RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 NME9Q86XW9 330 aa16.76■□□□□ 0.27
CLSTN3-211ENST00000541667 MON2Q7Z3U7 1717 aa16.76■□□□□ 0.27
CLSTN3-211ENST00000541667 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.75■□□□□ 0.27
CLSTN3-211ENST00000541667 PSDA5PKW4 1024 aaPredicted RBP16.74■□□□□ 0.27
CLSTN3-211ENST00000541667 SOX12O15370 315 aa16.74■□□□□ 0.27
CLSTN3-211ENST00000541667 TOM1L2Q6ZVM7 507 aa16.74■□□□□ 0.27
CLSTN3-211ENST00000541667 TMC1Q8TDI8 760 aa16.74■□□□□ 0.27
CLSTN3-211ENST00000541667 PARP4Q9UKK3 1724 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-211ENST00000541667 APBA3O96018 575 aa16.73■□□□□ 0.27
CLSTN3-211ENST00000541667 CARD10Q9BWT7 1032 aa16.73■□□□□ 0.27
CLSTN3-211ENST00000541667 RGPD5Q99666 1765 aa16.73■□□□□ 0.27
CLSTN3-211ENST00000541667 A0A1W2PP64 1363 aa16.72■□□□□ 0.27
CLSTN3-211ENST00000541667 PEAK1Q9H792 1746 aa16.71■□□□□ 0.27
CLSTN3-211ENST00000541667 PTF1AQ7RTS3 328 aa16.71■□□□□ 0.27
CLSTN3-211ENST00000541667 USP54Q70EL1 1684 aa16.71■□□□□ 0.27
CLSTN3-211ENST00000541667 HDGFL2Q7Z4V5 671 aaPredicted RBP16.7■□□□□ 0.26
CLSTN3-211ENST00000541667 MARCH10Q8NA82 808 aaPredicted RBP16.7■□□□□ 0.26
CLSTN3-211ENST00000541667 EDC4Q6P2E9 1401 aaKnown RBP16.7■□□□□ 0.26
CLSTN3-211ENST00000541667 R3HDM1Q15032 1099 aaKnown RBP16.69■□□□□ 0.26
CLSTN3-211ENST00000541667 DDB1Q16531 1140 aa16.69■□□□□ 0.26
CLSTN3-211ENST00000541667 TERF2IPQ9NYB0 399 aa16.69■□□□□ 0.26
CLSTN3-211ENST00000541667 PARD3Q8TEW0 1356 aa16.68■□□□□ 0.26
CLSTN3-211ENST00000541667 LRRC37A3O60309 1634 aa16.67■□□□□ 0.26
CLSTN3-211ENST00000541667 CDCA7Q9BWT1 371 aaPredicted RBP16.67■□□□□ 0.26
CLSTN3-211ENST00000541667 OVOS2A0A0J9YW53 1432 aa16.67■□□□□ 0.26
CLSTN3-211ENST00000541667 OVOS2Q6IE36 1432 aa16.67■□□□□ 0.26
CLSTN3-211ENST00000541667 ABCC6O95255 1503 aa16.66■□□□□ 0.26
CLSTN3-211ENST00000541667 C11orf95C9JLR9 678 aaPredicted RBP16.66■□□□□ 0.26
CLSTN3-211ENST00000541667 BCL9O00512 1426 aa16.66■□□□□ 0.26
CLSTN3-211ENST00000541667 SBF2Q86WG5 1849 aa16.66■□□□□ 0.26
CLSTN3-211ENST00000541667 OVOS2A0A0G2JMS6 1433 aa16.65■□□□□ 0.26
CLSTN3-211ENST00000541667 PLSCR1O15162 318 aa16.65■□□□□ 0.26
CLSTN3-211ENST00000541667 SLC24A1O60721 1099 aa16.65■□□□□ 0.26
CLSTN3-211ENST00000541667 CSB-PGBD3P0DP91 1061 aa16.65■□□□□ 0.26
CLSTN3-211ENST00000541667 FBLN1P23142 703 aa16.65■□□□□ 0.26
CLSTN3-211ENST00000541667 PROM2Q8N271 834 aa16.65■□□□□ 0.26
CLSTN3-211ENST00000541667 ERBB3P21860 1342 aa16.65■□□□□ 0.26
CLSTN3-211ENST00000541667 BCL11BQ9C0K0 894 aaPredicted RBP16.64■□□□□ 0.25
CLSTN3-211ENST00000541667 CCDC7Q96M83 1385 aa16.64■□□□□ 0.25
CLSTN3-211ENST00000541667 NINLQ9Y2I6 1382 aa16.64■□□□□ 0.25
CLSTN3-211ENST00000541667 WNK3Q9BYP7 1800 aa16.63■□□□□ 0.25
CLSTN3-211ENST00000541667 LRP5O75197 1615 aa16.63■□□□□ 0.25
CLSTN3-211ENST00000541667 RREB1Q92766 1687 aa16.63■□□□□ 0.25
CLSTN3-211ENST00000541667 EXOC5O00471 708 aa16.63■□□□□ 0.25
CLSTN3-211ENST00000541667 IP6K1Q92551 441 aa16.63■□□□□ 0.25
CLSTN3-211ENST00000541667 USP47Q96K76 1375 aa16.63■□□□□ 0.25
CLSTN3-211ENST00000541667 ANKRD24Q8TF21 1146 aa16.62■□□□□ 0.25
CLSTN3-211ENST00000541667 TIMELESSQ9UNS1 1208 aa16.62■□□□□ 0.25
CLSTN3-211ENST00000541667 FYB1O15117 783 aa16.61■□□□□ 0.25
CLSTN3-211ENST00000541667 NUP188Q5SRE5 1749 aa16.61■□□□□ 0.25
CLSTN3-211ENST00000541667 ANKRD36BQ8N2N9 1353 aa16.61■□□□□ 0.25
CLSTN3-211ENST00000541667 LTN1O94822 1766 aa16.61■□□□□ 0.25
CLSTN3-211ENST00000541667 TMF1P82094 1093 aa16.6■□□□□ 0.25
CLSTN3-211ENST00000541667 NLRP2Q9NX02 1062 aa16.6■□□□□ 0.25
CLSTN3-211ENST00000541667 KCNQ2O43526 872 aa16.59■□□□□ 0.25
CLSTN3-211ENST00000541667 MAP3K19Q56UN5 1328 aa16.59■□□□□ 0.25
CLSTN3-211ENST00000541667 COG3Q96JB2 828 aa16.58■□□□□ 0.24
CLSTN3-211ENST00000541667 CARD14Q9BXL6 1004 aa16.58■□□□□ 0.24
CLSTN3-211ENST00000541667 CLSPNQ9HAW4 1339 aa16.58■□□□□ 0.24
CLSTN3-211ENST00000541667 TNS2Q63HR2 1409 aa16.57■□□□□ 0.24
CLSTN3-211ENST00000541667 IL2RBP14784 551 aa16.57■□□□□ 0.24
CLSTN3-211ENST00000541667 HOXC9P31274 260 aa16.57■□□□□ 0.24
CLSTN3-211ENST00000541667 NBPF14Q5TI25 921 aa16.57■□□□□ 0.24
CLSTN3-211ENST00000541667 PCGF6Q9BYE7 350 aa16.57■□□□□ 0.24
CLSTN3-211ENST00000541667 ANO8Q9HCE9 1232 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-211ENST00000541667 GGNBP2Q9H3C7 697 aa16.55■□□□□ 0.24
CLSTN3-211ENST00000541667 RGPD3A6NKT7 1758 aaPredicted RBP16.54■□□□□ 0.24
CLSTN3-211ENST00000541667 RGPD4Q7Z3J3 1758 aa16.54■□□□□ 0.24
CLSTN3-211ENST00000541667 LTV1Q96GA3 475 aaPredicted RBP16.54■□□□□ 0.24
CLSTN3-211ENST00000541667 TXNRD1Q16881 649 aa16.53■□□□□ 0.24
CLSTN3-211ENST00000541667 PDGFDQ9GZP0 370 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-211ENST00000541667 RRS1Q15050 365 aaKnown RBP16.52■□□□□ 0.24
CLSTN3-211ENST00000541667 ACSBG1Q96GR2 724 aa16.52■□□□□ 0.24
CLSTN3-211ENST00000541667 AMPHP49418 695 aa16.51■□□□□ 0.23
CLSTN3-211ENST00000541667 CDCA8Q53HL2 280 aa16.51■□□□□ 0.23
CLSTN3-211ENST00000541667 NBPF6Q5VWK0 638 aa16.5■□□□□ 0.23
CLSTN3-211ENST00000541667 NBPF4Q96M43 638 aa16.5■□□□□ 0.23
CLSTN3-211ENST00000541667 HSP90AB2PQ58FF8 381 aa16.49■□□□□ 0.23
CLSTN3-211ENST00000541667 FAM208AQ9UK61 1670 aaKnown RBP16.49■□□□□ 0.23
CLSTN3-211ENST00000541667 RGPD2P0DJD1 1756 aa16.49■□□□□ 0.23
CLSTN3-211ENST00000541667 DDX54Q8TDD1 881 aaKnown RBP16.48■□□□□ 0.23
CLSTN3-211ENST00000541667 NHSQ6T4R5 1651 aa16.48■□□□□ 0.23
CLSTN3-211ENST00000541667 MYOM1P52179 1685 aa16.47■□□□□ 0.23
CLSTN3-211ENST00000541667 RTL1A6NKG5 1358 aa16.47■□□□□ 0.23
CLSTN3-211ENST00000541667 SLC15A2Q16348 729 aa16.46■□□□□ 0.23
CLSTN3-211ENST00000541667 SPON1Q9HCB6 807 aa16.46■□□□□ 0.23
CLSTN3-211ENST00000541667 LRRC4BQ9NT99 713 aa16.46■□□□□ 0.23
CLSTN3-211ENST00000541667 MEGF6O75095 1541 aa16.45■□□□□ 0.22
CLSTN3-211ENST00000541667 ZCRB1Q8TBF4 217 aaKnown RBP16.45■□□□□ 0.22
CLSTN3-211ENST00000541667 INSRP06213 1382 aa16.45■□□□□ 0.22
CLSTN3-211ENST00000541667 CASZ1Q86V15 1759 aa16.45■□□□□ 0.22
CLSTN3-211ENST00000541667 USHBP1Q8N6Y0 703 aa16.44■□□□□ 0.22
CLSTN3-211ENST00000541667 NSD3Q9BZ95 1437 aa16.44■□□□□ 0.22
CLSTN3-211ENST00000541667 BTAF1O14981 1849 aa16.43■□□□□ 0.22
CLSTN3-211ENST00000541667 KAT6BQ8WYB5 2073 aa16.43■□□□□ 0.22
CLSTN3-211ENST00000541667 PTGER2P43116 358 aa16.43■□□□□ 0.22
CLSTN3-211ENST00000541667 PRIM1P49642 420 aaKnown RBP16.43■□□□□ 0.22
CLSTN3-211ENST00000541667 EMILIN1Q9Y6C2 1016 aa16.43■□□□□ 0.22
CLSTN3-211ENST00000541667 SHANK3Q9BYB0 1731 aa16.42■□□□□ 0.22
CLSTN3-211ENST00000541667 NSD2O96028 1365 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms