RNA–Protein interactions for RNA: ENST00000550477.5

SMARCD1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 3

Gene SMARCD1, Length 911 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-209	ENST00000550477	SOX12	O15370	315 aa		32.8	■■■□□ 2.84
SMARCD1-209	ENST00000550477	CPSF1	Q10570	1443 aa	Known RBP	32.79	■■■□□ 2.84
SMARCD1-209	ENST00000550477	AXIN2	Q9Y2T1	843 aa		32.79	■■■□□ 2.84
SMARCD1-209	ENST00000550477	CARD11	Q9BXL7	1154 aa		32.78	■■■□□ 2.84
SMARCD1-209	ENST00000550477	AKAP12	Q02952	1782 aa		32.76	■■■□□ 2.84
SMARCD1-209	ENST00000550477	PLSCR1	O15162	318 aa		32.76	■■■□□ 2.83
SMARCD1-209	ENST00000550477	CARD10	Q9BWT7	1032 aa		32.76	■■■□□ 2.83
SMARCD1-209	ENST00000550477	SBNO2	Q9Y2G9	1366 aa		32.74	■■■□□ 2.83
SMARCD1-209	ENST00000550477	COL18A1	P39060	1754 aa		32.74	■■■□□ 2.83
SMARCD1-209	ENST00000550477	RREB1	Q92766	1687 aa		32.74	■■■□□ 2.83
SMARCD1-209	ENST00000550477	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.73	■■■□□ 2.83
SMARCD1-209	ENST00000550477	EXOC5	O00471	708 aa		32.72	■■■□□ 2.83
SMARCD1-209	ENST00000550477	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	32.72	■■■□□ 2.83
SMARCD1-209	ENST00000550477	TMC1	Q8TDI8	760 aa		32.72	■■■□□ 2.83
SMARCD1-209	ENST00000550477	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	32.7	■■■□□ 2.83
SMARCD1-209	ENST00000550477	NUP188	Q5SRE5	1749 aa		32.7	■■■□□ 2.83
SMARCD1-209	ENST00000550477	TONSL	Q96HA7	1378 aa		32.69	■■■□□ 2.82
SMARCD1-209	ENST00000550477	CCDC7	Q96M83	1385 aa		32.69	■■■□□ 2.82
SMARCD1-209	ENST00000550477	SPON1	Q9HCB6	807 aa		32.68	■■■□□ 2.82
SMARCD1-209	ENST00000550477	PPP1R1B	Q9UD71	204 aa	Predicted RBP	32.68	■■■□□ 2.82
SMARCD1-209	ENST00000550477	LRRC37A3	O60309	1634 aa		32.68	■■■□□ 2.82
SMARCD1-209	ENST00000550477	MARCH10	Q8NA82	808 aa	Predicted RBP	32.67	■■■□□ 2.82
SMARCD1-209	ENST00000550477	PEAK1	Q9H792	1746 aa		32.65	■■■□□ 2.82
SMARCD1-209	ENST00000550477	TERF2IP	Q9NYB0	399 aa		32.65	■■■□□ 2.82
SMARCD1-209	ENST00000550477	RGPD5	Q99666	1765 aa		32.65	■■■□□ 2.82
SMARCD1-209	ENST00000550477	BCL9	O00512	1426 aa		32.64	■■■□□ 2.82
SMARCD1-209	ENST00000550477	ABCC6	O95255	1503 aa		32.64	■■■□□ 2.82
SMARCD1-209	ENST00000550477	USP31	Q70CQ4	1352 aa		32.64	■■■□□ 2.82
SMARCD1-209	ENST00000550477	SBF2	Q86WG5	1849 aa		32.64	■■■□□ 2.82
SMARCD1-209	ENST00000550477	KCNQ2	O43526	872 aa		32.63	■■■□□ 2.81
SMARCD1-209	ENST00000550477	DCAF8L1	A6NGE4	600 aa		32.62	■■■□□ 2.81
SMARCD1-209	ENST00000550477	SLC24A1	O60721	1099 aa		32.62	■■■□□ 2.81
SMARCD1-209	ENST00000550477	PUS7	Q96PZ0	661 aa	Known RBP	32.62	■■■□□ 2.81
SMARCD1-209	ENST00000550477	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.62	■■■□□ 2.81
SMARCD1-209	ENST00000550477	RGPD4	Q7Z3J3	1758 aa		32.62	■■■□□ 2.81
SMARCD1-209	ENST00000550477	NFAT5	O94916	1531 aa		32.61	■■■□□ 2.81
SMARCD1-209	ENST00000550477	WNK3	Q9BYP7	1800 aa		32.61	■■■□□ 2.81
SMARCD1-209	ENST00000550477	MON2	Q7Z3U7	1717 aa		32.61	■■■□□ 2.81
SMARCD1-209	ENST00000550477	NLRP2	Q9NX02	1062 aa		32.6	■■■□□ 2.81
SMARCD1-209	ENST00000550477	NME9	Q86XW9	330 aa		32.59	■■■□□ 2.81
SMARCD1-209	ENST00000550477	SLC12A5	Q9H2X9	1139 aa		32.59	■■■□□ 2.81
SMARCD1-209	ENST00000550477	EDC4	Q6P2E9	1401 aa	Known RBP	32.55	■■■□□ 2.8
SMARCD1-209	ENST00000550477	ERBB3	P21860	1342 aa		32.54	■■■□□ 2.8
SMARCD1-209	ENST00000550477	IL2RB	P14784	551 aa		32.53	■■■□□ 2.8
SMARCD1-209	ENST00000550477	PTF1A	Q7RTS3	328 aa		32.53	■■■□□ 2.8
SMARCD1-209	ENST00000550477	STK32B	Q9NY57	414 aa		32.53	■■■□□ 2.8
SMARCD1-209	ENST00000550477	CD163L1	Q9NR16	1453 aa		32.51	■■■□□ 2.79
SMARCD1-209	ENST00000550477	TXNRD1	Q16881	649 aa		32.51	■■■□□ 2.79
SMARCD1-209	ENST00000550477	ANKRD24	Q8TF21	1146 aa		32.51	■■■□□ 2.79
SMARCD1-209	ENST00000550477	TNS2	Q63HR2	1409 aa		32.51	■■■□□ 2.79
SMARCD1-209	ENST00000550477	USP54	Q70EL1	1684 aa		32.5	■■■□□ 2.79
SMARCD1-209	ENST00000550477	NINL	Q9Y2I6	1382 aa		32.49	■■■□□ 2.79
SMARCD1-209	ENST00000550477	PROM2	Q8N271	834 aa		32.49	■■■□□ 2.79
SMARCD1-209	ENST00000550477	ANO8	Q9HCE9	1232 aa	Predicted RBP	32.47	■■■□□ 2.79
SMARCD1-209	ENST00000550477	LTN1	O94822	1766 aa		32.47	■■■□□ 2.79
SMARCD1-209	ENST00000550477		A0A1W2PP64	1363 aa		32.46	■■■□□ 2.79
SMARCD1-209	ENST00000550477	KAT6B	Q8WYB5	2073 aa		32.46	■■■□□ 2.79
SMARCD1-209	ENST00000550477	COG3	Q96JB2	828 aa		32.44	■■■□□ 2.78
SMARCD1-209	ENST00000550477	ST20-MTHFS	A0A0A6YYL1	179 aa		32.43	■■■□□ 2.78
SMARCD1-209	ENST00000550477	SLC15A2	Q16348	729 aa		32.43	■■■□□ 2.78
SMARCD1-209	ENST00000550477	IP6K1	Q92551	441 aa		32.43	■■■□□ 2.78
SMARCD1-209	ENST00000550477	ACSBG1	Q96GR2	724 aa		32.43	■■■□□ 2.78
SMARCD1-209	ENST00000550477	ZBTB7A	O95365	584 aa		32.39	■■■□□ 2.78
SMARCD1-209	ENST00000550477	YY1	P25490	414 aa		32.39	■■■□□ 2.78
SMARCD1-209	ENST00000550477	AMPH	P49418	695 aa		32.37	■■■□□ 2.77
SMARCD1-209	ENST00000550477	LTV1	Q96GA3	475 aa	Predicted RBP	32.37	■■■□□ 2.77
SMARCD1-209	ENST00000550477	TESK2	Q96S53	571 aa		32.37	■■■□□ 2.77
SMARCD1-209	ENST00000550477	NHS	Q6T4R5	1651 aa		32.35	■■■□□ 2.77
SMARCD1-209	ENST00000550477	ATF5	Q9Y2D1	282 aa	Predicted RBP	32.34	■■■□□ 2.77
SMARCD1-209	ENST00000550477	CASZ1	Q86V15	1759 aa		32.34	■■■□□ 2.77
SMARCD1-209	ENST00000550477	TMF1	P82094	1093 aa		32.33	■■■□□ 2.77
SMARCD1-209	ENST00000550477	DDX54	Q8TDD1	881 aa	Known RBP	32.33	■■■□□ 2.77
SMARCD1-209	ENST00000550477	PDGFD	Q9GZP0	370 aa	Predicted RBP	32.33	■■■□□ 2.77
SMARCD1-209	ENST00000550477	MTFR1L	Q9H019	292 aa		32.33	■■■□□ 2.77
SMARCD1-209	ENST00000550477	HOXC9	P31274	260 aa		32.29	■■■□□ 2.76
SMARCD1-209	ENST00000550477	CDCA8	Q53HL2	280 aa		32.29	■■■□□ 2.76
SMARCD1-209	ENST00000550477	FAM208A	Q9UK61	1670 aa	Known RBP	32.29	■■■□□ 2.76
SMARCD1-209	ENST00000550477	MAP3K19	Q56UN5	1328 aa		32.28	■■■□□ 2.76
SMARCD1-209	ENST00000550477	ANKRD36B	Q8N2N9	1353 aa		32.28	■■■□□ 2.76
SMARCD1-209	ENST00000550477	PTGER2	P43116	358 aa		32.27	■■■□□ 2.76
SMARCD1-209	ENST00000550477	TRIM26	Q12899	539 aa	Predicted RBP	32.27	■■■□□ 2.76
SMARCD1-209	ENST00000550477	SLC27A3	Q5K4L6	730 aa		32.25	■■■□□ 2.75
SMARCD1-209	ENST00000550477	BTAF1	O14981	1849 aa		32.24	■■■□□ 2.75
SMARCD1-209	ENST00000550477	SYTL4	Q96C24	671 aa	Predicted RBP	32.23	■■■□□ 2.75
SMARCD1-209	ENST00000550477	ZCRB1	Q8TBF4	217 aa	Known RBP	32.22	■■■□□ 2.75
SMARCD1-209	ENST00000550477	RTL1	A6NKG5	1358 aa		32.2	■■■□□ 2.75
SMARCD1-209	ENST00000550477	SMG6	Q86US8	1419 aa	Known RBP	32.19	■■■□□ 2.74
SMARCD1-209	ENST00000550477	FYB1	O15117	783 aa		32.19	■■■□□ 2.74
SMARCD1-209	ENST00000550477	SYT17	Q9BSW7	474 aa		32.19	■■■□□ 2.74
SMARCD1-209	ENST00000550477	FHDC1	Q9C0D6	1143 aa	Predicted RBP	32.19	■■■□□ 2.74
SMARCD1-209	ENST00000550477	USP47	Q96K76	1375 aa		32.19	■■■□□ 2.74
SMARCD1-209	ENST00000550477	ARX	Q96QS3	562 aa		32.18	■■■□□ 2.74
SMARCD1-209	ENST00000550477	GGNBP2	Q9H3C7	697 aa		32.18	■■■□□ 2.74
SMARCD1-209	ENST00000550477	CGNL1	Q0VF96	1302 aa		32.18	■■■□□ 2.74
SMARCD1-209	ENST00000550477	FBLN1	P23142	703 aa		32.17	■■■□□ 2.74
SMARCD1-209	ENST00000550477	PRIM1	P49642	420 aa	Known RBP	32.17	■■■□□ 2.74
SMARCD1-209	ENST00000550477	SLC16A10	Q8TF71	515 aa		32.17	■■■□□ 2.74
SMARCD1-209	ENST00000550477	MYOM1	P52179	1685 aa		32.16	■■■□□ 2.74
SMARCD1-209	ENST00000550477	RRS1	Q15050	365 aa	Known RBP	32.16	■■■□□ 2.74
SMARCD1-209	ENST00000550477	RAPGEF4	Q8WZA2	1011 aa		32.16	■■■□□ 2.74

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms