 515 aa6.68□□□□□ -1.34
LIMA1-208ENST00000551691 HECW2Q9P2P5 1572 aa6.68□□□□□ -1.34
LIMA1-208ENST00000551691 TOPBP1Q92547 1522 aa6.67□□□□□ -1.34
LIMA1-208ENST00000551691 ERCC6L2Q5T890 1561 aa6.67□□□□□ -1.34
LIMA1-208ENST00000551691 ADH1CP00326 375 aa6.67□□□□□ -1.34
LIMA1-208ENST00000551691 NR3C2P08235 984 aa6.67□□□□□ -1.34
LIMA1-208ENST00000551691 PDE4DQ08499 809 aa6.67□□□□□ -1.34
LIMA1-208ENST00000551691 MYSM1Q5VVJ2 828 aa6.67□□□□□ -1.34
LIMA1-208ENST00000551691 ITPKCQ96DU7 683 aa6.67□□□□□ -1.34
LIMA1-208ENST00000551691 ZIC2O95409 532 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-208ENST00000551691 DIXDC1Q155Q3 683 aa6.66□□□□□ -1.34
LIMA1-208ENST00000551691 IL27Q8NEV9 243 aa6.66□□□□□ -1.34
LIMA1-208ENST00000551691 KIF13AQ9H1H9 1805 aa6.66□□□□□ -1.34
LIMA1-208ENST00000551691 DISP3Q9P2K9 1392 aa6.66□□□□□ -1.34
LIMA1-208ENST00000551691 SYNJ2O15056 1496 aa6.66□□□□□ -1.34
LIMA1-208ENST00000551691 GJA5P36382 358 aa6.65□□□□□ -1.34
LIMA1-208ENST00000551691 RTL5Q5HYW3 569 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-208ENST00000551691 KLF16Q9BXK1 252 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-208ENST00000551691 RAD54L2Q9Y4B4 1467 aa6.65□□□□□ -1.35
LIMA1-208ENST00000551691 MAGEB6P1A0A0J9YX57 407 aa6.64□□□□□ -1.35
LIMA1-208ENST00000551691 H3BM21 787 aa6.64□□□□□ -1.35
LIMA1-208ENST00000551691 SCARF1Q14162 830 aa6.64□□□□□ -1.35
LIMA1-208ENST00000551691 IRF7Q92985 503 aa6.64□□□□□ -1.35
LIMA1-208ENST00000551691 GPBP1L1Q9HC44 474 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-208ENST00000551691 POLR3EQ9NVU0 708 aa6.64□□□□□ -1.35
LIMA1-208ENST00000551691 SNAPC4Q5SXM2 1469 aa6.64□□□□□ -1.35
LIMA1-208ENST00000551691 FSHRP23945 695 aa6.63□□□□□ -1.35
LIMA1-208ENST00000551691 GRM5P41594 1212 aa6.63□□□□□ -1.35
LIMA1-208ENST00000551691 TARBP1Q13395 1621 aaKnown RBP6.63□□□□□ -1.35
LIMA1-208ENST00000551691 PRPF38BQ5VTL8 546 aaKnown RBP6.63□□□□□ -1.35
LIMA1-208ENST00000551691 CARD14Q9BXL6 1004 aa6.63□□□□□ -1.35
LIMA1-208ENST00000551691 ADGRL1O94910 1474 aa6.62□□□□□ -1.35
LIMA1-208ENST00000551691 LILRB3O75022 631 aa6.62□□□□□ -1.35
LIMA1-208ENST00000551691 LORP23490 312 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-208ENST00000551691 BPHLQ86WA6 291 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-208ENST00000551691 MPNDQ8N594 471 aa6.62□□□□□ -1.35
LIMA1-208ENST00000551691 CDK15Q96Q40 435 aa6.62□□□□□ -1.35
LIMA1-208ENST00000551691 KDM4CQ9H3R0 1056 aa6.62□□□□□ -1.35
LIMA1-208ENST00000551691 MAN1A2O60476 641 aa6.61□□□□□ -1.35
LIMA1-208ENST00000551691 BMP2P12643 396 aa6.61□□□□□ -1.35
LIMA1-208ENST00000551691 RANGAP1P46060 587 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-208ENST00000551691 ZSCAN1Q8NBB4 408 aa6.61□□□□□ -1.35
LIMA1-208ENST00000551691 RSPH6AQ9H0K4 717 aa6.61□□□□□ -1.35
LIMA1-208ENST00000551691 SYNJ1O43426 1573 aa6.61□□□□□ -1.35
LIMA1-208ENST00000551691 CLK2P49760 499 aaKnown RBP6.6□□□□□ -1.35
LIMA1-208ENST00000551691 NR5A1Q13285 461 aa6.59□□□□□ -1.35
LIMA1-208ENST00000551691 FBXO31Q5XUX0 539 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-208ENST00000551691 VASH1Q7L8A9 365 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-208ENST00000551691 LINC00528Q8N1L1 170 aa6.59□□□□□ -1.35
LIMA1-208ENST00000551691 HELBQ8NG08 1087 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-208ENST00000551691 ZMYND15Q9H091 742 aa6.59□□□□□ -1.35
LIMA1-208ENST00000551691 SOGA1O94964 1423 aa6.59□□□□□ -1.36
LIMA1-208ENST00000551691 KDM6BO15054 1643 aa6.58□□□□□ -1.36
LIMA1-208ENST00000551691 CTDSPL2Q05D32 466 aa6.58□□□□□ -1.36
LIMA1-208ENST00000551691 SH3RF1Q7Z6J0 888 aa6.58□□□□□ -1.36
LIMA1-208ENST00000551691 LRRN4Q8WUT4 740 aa6.58□□□□□ -1.36
LIMA1-208ENST00000551691 PODXL2Q9NZ53 605 aa6.58□□□□□ -1.36
LIMA1-208ENST00000551691 TSPOAP1O95153 1857 aa6.58□□□□□ -1.36
LIMA1-208ENST00000551691 CBLBQ13191 982 aa6.57□□□□□ -1.36
LIMA1-208ENST00000551691 SH3BP5LQ7L8J4 393 aa6.57□□□□□ -1.36
LIMA1-208ENST00000551691 NPAS3Q8IXF0 933 aa6.57□□□□□ -1.36
LIMA1-208ENST00000551691 MEIOBQ8N635 442 aa6.57□□□□□ -1.36
LIMA1-208ENST00000551691 ARID3AQ99856 593 aa6.57□□□□□ -1.36
LIMA1-208ENST00000551691 C1QTNF2Q9BXJ5 285 aa6.57□□□□□ -1.36
LIMA1-208ENST00000551691 DNMT3LQ9UJW3 386 aa6.57□□□□□ -1.36
LIMA1-208ENST00000551691 ATP1B4Q9UN42 357 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-208ENST00000551691 POLA1P09884 1462 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-208ENST00000551691 ABCC10Q5T3U5 1492 aa6.57□□□□□ -1.36
LIMA1-208ENST00000551691 FIGNL2A6NMB9 653 aa6.56□□□□□ -1.36
LIMA1-208ENST00000551691 UPP2O95045 317 aa6.56□□□□□ -1.36
LIMA1-208ENST00000551691 NBPF14Q5TI25 921 aa6.56□□□□□ -1.36
LIMA1-208ENST00000551691 PPFIA3O75145 1194 aa6.55□□□□□ -1.36
LIMA1-208ENST00000551691 ERFEQ4G0M1 354 aa6.55□□□□□ -1.36
LIMA1-208ENST00000551691 CCDC116Q8IYX3 515 aa6.55□□□□□ -1.36
LIMA1-208ENST00000551691 PROCA1Q8NCQ7 364 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-208ENST00000551691 ARMC2Q8NEN0 867 aa6.55□□□□□ -1.36
LIMA1-208ENST00000551691 DDRGK1Q96HY6 314 aa6.55□□□□□ -1.36
LIMA1-208ENST00000551691 DNMBPQ6XZF7 1577 aa6.54□□□□□ -1.36
LIMA1-208ENST00000551691 FAM181BA6NEQ2 426 aa6.54□□□□□ -1.36
LIMA1-208ENST00000551691 NR6A1Q15406 480 aa6.54□□□□□ -1.36
LIMA1-208ENST00000551691 TUSC1Q2TAM9 212 aa6.54□□□□□ -1.36
LIMA1-208ENST00000551691 SOS2Q07890 1332 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-208ENST00000551691 ABCC8Q09428 1581 aa6.53□□□□□ -1.36
LIMA1-208ENST00000551691 RAB15P59190 212 aa6.53□□□□□ -1.36
LIMA1-208ENST00000551691 PPP1R26Q5T8A7 1209 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-208ENST00000551691 AGBL1Q96MI9 1066 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms