RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 USP47Q96K76 1375 aa7.77□□□□□ -1.17
CLSTN3-215ENST00000544584 TRIM37O94972 964 aa7.77□□□□□ -1.17
CLSTN3-215ENST00000544584 EIF4G2P78344 907 aaKnown RBP eCLIP7.77□□□□□ -1.17
CLSTN3-215ENST00000544584 FAM196AQ6ZSG2 479 aa7.77□□□□□ -1.17
CLSTN3-215ENST00000544584 CDCA7Q9BWT1 371 aaPredicted RBP7.77□□□□□ -1.17
CLSTN3-215ENST00000544584 STRN4Q9NRL3 753 aa7.77□□□□□ -1.17
CLSTN3-215ENST00000544584 USP19O94966 1318 aa7.77□□□□□ -1.17
CLSTN3-215ENST00000544584 KIAA0232Q92628 1395 aa7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 ZBTB7CA1YPR0 619 aa7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 APBA3O96018 575 aa7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 CSB-PGBD3P0DP91 1061 aa7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 PTGER2P43116 358 aa7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 PDE3BQ13370 1112 aa7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 COG3Q96JB2 828 aa7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 SYT17Q9BSW7 474 aa7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 GOLGB1Q14789 3259 aaKnown RBP7.76□□□□□ -1.17
CLSTN3-215ENST00000544584 TCP11L2Q8N4U5 519 aa7.75□□□□□ -1.17
CLSTN3-215ENST00000544584 SLC12A5Q9H2X9 1139 aa7.75□□□□□ -1.17
CLSTN3-215ENST00000544584 ALS2Q96Q42 1657 aa7.75□□□□□ -1.17
CLSTN3-215ENST00000544584 EDC4Q6P2E9 1401 aaKnown RBP7.75□□□□□ -1.17
CLSTN3-215ENST00000544584 SPATA31A5Q5VU36 1347 aa7.75□□□□□ -1.17
CLSTN3-215ENST00000544584 SPATA31A7Q8IWB4 1347 aa7.75□□□□□ -1.17
CLSTN3-215ENST00000544584 TRPM3Q9HCF6 1732 aaPredicted RBP7.75□□□□□ -1.17
CLSTN3-215ENST00000544584 AATKQ6ZMQ8 1374 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 MAP3K5Q99683 1374 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 TOPAZ1Q8N9V7 1692 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 SBF2Q86WG5 1849 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 HSPA6P17066 643 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 CHRNA2Q15822 529 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 BARGINQ6ZT62 677 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 TOM1L2Q6ZVM7 507 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 TESK2Q96S53 571 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 FHDC1Q9C0D6 1143 aaPredicted RBP7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 CPSF1Q10570 1443 aaKnown RBP7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 CRYBG1Q9Y4K1 1723 aa7.74□□□□□ -1.17
CLSTN3-215ENST00000544584 HMGB2P26583 209 aaKnown RBP7.73□□□□□ -1.17
CLSTN3-215ENST00000544584 PCDH10Q9P2E7 1040 aa7.73□□□□□ -1.17
CLSTN3-215ENST00000544584 USP35Q9P2H5 1018 aa7.73□□□□□ -1.17
CLSTN3-215ENST00000544584 SPATA31A1Q5TZJ5 1347 aa7.73□□□□□ -1.17
CLSTN3-215ENST00000544584 USP31Q70CQ4 1352 aa7.72□□□□□ -1.17
CLSTN3-215ENST00000544584 ANKRD36BQ8N2N9 1353 aa7.72□□□□□ -1.17
CLSTN3-215ENST00000544584 SOX12O15370 315 aa7.72□□□□□ -1.17
CLSTN3-215ENST00000544584 AMPHP49418 695 aa7.72□□□□□ -1.17
CLSTN3-215ENST00000544584 ARHGEF25Q86VW2 580 aa7.72□□□□□ -1.17
CLSTN3-215ENST00000544584 SSH2Q76I76 1423 aa7.71□□□□□ -1.17
CLSTN3-215ENST00000544584 PRELPP51888 382 aa7.71□□□□□ -1.18
CLSTN3-215ENST00000544584 SGIP1Q9BQI5 828 aa7.71□□□□□ -1.18
CLSTN3-215ENST00000544584 POLR3GLQ9BT43 218 aa7.71□□□□□ -1.18
CLSTN3-215ENST00000544584 ANO8Q9HCE9 1232 aaPredicted RBP7.71□□□□□ -1.18
CLSTN3-215ENST00000544584 CGNL1Q0VF96 1302 aa7.71□□□□□ -1.18
CLSTN3-215ENST00000544584 WDR17Q8IZU2 1322 aa7.71□□□□□ -1.18
CLSTN3-215ENST00000544584 A0A1W2PP64 1363 aa7.71□□□□□ -1.18
CLSTN3-215ENST00000544584 CRB1P82279 1406 aa7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 PEAK1Q9H792 1746 aa7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 ABCC6O95255 1503 aa7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 EXOC5O00471 708 aa7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 DDB1Q16531 1140 aa7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 LARP1Q6PKG0 1096 aaKnown RBP7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 CARD10Q9BWT7 1032 aa7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 PDGFDQ9GZP0 370 aaPredicted RBP7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 NLRP2Q9NX02 1062 aa7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 CCDC7Q96M83 1385 aa7.7□□□□□ -1.18
CLSTN3-215ENST00000544584 SMG6Q86US8 1419 aaKnown RBP7.69□□□□□ -1.18
CLSTN3-215ENST00000544584 ZBTB7AO95365 584 aa7.69□□□□□ -1.18
CLSTN3-215ENST00000544584 NME9Q86XW9 330 aa7.69□□□□□ -1.18
CLSTN3-215ENST00000544584 COL24A1Q17RW2 1714 aa7.69□□□□□ -1.18
CLSTN3-215ENST00000544584 PARP4Q9UKK3 1724 aaKnown RBP7.69□□□□□ -1.18
CLSTN3-215ENST00000544584 SLIT3O75094 1523 aa7.68□□□□□ -1.18
CLSTN3-215ENST00000544584 IP6K1Q92551 441 aa7.68□□□□□ -1.18
CLSTN3-215ENST00000544584 KNSTRNQ9Y448 316 aa7.68□□□□□ -1.18
CLSTN3-215ENST00000544584 COL5A2P05997 1499 aaPredicted RBP7.68□□□□□ -1.18
CLSTN3-215ENST00000544584 PHRF1Q9P1Y6 1649 aaKnown RBP7.67□□□□□ -1.18
CLSTN3-215ENST00000544584 AKAP12Q02952 1782 aa7.67□□□□□ -1.18
CLSTN3-215ENST00000544584 PLSCR1O15162 318 aa7.67□□□□□ -1.18
CLSTN3-215ENST00000544584 HSPA5P11021 654 aaKnown RBP7.67□□□□□ -1.18
CLSTN3-215ENST00000544584 COL13A1Q5TAT6 717 aaPredicted RBP7.67□□□□□ -1.18
CLSTN3-215ENST00000544584 ANKRD24Q8TF21 1146 aa7.67□□□□□ -1.18
CLSTN3-215ENST00000544584 MTFR1LQ9H019 292 aa7.67□□□□□ -1.18
CLSTN3-215ENST00000544584 RTL1A6NKG5 1358 aa7.67□□□□□ -1.18
CLSTN3-215ENST00000544584 KIF24Q5T7B8 1368 aa7.67□□□□□ -1.18
CLSTN3-215ENST00000544584 FYB1O15117 783 aa7.66□□□□□ -1.18
CLSTN3-215ENST00000544584 CAPN15O75808 1086 aa7.66□□□□□ -1.18
CLSTN3-215ENST00000544584 IL2RBP14784 551 aa7.66□□□□□ -1.18
CLSTN3-215ENST00000544584 ATF5Q9Y2D1 282 aaPredicted RBP7.66□□□□□ -1.18
CLSTN3-215ENST00000544584 ERBB3P21860 1342 aa7.66□□□□□ -1.18
CLSTN3-215ENST00000544584 ATP10DQ9P241 1426 aa7.66□□□□□ -1.18
CLSTN3-215ENST00000544584 OVOS2A0A0G2JMS6 1433 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 OVOS2A0A0J9YW53 1432 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 PIK3C2AO00443 1686 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 NSD2O96028 1365 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 GPR162Q16538 588 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 OVOS2Q6IE36 1432 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 DNAJC5GQ8N7S2 189 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 RAPGEF4Q8WZA2 1011 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 GGNBP2Q9H3C7 697 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 CD163L1Q9NR16 1453 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 AXIN2Q9Y2T1 843 aa7.65□□□□□ -1.18
CLSTN3-215ENST00000544584 MON2Q7Z3U7 1717 aa7.64□□□□□ -1.19
CLSTN3-215ENST00000544584 WDR90Q96KV7 1748 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms