RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 SLC15A2Q16348 729 aa7.19□□□□□ -1.26
LIMS1-214ENST00000542845 BARGINQ6ZT62 677 aa7.19□□□□□ -1.26
LIMS1-214ENST00000542845 PPARGC1BQ86YN6 1023 aaKnown RBP7.19□□□□□ -1.26
LIMS1-214ENST00000542845 IFNLR1Q8IU57 520 aaPredicted RBP7.19□□□□□ -1.26
LIMS1-214ENST00000542845 PROM2Q8N271 834 aa7.19□□□□□ -1.26
LIMS1-214ENST00000542845 ZNF526Q8TF50 670 aaPredicted RBP7.19□□□□□ -1.26
LIMS1-214ENST00000542845 MTFR1LQ9H019 292 aa7.19□□□□□ -1.26
LIMS1-214ENST00000542845 ACIN1Q9UKV3 1341 aaKnown RBP7.19□□□□□ -1.26
LIMS1-214ENST00000542845 SBF2Q86WG5 1849 aa7.18□□□□□ -1.26
LIMS1-214ENST00000542845 MINK1Q8N4C8 1332 aaPredicted RBP7.18□□□□□ -1.26
LIMS1-214ENST00000542845 UTRNP46939 3433 aa7.18□□□□□ -1.26
LIMS1-214ENST00000542845 KNDC1Q76NI1 1749 aa7.18□□□□□ -1.26
LIMS1-214ENST00000542845 C19orf67A6NJJ6 358 aa7.17□□□□□ -1.26
LIMS1-214ENST00000542845 GABBR2O75899 941 aa7.17□□□□□ -1.26
LIMS1-214ENST00000542845 HSPA6P17066 643 aa7.17□□□□□ -1.26
LIMS1-214ENST00000542845 TXNRD1Q16881 649 aa7.17□□□□□ -1.26
LIMS1-214ENST00000542845 SSH2Q76I76 1423 aa7.17□□□□□ -1.26
LIMS1-214ENST00000542845 CRYBG1Q9Y4K1 1723 aa7.16□□□□□ -1.26
LIMS1-214ENST00000542845 C11orf95C9JLR9 678 aaPredicted RBP7.16□□□□□ -1.26
LIMS1-214ENST00000542845 PRKAR2AP13861 404 aaKnown RBP7.16□□□□□ -1.26
LIMS1-214ENST00000542845 DDB1Q16531 1140 aa7.16□□□□□ -1.26
LIMS1-214ENST00000542845 CFAP70Q5T0N1 1121 aa7.16□□□□□ -1.26
LIMS1-214ENST00000542845 GPBP1L1Q9HC44 474 aaPredicted RBP7.16□□□□□ -1.26
LIMS1-214ENST00000542845 DHX57Q6P158 1386 aaKnown RBP7.16□□□□□ -1.26
LIMS1-214ENST00000542845 OVOS2A0A0G2JMS6 1433 aa7.16□□□□□ -1.26
LIMS1-214ENST00000542845 OVOS2A0A0J9YW53 1432 aa7.16□□□□□ -1.26
LIMS1-214ENST00000542845 OVOS2Q6IE36 1432 aa7.16□□□□□ -1.26
LIMS1-214ENST00000542845 SIRT1Q96EB6 747 aa7.15□□□□□ -1.26
LIMS1-214ENST00000542845 SGIP1Q9BQI5 828 aa7.15□□□□□ -1.26
LIMS1-214ENST00000542845 TRAK1Q9UPV9 953 aa7.15□□□□□ -1.26
LIMS1-214ENST00000542845 THRAP3Q9Y2W1 955 aaKnown RBP7.15□□□□□ -1.26
LIMS1-214ENST00000542845 PHRF1Q9P1Y6 1649 aaKnown RBP7.15□□□□□ -1.27
LIMS1-214ENST00000542845 SHANK3Q9BYB0 1731 aa7.15□□□□□ -1.27
LIMS1-214ENST00000542845 RGPD3A6NKT7 1758 aaPredicted RBP7.14□□□□□ -1.27
LIMS1-214ENST00000542845 TOM1L2Q6ZVM7 507 aa7.14□□□□□ -1.27
LIMS1-214ENST00000542845 RGPD4Q7Z3J3 1758 aa7.14□□□□□ -1.27
LIMS1-214ENST00000542845 ANKARQ7Z5J8 1434 aa7.14□□□□□ -1.27
LIMS1-214ENST00000542845 ABTB2Q8N961 1025 aa7.14□□□□□ -1.27
LIMS1-214ENST00000542845 PRR36Q9H6K5 1346 aa7.14□□□□□ -1.27
LIMS1-214ENST00000542845 PARP4Q9UKK3 1724 aaKnown RBP7.13□□□□□ -1.27
LIMS1-214ENST00000542845 ANKRD30BQ9BXX2 1392 aa7.13□□□□□ -1.27
LIMS1-214ENST00000542845 POLD1P28340 1107 aa7.13□□□□□ -1.27
LIMS1-214ENST00000542845 MARCH10Q8NA82 808 aaPredicted RBP7.13□□□□□ -1.27
LIMS1-214ENST00000542845 NLGN2Q8NFZ4 835 aa7.13□□□□□ -1.27
LIMS1-214ENST00000542845 ACSBG1Q96GR2 724 aa7.13□□□□□ -1.27
LIMS1-214ENST00000542845 C14orf93Q9H972 538 aaKnown RBP7.13□□□□□ -1.27
LIMS1-214ENST00000542845 CEP350Q5VT06 3117 aa7.12□□□□□ -1.27
LIMS1-214ENST00000542845 ATP10DQ9P241 1426 aa7.12□□□□□ -1.27
LIMS1-214ENST00000542845 KAT6BQ8WYB5 2073 aa7.12□□□□□ -1.27
LIMS1-214ENST00000542845 WASLO00401 505 aaPredicted RBP7.12□□□□□ -1.27
LIMS1-214ENST00000542845 GRIN3BO60391 1043 aa7.12□□□□□ -1.27
LIMS1-214ENST00000542845 YBX3P16989 372 aaKnown RBP eCLIP7.12□□□□□ -1.277e-7■□□□□ 9
LIMS1-214ENST00000542845 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.12□□□□□ -1.27
LIMS1-214ENST00000542845 AKAP12Q02952 1782 aa7.12□□□□□ -1.27
LIMS1-214ENST00000542845 PEAK1Q9H792 1746 aa7.12□□□□□ -1.27
LIMS1-214ENST00000542845 ECM2O94769 699 aaPredicted RBP7.11□□□□□ -1.27
LIMS1-214ENST00000542845 COL13A1Q5TAT6 717 aaPredicted RBP7.11□□□□□ -1.27
LIMS1-214ENST00000542845 SPOCK2Q92563 424 aa7.11□□□□□ -1.27
LIMS1-214ENST00000542845 NUDT16Q96DE0 195 aaKnown RBP7.11□□□□□ -1.27
LIMS1-214ENST00000542845 PIK3C2GO75747 1445 aa7.1□□□□□ -1.27
LIMS1-214ENST00000542845 CRB1P82279 1406 aa7.1□□□□□ -1.27
LIMS1-214ENST00000542845 EXOC5O00471 708 aa7.1□□□□□ -1.27
LIMS1-214ENST00000542845 GCP02774 474 aa7.1□□□□□ -1.27
LIMS1-214ENST00000542845 TNS4Q8IZW8 715 aa7.1□□□□□ -1.27
LIMS1-214ENST00000542845 WWC3Q9ULE0 1092 aa7.1□□□□□ -1.27
LIMS1-214ENST00000542845 ATP7BP35670 1465 aa7.1□□□□□ -1.27
LIMS1-214ENST00000542845 EIF3AQ14152 1382 aaKnown RBP7.09□□□□□ -1.27
LIMS1-214ENST00000542845 MAP3K5Q99683 1374 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 LRRC37A3O60309 1634 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 ACEP12821 1306 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 CSB-PGBD3P0DP91 1061 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 ZNF827Q17R98 1081 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 NLRP13Q86W25 1043 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 PLCD3Q8N3E9 789 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 TULP4Q9NRJ4 1543 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 TOPAZ1Q8N9V7 1692 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 LMO7Q8WWI1 1683 aa7.09□□□□□ -1.27
LIMS1-214ENST00000542845 ITSN1Q15811 1721 aa7.08□□□□□ -1.28
LIMS1-214ENST00000542845 SOX12O15370 315 aa7.08□□□□□ -1.28
LIMS1-214ENST00000542845 APLP1P51693 650 aa7.08□□□□□ -1.28
LIMS1-214ENST00000542845 TFCP2L1Q9NZI6 479 aa7.08□□□□□ -1.28
LIMS1-214ENST00000542845 KDM2AQ9Y2K7 1162 aa7.08□□□□□ -1.28
LIMS1-214ENST00000542845 COL5A2P05997 1499 aaPredicted RBP7.08□□□□□ -1.28
LIMS1-214ENST00000542845 KCNQ4P56696 695 aa7.07□□□□□ -1.28
LIMS1-214ENST00000542845 NLRP6P59044 892 aa7.07□□□□□ -1.28
LIMS1-214ENST00000542845 CDK19Q9BWU1 502 aa7.07□□□□□ -1.28
LIMS1-214ENST00000542845 LRRC4BQ9NT99 713 aa7.07□□□□□ -1.28
LIMS1-214ENST00000542845 CLEC11AQ9Y240 323 aa7.07□□□□□ -1.28
LIMS1-214ENST00000542845 SPATA31E1Q6ZUB1 1445 aa7.07□□□□□ -1.28
LIMS1-214ENST00000542845 CPDO75976 1380 aa7.07□□□□□ -1.28
LIMS1-214ENST00000542845 RGPD5Q99666 1765 aa7.06□□□□□ -1.28
LIMS1-214ENST00000542845 PRELPP51888 382 aa7.06□□□□□ -1.28
LIMS1-214ENST00000542845 HTRA3P83110 453 aa7.06□□□□□ -1.28
LIMS1-214ENST00000542845 MSL1Q68DK7 614 aa7.06□□□□□ -1.28
LIMS1-214ENST00000542845 DNAJC5GQ8N7S2 189 aa7.06□□□□□ -1.28
LIMS1-214ENST00000542845 SLC16A10Q8TF71 515 aa7.06□□□□□ -1.28
LIMS1-214ENST00000542845 CFAP44Q96MT7 982 aa7.06□□□□□ -1.28
LIMS1-214ENST00000542845 ZNF692Q9BU19 519 aaPredicted RBP7.06□□□□□ -1.28
LIMS1-214ENST00000542845 AXIN2Q9Y2T1 843 aa7.06□□□□□ -1.28
LIMS1-214ENST00000542845 SPDYE2BA6NHP3 402 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms