RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 DISP2A7MBM2 1401 aa18.89■□□□□ 0.61
CPSF6-204ENST00000547486 PUS7Q96PZ0 661 aaKnown RBP18.88■□□□□ 0.61
CPSF6-204ENST00000547486 WDR17Q8IZU2 1322 aa18.88■□□□□ 0.61
CPSF6-204ENST00000547486 USP31Q70CQ4 1352 aa18.87■□□□□ 0.61
CPSF6-204ENST00000547486 HDGFL2Q7Z4V5 671 aaPredicted RBP18.87■□□□□ 0.61
CPSF6-204ENST00000547486 RGPD1P0DJD0 1748 aa18.86■□□□□ 0.61
CPSF6-204ENST00000547486 NFAT5O94916 1531 aa18.85■□□□□ 0.61
CPSF6-204ENST00000547486 TNS1Q9HBL0 1735 aaKnown RBP18.84■□□□□ 0.61
CPSF6-204ENST00000547486 CSB-PGBD3P0DP91 1061 aa18.84■□□□□ 0.61
CPSF6-204ENST00000547486 R3HDM1Q15032 1099 aaKnown RBP18.84■□□□□ 0.61
CPSF6-204ENST00000547486 DDB1Q16531 1140 aa18.84■□□□□ 0.61
CPSF6-204ENST00000547486 CARD10Q9BWT7 1032 aa18.84■□□□□ 0.61
CPSF6-204ENST00000547486 TERF2IPQ9NYB0 399 aa18.84■□□□□ 0.61
CPSF6-204ENST00000547486 A0A1W2PP64 1363 aa18.83■□□□□ 0.61
CPSF6-204ENST00000547486 MARCH10Q8NA82 808 aaPredicted RBP18.82■□□□□ 0.6
CPSF6-204ENST00000547486 MON2Q7Z3U7 1717 aa18.82■□□□□ 0.6
CPSF6-204ENST00000547486 PTF1AQ7RTS3 328 aa18.81■□□□□ 0.6
CPSF6-204ENST00000547486 EDC4Q6P2E9 1401 aaKnown RBP18.81■□□□□ 0.6
CPSF6-204ENST00000547486 PARP4Q9UKK3 1724 aaKnown RBP18.8■□□□□ 0.6
CPSF6-204ENST00000547486 CDCA7Q9BWT1 371 aaPredicted RBP18.8■□□□□ 0.6
CPSF6-204ENST00000547486 PARD3Q8TEW0 1356 aa18.79■□□□□ 0.6
CPSF6-204ENST00000547486 OVOS2A0A0G2JMS6 1433 aa18.78■□□□□ 0.6
CPSF6-204ENST00000547486 OVOS2A0A0J9YW53 1432 aa18.78■□□□□ 0.6
CPSF6-204ENST00000547486 OVOS2Q6IE36 1432 aa18.78■□□□□ 0.6
CPSF6-204ENST00000547486 C11orf95C9JLR9 678 aaPredicted RBP18.78■□□□□ 0.6
CPSF6-204ENST00000547486 EXOC5O00471 708 aa18.77■□□□□ 0.6
CPSF6-204ENST00000547486 SLC24A1O60721 1099 aa18.77■□□□□ 0.6
CPSF6-204ENST00000547486 RGPD5Q99666 1765 aa18.77■□□□□ 0.6
CPSF6-204ENST00000547486 ERBB3P21860 1342 aa18.76■□□□□ 0.59
CPSF6-204ENST00000547486 LRRC37A3O60309 1634 aa18.76■□□□□ 0.59
CPSF6-204ENST00000547486 FBLN1P23142 703 aa18.76■□□□□ 0.59
CPSF6-204ENST00000547486 ANKRD24Q8TF21 1146 aa18.76■□□□□ 0.59
CPSF6-204ENST00000547486 NLRP2Q9NX02 1062 aa18.76■□□□□ 0.59
CPSF6-204ENST00000547486 PEAK1Q9H792 1746 aa18.76■□□□□ 0.59
CPSF6-204ENST00000547486 PCGF6Q9BYE7 350 aa18.75■□□□□ 0.59
CPSF6-204ENST00000547486 BCL11BQ9C0K0 894 aaPredicted RBP18.75■□□□□ 0.59
CPSF6-204ENST00000547486 USP47Q96K76 1375 aa18.75■□□□□ 0.59
CPSF6-204ENST00000547486 CCDC7Q96M83 1385 aa18.75■□□□□ 0.59
CPSF6-204ENST00000547486 NINLQ9Y2I6 1382 aa18.75■□□□□ 0.59
CPSF6-204ENST00000547486 PLSCR1O15162 318 aa18.74■□□□□ 0.59
CPSF6-204ENST00000547486 TMF1P82094 1093 aa18.74■□□□□ 0.59
CPSF6-204ENST00000547486 ABCC6O95255 1503 aa18.74■□□□□ 0.59
CPSF6-204ENST00000547486 USP54Q70EL1 1684 aa18.73■□□□□ 0.59
CPSF6-204ENST00000547486 IP6K1Q92551 441 aa18.73■□□□□ 0.59
CPSF6-204ENST00000547486 NBPF14Q5TI25 921 aa18.72■□□□□ 0.59
CPSF6-204ENST00000547486 PROM2Q8N271 834 aa18.72■□□□□ 0.59
CPSF6-204ENST00000547486 COG3Q96JB2 828 aa18.72■□□□□ 0.59
CPSF6-204ENST00000547486 BCL9O00512 1426 aa18.72■□□□□ 0.59
CPSF6-204ENST00000547486 ANKRD36BQ8N2N9 1353 aa18.71■□□□□ 0.59
CPSF6-204ENST00000547486 TIMELESSQ9UNS1 1208 aa18.71■□□□□ 0.59
CPSF6-204ENST00000547486 LRP5O75197 1615 aa18.71■□□□□ 0.58
CPSF6-204ENST00000547486 FYB1O15117 783 aa18.7■□□□□ 0.58
CPSF6-204ENST00000547486 KCNQ2O43526 872 aa18.7■□□□□ 0.58
CPSF6-204ENST00000547486 IL2RBP14784 551 aa18.7■□□□□ 0.58
CPSF6-204ENST00000547486 LTV1Q96GA3 475 aaPredicted RBP18.7■□□□□ 0.58
CPSF6-204ENST00000547486 MAP3K19Q56UN5 1328 aa18.7■□□□□ 0.58
CPSF6-204ENST00000547486 GGNBP2Q9H3C7 697 aa18.68■□□□□ 0.58
CPSF6-204ENST00000547486 RREB1Q92766 1687 aa18.68■□□□□ 0.58
CPSF6-204ENST00000547486 WNK3Q9BYP7 1800 aa18.67■□□□□ 0.58
CPSF6-204ENST00000547486 TNS2Q63HR2 1409 aa18.67■□□□□ 0.58
CPSF6-204ENST00000547486 NUP188Q5SRE5 1749 aa18.67■□□□□ 0.58
CPSF6-204ENST00000547486 HOXC9P31274 260 aa18.67■□□□□ 0.58
CPSF6-204ENST00000547486 LTN1O94822 1766 aa18.66■□□□□ 0.58
CPSF6-204ENST00000547486 SBF2Q86WG5 1849 aa18.66■□□□□ 0.58
CPSF6-204ENST00000547486 ACSBG1Q96GR2 724 aa18.66■□□□□ 0.58
CPSF6-204ENST00000547486 CARD14Q9BXL6 1004 aa18.66■□□□□ 0.58
CPSF6-204ENST00000547486 ANO8Q9HCE9 1232 aaPredicted RBP18.66■□□□□ 0.58
CPSF6-204ENST00000547486 CLSPNQ9HAW4 1339 aa18.66■□□□□ 0.58
CPSF6-204ENST00000547486 AMPHP49418 695 aa18.65■□□□□ 0.58
CPSF6-204ENST00000547486 RRS1Q15050 365 aaKnown RBP18.65■□□□□ 0.58
CPSF6-204ENST00000547486 CDCA8Q53HL2 280 aa18.64■□□□□ 0.57
CPSF6-204ENST00000547486 TXNRD1Q16881 649 aa18.63■□□□□ 0.57
CPSF6-204ENST00000547486 PDGFDQ9GZP0 370 aaPredicted RBP18.62■□□□□ 0.57
CPSF6-204ENST00000547486 DDX54Q8TDD1 881 aaKnown RBP18.61■□□□□ 0.57
CPSF6-204ENST00000547486 NBPF6Q5VWK0 638 aa18.59■□□□□ 0.57
CPSF6-204ENST00000547486 NBPF4Q96M43 638 aa18.59■□□□□ 0.57
CPSF6-204ENST00000547486 HSP90AB2PQ58FF8 381 aa18.58■□□□□ 0.56
CPSF6-204ENST00000547486 SPON1Q9HCB6 807 aa18.58■□□□□ 0.56
CPSF6-204ENST00000547486 RGPD3A6NKT7 1758 aaPredicted RBP18.57■□□□□ 0.56
CPSF6-204ENST00000547486 RGPD4Q7Z3J3 1758 aa18.57■□□□□ 0.56
CPSF6-204ENST00000547486 USHBP1Q8N6Y0 703 aa18.56■□□□□ 0.56
CPSF6-204ENST00000547486 RTL1A6NKG5 1358 aa18.55■□□□□ 0.56
CPSF6-204ENST00000547486 SLC15A2Q16348 729 aa18.55■□□□□ 0.56
CPSF6-204ENST00000547486 ZCRB1Q8TBF4 217 aaKnown RBP18.55■□□□□ 0.56
CPSF6-204ENST00000547486 STK32BQ9NY57 414 aa18.55■□□□□ 0.56
CPSF6-204ENST00000547486 NSD3Q9BZ95 1437 aa18.55■□□□□ 0.56
CPSF6-204ENST00000547486 CCER1Q8TC90 406 aaPredicted RBP18.54■□□□□ 0.56
CPSF6-204ENST00000547486 LRRC4BQ9NT99 713 aa18.54■□□□□ 0.56
CPSF6-204ENST00000547486 ZBTB7AO95365 584 aa18.53■□□□□ 0.56
CPSF6-204ENST00000547486 PRIM1P49642 420 aaKnown RBP18.53■□□□□ 0.56
CPSF6-204ENST00000547486 EMILIN1Q9Y6C2 1016 aa18.53■□□□□ 0.56
CPSF6-204ENST00000547486 NHSQ6T4R5 1651 aa18.53■□□□□ 0.56
CPSF6-204ENST00000547486 MEGF6O75095 1541 aa18.53■□□□□ 0.56
CPSF6-204ENST00000547486 INSRP06213 1382 aa18.53■□□□□ 0.56
CPSF6-204ENST00000547486 HSPA5P11021 654 aaKnown RBP18.52■□□□□ 0.56
CPSF6-204ENST00000547486 POLR3GLQ9BT43 218 aa18.52■□□□□ 0.56
CPSF6-204ENST00000547486 FAM208AQ9UK61 1670 aaKnown RBP18.51■□□□□ 0.55
CPSF6-204ENST00000547486 MYOM1P52179 1685 aa18.5■□□□□ 0.55
CPSF6-204ENST00000547486 EIF4G2P78344 907 aaKnown RBP eCLIP18.5■□□□□ 0.55
CPSF6-204ENST00000547486 SYTL4Q96C24 671 aaPredicted RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms