RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 SBF2Q86WG5 1849 aa24.74■■□□□ 1.55
CHMP1A-205ENST00000548650 ARHGEF25Q86VW2 580 aa24.73■■□□□ 1.55
CHMP1A-205ENST00000548650 KCNH5Q8NCM2 988 aa24.73■■□□□ 1.55
CHMP1A-205ENST00000548650 PARD3Q8TEW0 1356 aa24.72■■□□□ 1.55
CHMP1A-205ENST00000548650 WDR17Q8IZU2 1322 aa24.72■■□□□ 1.55
CHMP1A-205ENST00000548650 PSDA5PKW4 1024 aaPredicted RBP24.72■■□□□ 1.55
CHMP1A-205ENST00000548650 AXIN2Q9Y2T1 843 aa24.72■■□□□ 1.55
CHMP1A-205ENST00000548650 USP31Q70CQ4 1352 aa24.71■■□□□ 1.55
CHMP1A-205ENST00000548650 EZH2Q15910 746 aaKnown RBP24.71■■□□□ 1.55
CHMP1A-205ENST00000548650 RGPD3A6NKT7 1758 aaPredicted RBP24.71■■□□□ 1.55
CHMP1A-205ENST00000548650 RGPD4Q7Z3J3 1758 aa24.71■■□□□ 1.55
CHMP1A-205ENST00000548650 OVOS2A0A0G2JMS6 1433 aa24.7■■□□□ 1.55
CHMP1A-205ENST00000548650 OVOS2A0A0J9YW53 1432 aa24.7■■□□□ 1.55
CHMP1A-205ENST00000548650 OVOS2Q6IE36 1432 aa24.7■■□□□ 1.55
CHMP1A-205ENST00000548650 CAMKK2Q96RR4 588 aa24.7■■□□□ 1.54
CHMP1A-205ENST00000548650 SOX12O15370 315 aa24.69■■□□□ 1.54
CHMP1A-205ENST00000548650 TOM1L2Q6ZVM7 507 aa24.69■■□□□ 1.54
CHMP1A-205ENST00000548650 EDC4Q6P2E9 1401 aaKnown RBP24.69■■□□□ 1.54
CHMP1A-205ENST00000548650 A0A1W2PP64 1363 aa24.67■■□□□ 1.54
CHMP1A-205ENST00000548650 APBA3O96018 575 aa24.67■■□□□ 1.54
CHMP1A-205ENST00000548650 TRIM26Q12899 539 aaPredicted RBP24.67■■□□□ 1.54
CHMP1A-205ENST00000548650 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.66■■□□□ 1.54
CHMP1A-205ENST00000548650 NME9Q86XW9 330 aa24.65■■□□□ 1.54
CHMP1A-205ENST00000548650 TMC1Q8TDI8 760 aa24.64■■□□□ 1.54
CHMP1A-205ENST00000548650 TESK2Q96S53 571 aa24.64■■□□□ 1.54
CHMP1A-205ENST00000548650 SLC12A5Q9H2X9 1139 aa24.64■■□□□ 1.54
CHMP1A-205ENST00000548650 R3HDM1Q15032 1099 aaKnown RBP24.63■■□□□ 1.53
CHMP1A-205ENST00000548650 PUS7Q96PZ0 661 aaKnown RBP24.63■■□□□ 1.53
CHMP1A-205ENST00000548650 DDB1Q16531 1140 aa24.62■■□□□ 1.53
CHMP1A-205ENST00000548650 HDGFL2Q7Z4V5 671 aaPredicted RBP24.62■■□□□ 1.53
CHMP1A-205ENST00000548650 NINLQ9Y2I6 1382 aa24.62■■□□□ 1.53
CHMP1A-205ENST00000548650 C11orf95C9JLR9 678 aaPredicted RBP24.61■■□□□ 1.53
CHMP1A-205ENST00000548650 CARD10Q9BWT7 1032 aa24.61■■□□□ 1.53
CHMP1A-205ENST00000548650 CDCA7Q9BWT1 371 aaPredicted RBP24.6■■□□□ 1.53
CHMP1A-205ENST00000548650 BCL9O00512 1426 aa24.6■■□□□ 1.53
CHMP1A-205ENST00000548650 TNS2Q63HR2 1409 aa24.6■■□□□ 1.53
CHMP1A-205ENST00000548650 CCDC7Q96M83 1385 aa24.59■■□□□ 1.53
CHMP1A-205ENST00000548650 ST20-MTHFSA0A0A6YYL1 179 aa24.59■■□□□ 1.53
CHMP1A-205ENST00000548650 CSB-PGBD3P0DP91 1061 aa24.59■■□□□ 1.53
CHMP1A-205ENST00000548650 TERF2IPQ9NYB0 399 aa24.59■■□□□ 1.53
CHMP1A-205ENST00000548650 ERBB3P21860 1342 aa24.59■■□□□ 1.53
CHMP1A-205ENST00000548650 FAM208AQ9UK61 1670 aaKnown RBP24.57■■□□□ 1.52
CHMP1A-205ENST00000548650 MARCH10Q8NA82 808 aaPredicted RBP24.56■■□□□ 1.52
CHMP1A-205ENST00000548650 NHSQ6T4R5 1651 aa24.55■■□□□ 1.52
CHMP1A-205ENST00000548650 USP47Q96K76 1375 aa24.54■■□□□ 1.52
CHMP1A-205ENST00000548650 PTF1AQ7RTS3 328 aa24.52■■□□□ 1.52
CHMP1A-205ENST00000548650 ANKRD36BQ8N2N9 1353 aa24.51■■□□□ 1.51
CHMP1A-205ENST00000548650 MYOM1P52179 1685 aa24.5■■□□□ 1.51
CHMP1A-205ENST00000548650 BCL11BQ9C0K0 894 aaPredicted RBP24.5■■□□□ 1.51
CHMP1A-205ENST00000548650 SLC24A1O60721 1099 aa24.49■■□□□ 1.51
CHMP1A-205ENST00000548650 CASZ1Q86V15 1759 aa24.49■■□□□ 1.51
CHMP1A-205ENST00000548650 KIF20BQ96Q89 1820 aa24.49■■□□□ 1.51
CHMP1A-205ENST00000548650 ANKRD24Q8TF21 1146 aa24.48■■□□□ 1.51
CHMP1A-205ENST00000548650 PLSCR1O15162 318 aa24.47■■□□□ 1.51
CHMP1A-205ENST00000548650 NBPF14Q5TI25 921 aa24.47■■□□□ 1.51
CHMP1A-205ENST00000548650 NLRP2Q9NX02 1062 aa24.47■■□□□ 1.51
CHMP1A-205ENST00000548650 EXOC5O00471 708 aa24.46■■□□□ 1.51
CHMP1A-205ENST00000548650 RGPD2P0DJD1 1756 aa24.46■■□□□ 1.51
CHMP1A-205ENST00000548650 BTAF1O14981 1849 aa24.44■■□□□ 1.5
CHMP1A-205ENST00000548650 IL2RBP14784 551 aa24.43■■□□□ 1.5
CHMP1A-205ENST00000548650 TMF1P82094 1093 aa24.43■■□□□ 1.5
CHMP1A-205ENST00000548650 ANO8Q9HCE9 1232 aaPredicted RBP24.43■■□□□ 1.5
CHMP1A-205ENST00000548650 SHANK3Q9BYB0 1731 aa24.43■■□□□ 1.5
CHMP1A-205ENST00000548650 MAP3K19Q56UN5 1328 aa24.42■■□□□ 1.5
CHMP1A-205ENST00000548650 IP6K1Q92551 441 aa24.42■■□□□ 1.5
CHMP1A-205ENST00000548650 COG3Q96JB2 828 aa24.42■■□□□ 1.5
CHMP1A-205ENST00000548650 PAPPAQ13219 1627 aa24.4■■□□□ 1.5
CHMP1A-205ENST00000548650 PROM2Q8N271 834 aa24.4■■□□□ 1.5
CHMP1A-205ENST00000548650 RTL1A6NKG5 1358 aa24.4■■□□□ 1.5
CHMP1A-205ENST00000548650 KCNQ2O43526 872 aa24.37■■□□□ 1.49
CHMP1A-205ENST00000548650 HOXC9P31274 260 aa24.37■■□□□ 1.49
CHMP1A-205ENST00000548650 DOT1LQ8TEK3 1739 aa24.37■■□□□ 1.49
CHMP1A-205ENST00000548650 CLSPNQ9HAW4 1339 aa24.36■■□□□ 1.49
CHMP1A-205ENST00000548650 FBLN1P23142 703 aa24.36■■□□□ 1.49
CHMP1A-205ENST00000548650 LTV1Q96GA3 475 aaPredicted RBP24.35■■□□□ 1.49
CHMP1A-205ENST00000548650 TIMELESSQ9UNS1 1208 aa24.35■■□□□ 1.49
CHMP1A-205ENST00000548650 FYB1O15117 783 aa24.34■■□□□ 1.49
CHMP1A-205ENST00000548650 TXNRD1Q16881 649 aa24.34■■□□□ 1.49
CHMP1A-205ENST00000548650 ACSBG1Q96GR2 724 aa24.34■■□□□ 1.49
CHMP1A-205ENST00000548650 KAT6BQ8WYB5 2073 aa24.34■■□□□ 1.49
CHMP1A-205ENST00000548650 MEGF6O75095 1541 aa24.34■■□□□ 1.49
CHMP1A-205ENST00000548650 CDCA8Q53HL2 280 aa24.33■■□□□ 1.49
CHMP1A-205ENST00000548650 ANKRD26Q9UPS8 1709 aa24.32■■□□□ 1.48
CHMP1A-205ENST00000548650 AMPHP49418 695 aa24.32■■□□□ 1.48
CHMP1A-205ENST00000548650 GGNBP2Q9H3C7 697 aa24.32■■□□□ 1.48
CHMP1A-205ENST00000548650 RRS1Q15050 365 aaKnown RBP24.31■■□□□ 1.48
CHMP1A-205ENST00000548650 SPON1Q9HCB6 807 aa24.31■■□□□ 1.48
CHMP1A-205ENST00000548650 NSD3Q9BZ95 1437 aa24.3■■□□□ 1.48
CHMP1A-205ENST00000548650 PDGFDQ9GZP0 370 aaPredicted RBP24.29■■□□□ 1.48
CHMP1A-205ENST00000548650 PCGF6Q9BYE7 350 aa24.27■■□□□ 1.48
CHMP1A-205ENST00000548650 SMG6Q86US8 1419 aaKnown RBP24.27■■□□□ 1.48
CHMP1A-205ENST00000548650 STK32BQ9NY57 414 aa24.26■■□□□ 1.47
CHMP1A-205ENST00000548650 LY75O60449 1722 aa24.26■■□□□ 1.47
CHMP1A-205ENST00000548650 QSER1Q2KHR3 1735 aa24.25■■□□□ 1.47
CHMP1A-205ENST00000548650 SLC15A2Q16348 729 aa24.25■■□□□ 1.47
CHMP1A-205ENST00000548650 CARD14Q9BXL6 1004 aa24.25■■□□□ 1.47
CHMP1A-205ENST00000548650 FLT4P35916 1363 aa24.25■■□□□ 1.47
CHMP1A-205ENST00000548650 KIF24Q5T7B8 1368 aa24.25■■□□□ 1.47
CHMP1A-205ENST00000548650 DDX54Q8TDD1 881 aaKnown RBP24.24■■□□□ 1.47
CHMP1A-205ENST00000548650 INSRP06213 1382 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms