RNA–Protein interactions for RNA: ENST00000551642.1

DEPDC4-210, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-210ENST00000551642 SPTLC1O15269 473 aa11.32□□□□□ -0.6
DEPDC4-210ENST00000551642 RSBN1LQ6PCB5 846 aaPredicted RBP11.32□□□□□ -0.6
DEPDC4-210ENST00000551642 MTMR2Q13614 643 aa11.31□□□□□ -0.6
DEPDC4-210ENST00000551642 MLECQ14165 292 aa11.31□□□□□ -0.6
DEPDC4-210ENST00000551642 RGS17Q9UGC6 210 aaPredicted RBP11.31□□□□□ -0.6
DEPDC4-210ENST00000551642 POGZQ7Z3K3 1410 aa11.31□□□□□ -0.6
DEPDC4-210ENST00000551642 UHRF1BP1Q6BDS2 1440 aa11.3□□□□□ -0.6
DEPDC4-210ENST00000551642 DESI1Q6ICB0 168 aa11.3□□□□□ -0.6
DEPDC4-210ENST00000551642 PKD2L1Q9P0L9 805 aa11.3□□□□□ -0.6
DEPDC4-210ENST00000551642 TUSC1Q2TAM9 212 aa11.29□□□□□ -0.6
DEPDC4-210ENST00000551642 TRAF7Q6Q0C0 670 aa11.29□□□□□ -0.6
DEPDC4-210ENST00000551642 ZNF335Q9H4Z2 1342 aaPredicted RBP11.29□□□□□ -0.6
DEPDC4-210ENST00000551642 SETD1AO15047 1707 aaKnown RBP11.29□□□□□ -0.6
DEPDC4-210ENST00000551642 PRPF38BQ5VTL8 546 aaKnown RBP11.28□□□□□ -0.6
DEPDC4-210ENST00000551642 ZMYM4Q5VZL5 1548 aa11.28□□□□□ -0.6
DEPDC4-210ENST00000551642 NCOA1Q15788 1441 aa11.27□□□□□ -0.6
DEPDC4-210ENST00000551642 C3P01024 1663 aa11.27□□□□□ -0.6
DEPDC4-210ENST00000551642 LCE2BO14633 110 aa11.27□□□□□ -0.61
DEPDC4-210ENST00000551642 TRIM32Q13049 653 aa11.27□□□□□ -0.61
DEPDC4-210ENST00000551642 RIC3Q7Z5B4 369 aa11.27□□□□□ -0.61
DEPDC4-210ENST00000551642 AKNAQ7Z591 1439 aa11.26□□□□□ -0.61
DEPDC4-210ENST00000551642 ZFYVE16Q7Z3T8 1539 aa11.26□□□□□ -0.61
DEPDC4-210ENST00000551642 DGAT1O75907 488 aa11.26□□□□□ -0.61
DEPDC4-210ENST00000551642 MYSM1Q5VVJ2 828 aa11.26□□□□□ -0.61
DEPDC4-210ENST00000551642 NUDT12Q9BQG2 462 aa11.26□□□□□ -0.61
DEPDC4-210ENST00000551642 PTPRNQ16849 979 aa11.25□□□□□ -0.61
DEPDC4-210ENST00000551642 CCDC24Q8N4L8 307 aa11.25□□□□□ -0.61
DEPDC4-210ENST00000551642 PRR7Q8TB68 274 aa11.25□□□□□ -0.61
DEPDC4-210ENST00000551642 ZBTB3Q9H5J0 574 aa11.25□□□□□ -0.61
DEPDC4-210ENST00000551642 PCDHB15Q9Y5E8 787 aa11.25□□□□□ -0.61
DEPDC4-210ENST00000551642 CARMIL1Q5VZK9 1371 aa11.25□□□□□ -0.61
DEPDC4-210ENST00000551642 FHOD3Q2V2M9 1422 aa11.25□□□□□ -0.61
DEPDC4-210ENST00000551642 ALKQ9UM73 1620 aa11.24□□□□□ -0.61
DEPDC4-210ENST00000551642 RSPH6AQ9H0K4 717 aa11.24□□□□□ -0.61
DEPDC4-210ENST00000551642 DENND4BO75064 1496 aaPredicted RBP11.24□□□□□ -0.61
DEPDC4-210ENST00000551642 TNFRSF10AO00220 468 aa11.23□□□□□ -0.61
DEPDC4-210ENST00000551642 SUPT5HO00267 1087 aaKnown RBP11.23□□□□□ -0.61
DEPDC4-210ENST00000551642 WNT7AO00755 349 aa11.23□□□□□ -0.61
DEPDC4-210ENST00000551642 HRCP23327 699 aa11.23□□□□□ -0.61
DEPDC4-210ENST00000551642 FOXC1Q12948 553 aa11.23□□□□□ -0.61
DEPDC4-210ENST00000551642 EFCAB5A4FU69 1503 aa11.23□□□□□ -0.61
DEPDC4-210ENST00000551642 CCNYL3P0C7X3 344 aa11.22□□□□□ -0.61
DEPDC4-210ENST00000551642 WNT7BP56706 349 aa11.22□□□□□ -0.61
DEPDC4-210ENST00000551642 PIP4K2BP78356 416 aa11.22□□□□□ -0.61
DEPDC4-210ENST00000551642 HECW1Q76N89 1606 aa11.22□□□□□ -0.61
DEPDC4-210ENST00000551642 EVA1BQ9NVM1 165 aa11.22□□□□□ -0.61
DEPDC4-210ENST00000551642 TOR4AQ9NXH8 423 aa11.22□□□□□ -0.61
DEPDC4-210ENST00000551642 CAMSAP1Q5T5Y3 1602 aa11.21□□□□□ -0.61
DEPDC4-210ENST00000551642 PKDCCQ504Y2 493 aa11.21□□□□□ -0.61
DEPDC4-210ENST00000551642 ATP10BO94823 1461 aa11.2□□□□□ -0.62
DEPDC4-210ENST00000551642 KIF27Q86VH2 1401 aa11.2□□□□□ -0.62
DEPDC4-210ENST00000551642 KDM4CQ9H3R0 1056 aa11.2□□□□□ -0.62
DEPDC4-210ENST00000551642 LIMD1Q9UGP4 676 aa11.2□□□□□ -0.62
DEPDC4-210ENST00000551642 ARID3CA6NKF2 412 aa11.18□□□□□ -0.62
DEPDC4-210ENST00000551642 LILRB3O75022 631 aa11.18□□□□□ -0.62
DEPDC4-210ENST00000551642 PTCRAQ6ISU1 281 aaPredicted RBP11.18□□□□□ -0.62
DEPDC4-210ENST00000551642 LYPD8Q6UX82 237 aa11.18□□□□□ -0.62
DEPDC4-210ENST00000551642 CYP4X1Q8N118 509 aa11.18□□□□□ -0.62
DEPDC4-210ENST00000551642 DDRGK1Q96HY6 314 aa11.18□□□□□ -0.62
DEPDC4-210ENST00000551642 FAM187AA6NFU0 413 aa11.17□□□□□ -0.62
DEPDC4-210ENST00000551642 CFAP99D6REC4 459 aa11.17□□□□□ -0.62
DEPDC4-210ENST00000551642 CLK2P49760 499 aaKnown RBP11.17□□□□□ -0.62
DEPDC4-210ENST00000551642 KCNH2Q12809 1159 aa11.17□□□□□ -0.62
DEPDC4-210ENST00000551642 GPBP1L1Q9HC44 474 aaPredicted RBP11.17□□□□□ -0.62
DEPDC4-210ENST00000551642 MAGI2Q86UL8 1455 aa11.17□□□□□ -0.62
DEPDC4-210ENST00000551642 SKOR1P84550 965 aa11.16□□□□□ -0.62
DEPDC4-210ENST00000551642 MYT1Q01538 1121 aa11.16□□□□□ -0.62
DEPDC4-210ENST00000551642 POTEAQ6S8J7 498 aa11.16□□□□□ -0.62
DEPDC4-210ENST00000551642 SNIP1Q8TAD8 396 aaKnown RBP11.15□□□□□ -0.62
DEPDC4-210ENST00000551642 CABLES1Q8TDN4 633 aa11.15□□□□□ -0.62
DEPDC4-210ENST00000551642 AVPP01185 164 aa11.14□□□□□ -0.63
DEPDC4-210ENST00000551642 QPCTQ16769 361 aa11.14□□□□□ -0.63
DEPDC4-210ENST00000551642 RC3H1Q5TC82 1133 aaKnown RBP11.14□□□□□ -0.63
DEPDC4-210ENST00000551642 MRGPRX2Q96LB1 330 aa11.14□□□□□ -0.63
DEPDC4-210ENST00000551642 UNC93B1Q9H1C4 597 aa11.14□□□□□ -0.63
DEPDC4-210ENST00000551642 SUPT6HQ7KZ85 1726 aaKnown RBP11.14□□□□□ -0.63
DEPDC4-210ENST00000551642 CTTNBP2Q8WZ74 1663 aa11.14□□□□□ -0.63
DEPDC4-210ENST00000551642 ATP10AO60312 1499 aa11.13□□□□□ -0.63
DEPDC4-210ENST00000551642 CFAP74Q9C0B2 1584 aa11.13□□□□□ -0.63
DEPDC4-210ENST00000551642 SKIV2LQ15477 1246 aaKnown RBP11.13□□□□□ -0.63
DEPDC4-210ENST00000551642 CSPP1Q1MSJ5 1256 aa11.13□□□□□ -0.63
DEPDC4-210ENST00000551642 SH3D19Q5HYK7 790 aa11.13□□□□□ -0.63
DEPDC4-210ENST00000551642 FAM117AQ9C073 453 aa11.13□□□□□ -0.63
DEPDC4-210ENST00000551642 C9orf84Q5VXU9 1444 aa11.12□□□□□ -0.63
DEPDC4-210ENST00000551642 NUTM2BA6NNL0 878 aaPredicted RBP11.12□□□□□ -0.63
DEPDC4-210ENST00000551642 NUTM2EB1AL46 878 aaPredicted RBP11.12□□□□□ -0.63
DEPDC4-210ENST00000551642 NUTM2DQ5VT03 806 aaPredicted RBP11.12□□□□□ -0.63
DEPDC4-210ENST00000551642 NUTM2AQ8IVF1 878 aaPredicted RBP11.12□□□□□ -0.63
DEPDC4-210ENST00000551642 CRIPAKQ8N1N5 446 aa11.12□□□□□ -0.63
DEPDC4-210ENST00000551642 TRAPPC8Q9Y2L5 1435 aa11.11□□□□□ -0.63
DEPDC4-210ENST00000551642 TTC24A2A3L6 582 aaPredicted RBP11.11□□□□□ -0.63
DEPDC4-210ENST00000551642 TOM1O60784 492 aa11.11□□□□□ -0.63
DEPDC4-210ENST00000551642 F12P00748 615 aaPredicted RBP11.11□□□□□ -0.63
DEPDC4-210ENST00000551642 POLR3EQ9NVU0 708 aa11.11□□□□□ -0.63
DEPDC4-210ENST00000551642 SH3BP2P78314 561 aa11.1□□□□□ -0.63
DEPDC4-210ENST00000551642 TCOF1Q13428 1488 aaKnown RBP11.09□□□□□ -0.63
DEPDC4-210ENST00000551642 PLEKHG3A1L390 1219 aa11.09□□□□□ -0.63
DEPDC4-210ENST00000551642 RTL5Q5HYW3 569 aaPredicted RBP11.09□□□□□ -0.63
DEPDC4-210ENST00000551642 ZNF142P52746 1687 aaPredicted RBP11.08□□□□□ -0.64
DEPDC4-210ENST00000551642 SIAH2O43255 324 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms