RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 TXNRD1Q16881 649 aa17.62■□□□□ 0.41
PTCH1-222ENST00000551425 MARCH10Q8NA82 808 aaPredicted RBP17.62■□□□□ 0.41
PTCH1-222ENST00000551425 STAC3Q96MF2 364 aa17.62■□□□□ 0.41
PTCH1-222ENST00000551425 CHD4Q14839 1912 aa17.62■□□□□ 0.41
PTCH1-222ENST00000551425 AATKQ6ZMQ8 1374 aa17.62■□□□□ 0.41
PTCH1-222ENST00000551425 MAP3K5Q99683 1374 aa17.62■□□□□ 0.41
PTCH1-222ENST00000551425 CDCA7Q9BWT1 371 aaPredicted RBP17.6■□□□□ 0.41
PTCH1-222ENST00000551425 ARHGEF28Q8N1W1 1705 aaKnown RBP17.6■□□□□ 0.41
PTCH1-222ENST00000551425 DCAF11Q8TEB1 546 aa17.59■□□□□ 0.41
PTCH1-222ENST00000551425 ARXQ96QS3 562 aa17.59■□□□□ 0.41
PTCH1-222ENST00000551425 KDM2AQ9Y2K7 1162 aa17.59■□□□□ 0.41
PTCH1-222ENST00000551425 BRD4O60885 1362 aaPredicted RBP17.58■□□□□ 0.4
PTCH1-222ENST00000551425 GIGYF1O75420 1035 aaPredicted RBP17.58■□□□□ 0.4
PTCH1-222ENST00000551425 TOM1L2Q6ZVM7 507 aa17.58■□□□□ 0.4
PTCH1-222ENST00000551425 WDR17Q8IZU2 1322 aa17.56■□□□□ 0.4
PTCH1-222ENST00000551425 CEP350Q5VT06 3117 aa17.56■□□□□ 0.4
PTCH1-222ENST00000551425 SLIT3O75094 1523 aa17.54■□□□□ 0.4
PTCH1-222ENST00000551425 ZBTB7CA1YPR0 619 aa17.54■□□□□ 0.4
PTCH1-222ENST00000551425 GPR162Q16538 588 aa17.53■□□□□ 0.4
PTCH1-222ENST00000551425 AXIN2Q9Y2T1 843 aa17.53■□□□□ 0.4
PTCH1-222ENST00000551425 WNK3Q9BYP7 1800 aa17.52■□□□□ 0.4
PTCH1-222ENST00000551425 NLRP6P59044 892 aa17.52■□□□□ 0.4
PTCH1-222ENST00000551425 PPIP5K1Q6PFW1 1433 aa17.52■□□□□ 0.4
PTCH1-222ENST00000551425 AKAP12Q02952 1782 aa17.51■□□□□ 0.39
PTCH1-222ENST00000551425 CARD10Q9BWT7 1032 aa17.51■□□□□ 0.39
PTCH1-222ENST00000551425 COL18A1P39060 1754 aa17.51■□□□□ 0.39
PTCH1-222ENST00000551425 EXOC5O00471 708 aa17.5■□□□□ 0.39
PTCH1-222ENST00000551425 USP6P35125 1406 aa17.49■□□□□ 0.39
PTCH1-222ENST00000551425 PAPPAQ13219 1627 aa17.49■□□□□ 0.39
PTCH1-222ENST00000551425 CPSF1Q10570 1443 aaKnown RBP17.48■□□□□ 0.39
PTCH1-222ENST00000551425 SRPK2P78362 688 aaKnown RBP17.47■□□□□ 0.39
PTCH1-222ENST00000551425 ARHGEF25Q86VW2 580 aa17.47■□□□□ 0.39
PTCH1-222ENST00000551425 TNS2Q63HR2 1409 aa17.47■□□□□ 0.39
PTCH1-222ENST00000551425 ZNF827Q17R98 1081 aa17.46■□□□□ 0.39
PTCH1-222ENST00000551425 SLC16A10Q8TF71 515 aa17.46■□□□□ 0.39
PTCH1-222ENST00000551425 SHANK3Q9BYB0 1731 aa17.46■□□□□ 0.39
PTCH1-222ENST00000551425 NHSQ6T4R5 1651 aa17.45■□□□□ 0.38
PTCH1-222ENST00000551425 CCDC7Q96M83 1385 aa17.45■□□□□ 0.38
PTCH1-222ENST00000551425 CSB-PGBD3P0DP91 1061 aa17.44■□□□□ 0.38
PTCH1-222ENST00000551425 CABP2Q9NPB3 220 aa17.44■□□□□ 0.38
PTCH1-222ENST00000551425 CABP1Q9NZU7 370 aa17.44■□□□□ 0.38
PTCH1-222ENST00000551425 KCNH5Q8NCM2 988 aa17.43■□□□□ 0.38
PTCH1-222ENST00000551425 TRPM1Q7Z4N2 1603 aa17.43■□□□□ 0.38
PTCH1-222ENST00000551425 POLD1P28340 1107 aa17.42■□□□□ 0.38
PTCH1-222ENST00000551425 PELP1Q8IZL8 1130 aaKnown RBP17.42■□□□□ 0.38
PTCH1-222ENST00000551425 ACSBG1Q96GR2 724 aa17.42■□□□□ 0.38
PTCH1-222ENST00000551425 LRRC4BQ9NT99 713 aa17.42■□□□□ 0.38
PTCH1-222ENST00000551425 PIK3C2AO00443 1686 aa17.42■□□□□ 0.38
PTCH1-222ENST00000551425 ABCC6O95255 1503 aa17.42■□□□□ 0.38
PTCH1-222ENST00000551425 KLHL34Q8N239 644 aa17.41■□□□□ 0.38
PTCH1-222ENST00000551425 AKT1S1Q96B36 256 aa17.41■□□□□ 0.38
PTCH1-222ENST00000551425 RAB3GAP2Q9H2M9 1393 aa17.4■□□□□ 0.38
PTCH1-222ENST00000551425 GRIN3BO60391 1043 aa17.4■□□□□ 0.38
PTCH1-222ENST00000551425 KIAA1210Q9ULL0 1709 aa17.4■□□□□ 0.38
PTCH1-222ENST00000551425 CENPJQ9HC77 1338 aaPredicted RBP17.4■□□□□ 0.38
PTCH1-222ENST00000551425 GOLGB1Q14789 3259 aaKnown RBP17.39■□□□□ 0.38
PTCH1-222ENST00000551425 COL24A1Q17RW2 1714 aa17.39■□□□□ 0.37
PTCH1-222ENST00000551425 NLGN2Q8NFZ4 835 aa17.39■□□□□ 0.37
PTCH1-222ENST00000551425 YBX3P16989 372 aaKnown RBP eCLIP17.37■□□□□ 0.37
PTCH1-222ENST00000551425 NBPF1Q3BBV0 1214 aa17.37■□□□□ 0.37
PTCH1-222ENST00000551425 SLC27A3Q5K4L6 730 aa17.37■□□□□ 0.37
PTCH1-222ENST00000551425 PNPLA7Q6ZV29 1317 aa17.37■□□□□ 0.37
PTCH1-222ENST00000551425 NFAT5O94916 1531 aa17.37■□□□□ 0.37
PTCH1-222ENST00000551425 QRICH2Q9H0J4 1663 aa17.36■□□□□ 0.37
PTCH1-222ENST00000551425 QSER1Q2KHR3 1735 aa17.36■□□□□ 0.37
PTCH1-222ENST00000551425 RGPD5Q99666 1765 aa17.36■□□□□ 0.37
PTCH1-222ENST00000551425 BTAF1O14981 1849 aa17.36■□□□□ 0.37
PTCH1-222ENST00000551425 TTC21BQ7Z4L5 1316 aa17.36■□□□□ 0.37
PTCH1-222ENST00000551425 SOX12O15370 315 aa17.35■□□□□ 0.37
PTCH1-222ENST00000551425 IL2RBP14784 551 aa17.35■□□□□ 0.37
PTCH1-222ENST00000551425 HSPA6P17066 643 aa17.35■□□□□ 0.37
PTCH1-222ENST00000551425 ZNF692Q9BU19 519 aaPredicted RBP17.35■□□□□ 0.37
PTCH1-222ENST00000551425 ATP10DQ9P241 1426 aa17.35■□□□□ 0.37
PTCH1-222ENST00000551425 TTC21AQ8NDW8 1320 aa17.34■□□□□ 0.37
PTCH1-222ENST00000551425 ERBB3P21860 1342 aa17.33■□□□□ 0.36
PTCH1-222ENST00000551425 GPBP1L1Q9HC44 474 aaPredicted RBP17.32■□□□□ 0.36
PTCH1-222ENST00000551425 TFCP2L1Q9NZI6 479 aa17.32■□□□□ 0.36
PTCH1-222ENST00000551425 NLRP2Q9NX02 1062 aa17.31■□□□□ 0.36
PTCH1-222ENST00000551425 ADCY9O60503 1353 aa17.29■□□□□ 0.36
PTCH1-222ENST00000551425 EVC2Q86UK5 1308 aa17.29■□□□□ 0.36
PTCH1-222ENST00000551425 KCNQ4P56696 695 aa17.26■□□□□ 0.35
PTCH1-222ENST00000551425 USP31Q70CQ4 1352 aa17.26■□□□□ 0.35
PTCH1-222ENST00000551425 TUBGCP6Q96RT7 1819 aa17.26■□□□□ 0.35
PTCH1-222ENST00000551425 ANKRD24Q8TF21 1146 aa17.25■□□□□ 0.35
PTCH1-222ENST00000551425 CD2APQ9Y5K6 639 aa17.24■□□□□ 0.35
PTCH1-222ENST00000551425 KTN1Q86UP2 1357 aaKnown RBP17.24■□□□□ 0.35
PTCH1-222ENST00000551425 COL23A1Q86Y22 540 aaPredicted RBP17.23■□□□□ 0.35
PTCH1-222ENST00000551425 DDX54Q8TDD1 881 aaKnown RBP17.23■□□□□ 0.35
PTCH1-222ENST00000551425 ANKRD36BQ8N2N9 1353 aa17.23■□□□□ 0.35
PTCH1-222ENST00000551425 PRIM1P49642 420 aaKnown RBP17.22■□□□□ 0.35
PTCH1-222ENST00000551425 NSD2O96028 1365 aa17.21■□□□□ 0.35
PTCH1-222ENST00000551425 MSH5O43196 834 aa17.21■□□□□ 0.35
PTCH1-222ENST00000551425 ZNF526Q8TF50 670 aaPredicted RBP17.21■□□□□ 0.35
PTCH1-222ENST00000551425 USP54Q70EL1 1684 aa17.2■□□□□ 0.34
PTCH1-222ENST00000551425 SYTL4Q96C24 671 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-222ENST00000551425 CCNL1Q9UK58 526 aaPredicted RBP17.2■□□□□ 0.34
PTCH1-222ENST00000551425 LY75O60449 1722 aa17.2■□□□□ 0.34
PTCH1-222ENST00000551425 MSL1Q68DK7 614 aa17.19■□□□□ 0.34
PTCH1-222ENST00000551425 KAT6BQ8WYB5 2073 aa17.19■□□□□ 0.34
PTCH1-222ENST00000551425 KIF3CO14782 793 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms