RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 SOS2Q07890 1332 aaPredicted RBP9.73□□□□□ -0.85
VPS53-205ENST00000541903 MED1Q15648 1581 aaPredicted RBP9.72□□□□□ -0.85
VPS53-205ENST00000541903 PRKAR2BP31323 418 aa9.72□□□□□ -0.85
VPS53-205ENST00000541903 TCP11L2Q8N4U5 519 aa9.72□□□□□ -0.85
VPS53-205ENST00000541903 HMOX1P09601 288 aa9.71□□□□□ -0.86
VPS53-205ENST00000541903 IP6K1Q92551 441 aa9.71□□□□□ -0.86
VPS53-205ENST00000541903 PLEKHF1Q96S99 279 aa9.71□□□□□ -0.86
VPS53-205ENST00000541903 RSPH6AQ9H0K4 717 aa9.71□□□□□ -0.86
VPS53-205ENST00000541903 NHSL1Q5SYE7 1610 aa9.71□□□□□ -0.86
VPS53-205ENST00000541903 NCBP3Q53F19 620 aaKnown RBP9.7□□□□□ -0.86
VPS53-205ENST00000541903 ARHGEF25Q86VW2 580 aa9.7□□□□□ -0.86
VPS53-205ENST00000541903 RRP7AQ9Y3A4 280 aaKnown RBP9.7□□□□□ -0.86
VPS53-205ENST00000541903 ZNF521Q96K83 1311 aa9.7□□□□□ -0.86
VPS53-205ENST00000541903 TOM1O60784 492 aa9.69□□□□□ -0.86
VPS53-205ENST00000541903 HAP1P54257 671 aaPredicted RBP9.69□□□□□ -0.86
VPS53-205ENST00000541903 GOLGA2Q08379 1002 aa9.69□□□□□ -0.86
VPS53-205ENST00000541903 NEUROD2Q15784 382 aa9.69□□□□□ -0.86
VPS53-205ENST00000541903 CCDC27Q2M243 656 aa9.69□□□□□ -0.86
VPS53-205ENST00000541903 AHDC1Q5TGY3 1603 aaPredicted RBP9.69□□□□□ -0.86
VPS53-205ENST00000541903 SULT6B1Q6IMI4 303 aa9.69□□□□□ -0.86
VPS53-205ENST00000541903 IGSF1Q8N6C5 1336 aa9.69□□□□□ -0.86
VPS53-205ENST00000541903 LTV1Q96GA3 475 aaPredicted RBP9.69□□□□□ -0.86
VPS53-205ENST00000541903 PHRF1Q9P1Y6 1649 aaKnown RBP9.69□□□□□ -0.86
VPS53-205ENST00000541903 ROBO1Q9Y6N7 1651 aa9.69□□□□□ -0.86
VPS53-205ENST00000541903 LTN1O94822 1766 aa9.68□□□□□ -0.86
VPS53-205ENST00000541903 TMPOP42166 694 aaKnown RBP9.68□□□□□ -0.86
VPS53-205ENST00000541903 ZC3H6P61129 1189 aaKnown RBP9.68□□□□□ -0.86
VPS53-205ENST00000541903 AEBP1Q8IUX7 1158 aa9.68□□□□□ -0.86
VPS53-205ENST00000541903 WWC1Q8IX03 1113 aa9.68□□□□□ -0.86
VPS53-205ENST00000541903 RGPD1P0DJD0 1748 aa9.68□□□□□ -0.86
VPS53-205ENST00000541903 ABCC6O95255 1503 aa9.67□□□□□ -0.86
VPS53-205ENST00000541903 CPDO75976 1380 aa9.67□□□□□ -0.86
VPS53-205ENST00000541903 E9PSI1 815 aa9.67□□□□□ -0.86
VPS53-205ENST00000541903 LMOD3Q0VAK6 560 aa9.67□□□□□ -0.86
VPS53-205ENST00000541903 NFE2L2Q16236 605 aa9.67□□□□□ -0.86
VPS53-205ENST00000541903 CABLES1Q8TDN4 633 aa9.67□□□□□ -0.86
VPS53-205ENST00000541903 CDCA7LQ96GN5 454 aa9.67□□□□□ -0.86
VPS53-205ENST00000541903 EYA1Q99502 592 aa9.67□□□□□ -0.86
VPS53-205ENST00000541903 PHF23Q9BUL5 403 aaPredicted RBP9.67□□□□□ -0.86
VPS53-205ENST00000541903 KDRP35968 1356 aa9.66□□□□□ -0.86
VPS53-205ENST00000541903 NEFLP07196 543 aa9.66□□□□□ -0.86
VPS53-205ENST00000541903 RIPK4P57078 832 aa9.66□□□□□ -0.86
VPS53-205ENST00000541903 WDR63Q8IWG1 891 aa9.66□□□□□ -0.86
VPS53-205ENST00000541903 LRRC59Q96AG4 307 aaKnown RBP9.66□□□□□ -0.86
VPS53-205ENST00000541903 CRYBG1Q9Y4K1 1723 aa9.65□□□□□ -0.86
VPS53-205ENST00000541903 KIAA0232Q92628 1395 aa9.65□□□□□ -0.86
VPS53-205ENST00000541903 UBAP1LF5GYI3 381 aa9.65□□□□□ -0.86
VPS53-205ENST00000541903 PIP4K2BP78356 416 aa9.65□□□□□ -0.86
VPS53-205ENST00000541903 SLFN5Q08AF3 891 aa9.65□□□□□ -0.86
VPS53-205ENST00000541903 ANKRD24Q8TF21 1146 aa9.65□□□□□ -0.86
VPS53-205ENST00000541903 PHACTR3Q96KR7 559 aa9.65□□□□□ -0.86
VPS53-205ENST00000541903 PRDM11Q9NQV5 511 aa9.65□□□□□ -0.86
VPS53-205ENST00000541903 GTF3C3Q9Y5Q9 886 aa9.65□□□□□ -0.86
VPS53-205ENST00000541903 ERBB3P21860 1342 aa9.64□□□□□ -0.87
VPS53-205ENST00000541903 CSB-PGBD3P0DP91 1061 aa9.64□□□□□ -0.87
VPS53-205ENST00000541903 CALD1Q05682 793 aaKnown RBP9.64□□□□□ -0.87
VPS53-205ENST00000541903 MYH16Q9H6N6 1097 aa9.64□□□□□ -0.87
VPS53-205ENST00000541903 IL16Q14005 1332 aa9.63□□□□□ -0.87
VPS53-205ENST00000541903 CHRNA2Q15822 529 aa9.63□□□□□ -0.87
VPS53-205ENST00000541903 NBPF6Q5VWK0 638 aa9.63□□□□□ -0.87
VPS53-205ENST00000541903 DUSP27Q5VZP5 1158 aa9.63□□□□□ -0.87
VPS53-205ENST00000541903 GAS2L2Q8NHY3 880 aa9.63□□□□□ -0.87
VPS53-205ENST00000541903 CERKQ8TCT0 537 aa9.63□□□□□ -0.87
VPS53-205ENST00000541903 NBPF4Q96M43 638 aa9.63□□□□□ -0.87
VPS53-205ENST00000541903 TRIM35Q9UPQ4 493 aa9.63□□□□□ -0.87
VPS53-205ENST00000541903 SUPT16HQ9Y5B9 1047 aaKnown RBP9.63□□□□□ -0.87
VPS53-205ENST00000541903 ABCA3Q99758 1704 aa9.62□□□□□ -0.87
VPS53-205ENST00000541903 USHBP1Q8N6Y0 703 aa9.62□□□□□ -0.87
VPS53-205ENST00000541903 RCAN3Q9UKA8 241 aa9.62□□□□□ -0.87
VPS53-205ENST00000541903 AXIN2Q9Y2T1 843 aa9.62□□□□□ -0.87
VPS53-205ENST00000541903 COL16A1Q07092 1604 aaPredicted RBP9.62□□□□□ -0.87
VPS53-205ENST00000541903 NCAPD2Q15021 1401 aa9.62□□□□□ -0.87
VPS53-205ENST00000541903 PHLPP1O60346 1717 aa9.62□□□□□ -0.87
VPS53-205ENST00000541903 COL22A1Q8NFW1 1626 aaPredicted RBP9.61□□□□□ -0.87
VPS53-205ENST00000541903 TRMT2AQ8IZ69 625 aaKnown RBP9.61□□□□□ -0.87
VPS53-205ENST00000541903 SPINK5Q9NQ38 1064 aaPredicted RBP9.61□□□□□ -0.87
VPS53-205ENST00000541903 NLRP2Q9NX02 1062 aa9.61□□□□□ -0.87
VPS53-205ENST00000541903 MTHFSDQ2M296 383 aaKnown RBP9.6□□□□□ -0.87
VPS53-205ENST00000541903 RTF1Q92541 710 aaKnown RBP9.6□□□□□ -0.87
VPS53-205ENST00000541903 FAM208AQ9UK61 1670 aaKnown RBP9.6□□□□□ -0.87
VPS53-205ENST00000541903 CAMTA1Q9Y6Y1 1673 aa9.6□□□□□ -0.87
VPS53-205ENST00000541903 COL18A1P39060 1754 aa9.6□□□□□ -0.87
VPS53-205ENST00000541903 FANCIQ9NVI1 1328 aa9.59□□□□□ -0.87
VPS53-205ENST00000541903 LMO7Q8WWI1 1683 aa9.59□□□□□ -0.87
VPS53-205ENST00000541903 AMOTQ4VCS5 1084 aa9.59□□□□□ -0.87
VPS53-205ENST00000541903 PLEKHO1Q53GL0 409 aaPredicted RBP9.59□□□□□ -0.87
VPS53-205ENST00000541903 RAPGEF4Q8WZA2 1011 aa9.59□□□□□ -0.87
VPS53-205ENST00000541903 IFT57Q9NWB7 429 aa9.59□□□□□ -0.87
VPS53-205ENST00000541903 MAP3K5Q99683 1374 aa9.59□□□□□ -0.87
VPS53-205ENST00000541903 COL5A2P05997 1499 aaPredicted RBP9.59□□□□□ -0.87
VPS53-205ENST00000541903 WDR17Q8IZU2 1322 aa9.58□□□□□ -0.88
VPS53-205ENST00000541903 HTATSF1O43719 755 aaKnown RBP9.58□□□□□ -0.88
VPS53-205ENST00000541903 GNAI1P63096 354 aa9.58□□□□□ -0.88
VPS53-205ENST00000541903 THUMPD2Q9BTF0 503 aaKnown RBP9.58□□□□□ -0.88
VPS53-205ENST00000541903 PLEKHG2Q9H7P9 1386 aa9.58□□□□□ -0.88
VPS53-205ENST00000541903 FAM83GA6ND36 823 aa9.57□□□□□ -0.88
VPS53-205ENST00000541903 GNAT3A8MTJ3 354 aa9.57□□□□□ -0.88
VPS53-205ENST00000541903 TATP17735 454 aaPredicted RBP9.57□□□□□ -0.88
VPS53-205ENST00000541903 RRP1P56182 461 aaKnown RBP9.57□□□□□ -0.88
VPS53-205ENST00000541903 EVA1CP58658 441 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms