RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 PLSCR1O15162 318 aa12.46□□□□□ -0.41
CLSTN3-212ENST00000541770 NLRP6P59044 892 aa12.46□□□□□ -0.41
CLSTN3-212ENST00000541770 PTF1AQ7RTS3 328 aa12.46□□□□□ -0.41
CLSTN3-212ENST00000541770 CABP2Q9NPB3 220 aa12.46□□□□□ -0.41
CLSTN3-212ENST00000541770 KIAA1210Q9ULL0 1709 aa12.45□□□□□ -0.42
CLSTN3-212ENST00000541770 NEUROD1Q13562 356 aa12.45□□□□□ -0.42
CLSTN3-212ENST00000541770 QRICH2Q9H0J4 1663 aa12.45□□□□□ -0.42
CLSTN3-212ENST00000541770 SOX12O15370 315 aa12.44□□□□□ -0.42
CLSTN3-212ENST00000541770 CSB-PGBD3P0DP91 1061 aa12.44□□□□□ -0.42
CLSTN3-212ENST00000541770 STK32BQ9NY57 414 aa12.44□□□□□ -0.42
CLSTN3-212ENST00000541770 CHD4Q14839 1912 aa12.44□□□□□ -0.42
CLSTN3-212ENST00000541770 ZNF784Q8NCA9 323 aaPredicted RBP12.43□□□□□ -0.42
CLSTN3-212ENST00000541770 CCER1Q8TC90 406 aaPredicted RBP12.43□□□□□ -0.42
CLSTN3-212ENST00000541770 COL18A1P39060 1754 aa12.43□□□□□ -0.42
CLSTN3-212ENST00000541770 AATKQ6ZMQ8 1374 aa12.43□□□□□ -0.42
CLSTN3-212ENST00000541770 SENP3-EIF4A1A0A087X0R7 540 aa12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 TXNRD1Q16881 649 aa12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 NBPF1Q3BBV0 1214 aa12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 PROM2Q8N271 834 aa12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 MARCH10Q8NA82 808 aaPredicted RBP12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 L3MBTL2Q969R5 705 aa12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 FHDC1Q9C0D6 1143 aaPredicted RBP12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 CABP1Q9NZU7 370 aa12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 SLIT3O75094 1523 aa12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 PIK3C2AO00443 1686 aa12.42□□□□□ -0.42
CLSTN3-212ENST00000541770 WDR17Q8IZU2 1322 aa12.41□□□□□ -0.42
CLSTN3-212ENST00000541770 CENPJQ9HC77 1338 aaPredicted RBP12.41□□□□□ -0.42
CLSTN3-212ENST00000541770 USP6P35125 1406 aa12.41□□□□□ -0.42
CLSTN3-212ENST00000541770 TONSLQ96HA7 1378 aa12.41□□□□□ -0.42
CLSTN3-212ENST00000541770 PTGER2P43116 358 aa12.4□□□□□ -0.42
CLSTN3-212ENST00000541770 SLC15A2Q16348 729 aa12.4□□□□□ -0.42
CLSTN3-212ENST00000541770 SYT17Q9BSW7 474 aa12.4□□□□□ -0.42
CLSTN3-212ENST00000541770 TIMELESSQ9UNS1 1208 aa12.4□□□□□ -0.42
CLSTN3-212ENST00000541770 AXIN2Q9Y2T1 843 aa12.4□□□□□ -0.42
CLSTN3-212ENST00000541770 EXOC5O00471 708 aa12.39□□□□□ -0.43
CLSTN3-212ENST00000541770 CDCA7Q9BWT1 371 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-212ENST00000541770 BRD4O60885 1362 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-212ENST00000541770 KAT6BQ8WYB5 2073 aa12.39□□□□□ -0.43
CLSTN3-212ENST00000541770 CPSF1Q10570 1443 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-212ENST00000541770 KLHL34Q8N239 644 aa12.38□□□□□ -0.43
CLSTN3-212ENST00000541770 ACSBG1Q96GR2 724 aa12.38□□□□□ -0.43
CLSTN3-212ENST00000541770 MTFR1LQ9H019 292 aa12.38□□□□□ -0.43
CLSTN3-212ENST00000541770 NHSQ6T4R5 1651 aa12.37□□□□□ -0.43
CLSTN3-212ENST00000541770 KCNH5Q8NCM2 988 aa12.36□□□□□ -0.43
CLSTN3-212ENST00000541770 ARXQ96QS3 562 aa12.36□□□□□ -0.43
CLSTN3-212ENST00000541770 CARD10Q9BWT7 1032 aa12.36□□□□□ -0.43
CLSTN3-212ENST00000541770 C1QTNF8P60827 252 aa12.35□□□□□ -0.43
CLSTN3-212ENST00000541770 GPR162Q16538 588 aa12.35□□□□□ -0.43
CLSTN3-212ENST00000541770 ARHGEF25Q86VW2 580 aa12.35□□□□□ -0.43
CLSTN3-212ENST00000541770 PELP1Q8IZL8 1130 aaKnown RBP12.35□□□□□ -0.43
CLSTN3-212ENST00000541770 BCL9O00512 1426 aa12.35□□□□□ -0.43
CLSTN3-212ENST00000541770 TTC21BQ7Z4L5 1316 aa12.35□□□□□ -0.43
CLSTN3-212ENST00000541770 BTAF1O14981 1849 aa12.34□□□□□ -0.43
CLSTN3-212ENST00000541770 TRPM1Q7Z4N2 1603 aa12.34□□□□□ -0.43
CLSTN3-212ENST00000541770 TNS2Q63HR2 1409 aa12.34□□□□□ -0.43
CLSTN3-212ENST00000541770 EVC2Q86UK5 1308 aa12.34□□□□□ -0.43
CLSTN3-212ENST00000541770 LTN1O94822 1766 aa12.33□□□□□ -0.44
CLSTN3-212ENST00000541770 CCDC7Q96M83 1385 aa12.33□□□□□ -0.44
CLSTN3-212ENST00000541770 IFFO2Q5TF58 517 aa12.32□□□□□ -0.44
CLSTN3-212ENST00000541770 SGIP1Q9BQI5 828 aa12.32□□□□□ -0.44
CLSTN3-212ENST00000541770 ZNF692Q9BU19 519 aaPredicted RBP12.32□□□□□ -0.44
CLSTN3-212ENST00000541770 NLRP2Q9NX02 1062 aa12.32□□□□□ -0.44
CLSTN3-212ENST00000541770 PAPPAQ13219 1627 aa12.31□□□□□ -0.44
CLSTN3-212ENST00000541770 NFAT5O94916 1531 aa12.31□□□□□ -0.44
CLSTN3-212ENST00000541770 ZNF827Q17R98 1081 aa12.3□□□□□ -0.44
CLSTN3-212ENST00000541770 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.3□□□□□ -0.44
CLSTN3-212ENST00000541770 ABCC6O95255 1503 aa12.3□□□□□ -0.44
CLSTN3-212ENST00000541770 TTC21AQ8NDW8 1320 aa12.3□□□□□ -0.44
CLSTN3-212ENST00000541770 KTN1Q86UP2 1357 aaKnown RBP12.3□□□□□ -0.44
CLSTN3-212ENST00000541770 MON2Q7Z3U7 1717 aa12.29□□□□□ -0.44
CLSTN3-212ENST00000541770 GIGYF1O75420 1035 aaPredicted RBP12.29□□□□□ -0.44
CLSTN3-212ENST00000541770 IL2RBP14784 551 aa12.28□□□□□ -0.44
CLSTN3-212ENST00000541770 POLD1P28340 1107 aa12.28□□□□□ -0.44
CLSTN3-212ENST00000541770 ROCK2O75116 1388 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-212ENST00000541770 QSER1Q2KHR3 1735 aa12.28□□□□□ -0.44
CLSTN3-212ENST00000541770 TUBGCP6Q96RT7 1819 aa12.27□□□□□ -0.44
CLSTN3-212ENST00000541770 LRRC4BQ9NT99 713 aa12.27□□□□□ -0.45
CLSTN3-212ENST00000541770 DDX54Q8TDD1 881 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-212ENST00000541770 ANKRD24Q8TF21 1146 aa12.26□□□□□ -0.45
CLSTN3-212ENST00000541770 SYTL4Q96C24 671 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-212ENST00000541770 ERBB3P21860 1342 aa12.26□□□□□ -0.45
CLSTN3-212ENST00000541770 MAP3K5Q99683 1374 aa12.26□□□□□ -0.45
CLSTN3-212ENST00000541770 MSH5O43196 834 aa12.25□□□□□ -0.45
CLSTN3-212ENST00000541770 KCNQ4P56696 695 aa12.25□□□□□ -0.45
CLSTN3-212ENST00000541770 NME9Q86XW9 330 aa12.25□□□□□ -0.45
CLSTN3-212ENST00000541770 TFCP2L1Q9NZI6 479 aa12.25□□□□□ -0.45
CLSTN3-212ENST00000541770 DOT1LQ8TEK3 1739 aa12.25□□□□□ -0.45
CLSTN3-212ENST00000541770 NLGN2Q8NFZ4 835 aa12.24□□□□□ -0.45
CLSTN3-212ENST00000541770 TMC1Q8TDI8 760 aa12.24□□□□□ -0.45
CLSTN3-212ENST00000541770 SLC16A10Q8TF71 515 aa12.24□□□□□ -0.45
CLSTN3-212ENST00000541770 LTV1Q96GA3 475 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-212ENST00000541770 SHANK3Q9BYB0 1731 aa12.23□□□□□ -0.45
CLSTN3-212ENST00000541770 AKT1S1Q96B36 256 aa12.23□□□□□ -0.45
CLSTN3-212ENST00000541770 CARD11Q9BXL7 1154 aa12.23□□□□□ -0.45
CLSTN3-212ENST00000541770 COL24A1Q17RW2 1714 aa12.23□□□□□ -0.45
CLSTN3-212ENST00000541770 USP54Q70EL1 1684 aa12.22□□□□□ -0.45
CLSTN3-212ENST00000541770 PNPLA7Q6ZV29 1317 aa12.22□□□□□ -0.45
CLSTN3-212ENST00000541770 SLC27A3Q5K4L6 730 aa12.22□□□□□ -0.45
CLSTN3-212ENST00000541770 RGPD2P0DJD1 1756 aa12.22□□□□□ -0.45
CLSTN3-212ENST00000541770 LY75O60449 1722 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms