RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 TERF2IPQ9NYB0 399 aa32.06■■■□□ 2.72
CHD4-214ENST00000545942 USP31Q70CQ4 1352 aa32.06■■■□□ 2.72
CHD4-214ENST00000545942 WDR17Q8IZU2 1322 aa32.06■■■□□ 2.72
CHD4-214ENST00000545942 TRIM37O94972 964 aa32.05■■■□□ 2.72
CHD4-214ENST00000545942 NFAT5O94916 1531 aa32.04■■■□□ 2.72
CHD4-214ENST00000545942 NME9Q86XW9 330 aa32.03■■■□□ 2.72
CHD4-214ENST00000545942 EDC4Q6P2E9 1401 aaKnown RBP32.03■■■□□ 2.72
CHD4-214ENST00000545942 A0A1W2PP64 1363 aa32.02■■■□□ 2.72
CHD4-214ENST00000545942 TNS1Q9HBL0 1735 aaKnown RBP32.01■■■□□ 2.72
CHD4-214ENST00000545942 NINLQ9Y2I6 1382 aa32.01■■■□□ 2.71
CHD4-214ENST00000545942 PARP4Q9UKK3 1724 aaKnown RBP32.01■■■□□ 2.71
CHD4-214ENST00000545942 CSB-PGBD3P0DP91 1061 aa31.99■■■□□ 2.71
CHD4-214ENST00000545942 ABCC6O95255 1503 aa31.98■■■□□ 2.71
CHD4-214ENST00000545942 USP54Q70EL1 1684 aa31.97■■■□□ 2.71
CHD4-214ENST00000545942 C11orf95C9JLR9 678 aaPredicted RBP31.97■■■□□ 2.71
CHD4-214ENST00000545942 APBA3O96018 575 aa31.97■■■□□ 2.71
CHD4-214ENST00000545942 EZH2Q15910 746 aaKnown RBP31.96■■■□□ 2.71
CHD4-214ENST00000545942 DDB1Q16531 1140 aa31.96■■■□□ 2.71
CHD4-214ENST00000545942 CDCA7Q9BWT1 371 aaPredicted RBP31.96■■■□□ 2.71
CHD4-214ENST00000545942 CARD10Q9BWT7 1032 aa31.96■■■□□ 2.71
CHD4-214ENST00000545942 CAMKK2Q96RR4 588 aa31.95■■■□□ 2.7
CHD4-214ENST00000545942 USP47Q96K76 1375 aa31.94■■■□□ 2.7
CHD4-214ENST00000545942 TIMELESSQ9UNS1 1208 aa31.93■■■□□ 2.7
CHD4-214ENST00000545942 PARD3Q8TEW0 1356 aa31.93■■■□□ 2.7
CHD4-214ENST00000545942 OVOS2A0A0G2JMS6 1433 aa31.92■■■□□ 2.7
CHD4-214ENST00000545942 OVOS2A0A0J9YW53 1432 aa31.92■■■□□ 2.7
CHD4-214ENST00000545942 OVOS2Q6IE36 1432 aa31.92■■■□□ 2.7
CHD4-214ENST00000545942 CLSPNQ9HAW4 1339 aa31.92■■■□□ 2.7
CHD4-214ENST00000545942 LRRC37A3O60309 1634 aa31.91■■■□□ 2.7
CHD4-214ENST00000545942 PSDA5PKW4 1024 aaPredicted RBP31.91■■■□□ 2.7
CHD4-214ENST00000545942 TMF1P82094 1093 aa31.9■■■□□ 2.7
CHD4-214ENST00000545942 RGPD5Q99666 1765 aa31.9■■■□□ 2.7
CHD4-214ENST00000545942 PCGF6Q9BYE7 350 aa31.9■■■□□ 2.7
CHD4-214ENST00000545942 CCDC7Q96M83 1385 aa31.89■■■□□ 2.7
CHD4-214ENST00000545942 ERBB3P21860 1342 aa31.86■■■□□ 2.69
CHD4-214ENST00000545942 WNK3Q9BYP7 1800 aa31.85■■■□□ 2.69
CHD4-214ENST00000545942 PEAK1Q9H792 1746 aa31.85■■■□□ 2.69
CHD4-214ENST00000545942 ANKRD36BQ8N2N9 1353 aa31.85■■■□□ 2.69
CHD4-214ENST00000545942 R3HDM1Q15032 1099 aaKnown RBP31.84■■■□□ 2.69
CHD4-214ENST00000545942 MARCH10Q8NA82 808 aaPredicted RBP31.82■■■□□ 2.68
CHD4-214ENST00000545942 COG3Q96JB2 828 aa31.82■■■□□ 2.68
CHD4-214ENST00000545942 NLRP2Q9NX02 1062 aa31.82■■■□□ 2.68
CHD4-214ENST00000545942 EXOC5O00471 708 aa31.81■■■□□ 2.68
CHD4-214ENST00000545942 CDCA8Q53HL2 280 aa31.81■■■□□ 2.68
CHD4-214ENST00000545942 LTN1O94822 1766 aa31.81■■■□□ 2.68
CHD4-214ENST00000545942 ANKRD24Q8TF21 1146 aa31.8■■■□□ 2.68
CHD4-214ENST00000545942 BCL9O00512 1426 aa31.8■■■□□ 2.68
CHD4-214ENST00000545942 LRP5O75197 1615 aa31.78■■■□□ 2.68
CHD4-214ENST00000545942 BCL11BQ9C0K0 894 aaPredicted RBP31.77■■■□□ 2.68
CHD4-214ENST00000545942 IP6K1Q92551 441 aa31.76■■■□□ 2.68
CHD4-214ENST00000545942 TNS2Q63HR2 1409 aa31.76■■■□□ 2.68
CHD4-214ENST00000545942 RREB1Q92766 1687 aa31.76■■■□□ 2.67
CHD4-214ENST00000545942 PLSCR1O15162 318 aa31.75■■■□□ 2.67
CHD4-214ENST00000545942 IL2RBP14784 551 aa31.74■■■□□ 2.67
CHD4-214ENST00000545942 NBPF14Q5TI25 921 aa31.74■■■□□ 2.67
CHD4-214ENST00000545942 NUP188Q5SRE5 1749 aa31.71■■■□□ 2.67
CHD4-214ENST00000545942 MAP3K19Q56UN5 1328 aa31.71■■■□□ 2.67
CHD4-214ENST00000545942 SBF2Q86WG5 1849 aa31.71■■■□□ 2.67
CHD4-214ENST00000545942 FYB1O15117 783 aa31.71■■■□□ 2.67
CHD4-214ENST00000545942 PTF1AQ7RTS3 328 aa31.71■■■□□ 2.67
CHD4-214ENST00000545942 FBLN1P23142 703 aa31.68■■■□□ 2.66
CHD4-214ENST00000545942 HOXC9P31274 260 aa31.68■■■□□ 2.66
CHD4-214ENST00000545942 AMPHP49418 695 aa31.68■■■□□ 2.66
CHD4-214ENST00000545942 LTV1Q96GA3 475 aaPredicted RBP31.68■■■□□ 2.66
CHD4-214ENST00000545942 GGNBP2Q9H3C7 697 aa31.68■■■□□ 2.66
CHD4-214ENST00000545942 RGPD3A6NKT7 1758 aaPredicted RBP31.66■■■□□ 2.66
CHD4-214ENST00000545942 RGPD4Q7Z3J3 1758 aa31.66■■■□□ 2.66
CHD4-214ENST00000545942 RTL1A6NKG5 1358 aa31.63■■■□□ 2.65
CHD4-214ENST00000545942 CCER1Q8TC90 406 aaPredicted RBP31.63■■■□□ 2.65
CHD4-214ENST00000545942 FAM208AQ9UK61 1670 aaKnown RBP31.62■■■□□ 2.65
CHD4-214ENST00000545942 RRS1Q15050 365 aaKnown RBP31.61■■■□□ 2.65
CHD4-214ENST00000545942 KCNQ2O43526 872 aa31.59■■■□□ 2.65
CHD4-214ENST00000545942 PROM2Q8N271 834 aa31.58■■■□□ 2.65
CHD4-214ENST00000545942 CARD14Q9BXL6 1004 aa31.58■■■□□ 2.65
CHD4-214ENST00000545942 MYOM1P52179 1685 aa31.58■■■□□ 2.65
CHD4-214ENST00000545942 ACSBG1Q96GR2 724 aa31.57■■■□□ 2.64
CHD4-214ENST00000545942 NSD3Q9BZ95 1437 aa31.56■■■□□ 2.64
CHD4-214ENST00000545942 TXNRD1Q16881 649 aa31.54■■■□□ 2.64
CHD4-214ENST00000545942 NHSQ6T4R5 1651 aa31.54■■■□□ 2.64
CHD4-214ENST00000545942 KIF20BQ96Q89 1820 aa31.54■■■□□ 2.64
CHD4-214ENST00000545942 ANO8Q9HCE9 1232 aaPredicted RBP31.53■■■□□ 2.64
CHD4-214ENST00000545942 EIF4G2P78344 907 aaKnown RBP eCLIP31.52■■■□□ 2.64
CHD4-214ENST00000545942 DDX54Q8TDD1 881 aaKnown RBP31.52■■■□□ 2.64
CHD4-214ENST00000545942 SMG6Q86US8 1419 aaKnown RBP31.52■■■□□ 2.64
CHD4-214ENST00000545942 KIF24Q5T7B8 1368 aa31.51■■■□□ 2.63
CHD4-214ENST00000545942 FLT4P35916 1363 aa31.5■■■□□ 2.63
CHD4-214ENST00000545942 INSRP06213 1382 aa31.49■■■□□ 2.63
CHD4-214ENST00000545942 NBPF6Q5VWK0 638 aa31.49■■■□□ 2.63
CHD4-214ENST00000545942 NBPF4Q96M43 638 aa31.49■■■□□ 2.63
CHD4-214ENST00000545942 POLR3GLQ9BT43 218 aa31.49■■■□□ 2.63
CHD4-214ENST00000545942 HSP90AB2PQ58FF8 381 aa31.48■■■□□ 2.63
CHD4-214ENST00000545942 SPON1Q9HCB6 807 aa31.48■■■□□ 2.63
CHD4-214ENST00000545942 HSPA5P11021 654 aaKnown RBP31.47■■■□□ 2.63
CHD4-214ENST00000545942 MEGF6O75095 1541 aa31.46■■■□□ 2.63
CHD4-214ENST00000545942 CGNL1Q0VF96 1302 aa31.46■■■□□ 2.63
CHD4-214ENST00000545942 ZCRB1Q8TBF4 217 aaKnown RBP31.46■■■□□ 2.63
CHD4-214ENST00000545942 STK32BQ9NY57 414 aa31.45■■■□□ 2.62
CHD4-214ENST00000545942 USHBP1Q8N6Y0 703 aa31.44■■■□□ 2.62
CHD4-214ENST00000545942 RGPD2P0DJD1 1756 aa31.44■■■□□ 2.62
CHD4-214ENST00000545942 RAPGEF4Q8WZA2 1011 aa31.43■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms