RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 RREB1Q92766 1687 aa13.74□□□□□ -0.21
CHFR-219ENST00000541341 SBF2Q86WG5 1849 aa13.74□□□□□ -0.21
CHFR-219ENST00000541341 SPATA31A1Q5TZJ5 1347 aa13.73□□□□□ -0.21
CHFR-219ENST00000541341 PPM1GO15355 546 aaPredicted RBP13.73□□□□□ -0.21
CHFR-219ENST00000541341 LMO7Q8WWI1 1683 aa13.72□□□□□ -0.21
CHFR-219ENST00000541341 CAMTA1Q9Y6Y1 1673 aa13.72□□□□□ -0.21
CHFR-219ENST00000541341 EVA1CP58658 441 aa13.72□□□□□ -0.21
CHFR-219ENST00000541341 FAM9BQ8IZU0 186 aa13.72□□□□□ -0.21
CHFR-219ENST00000541341 WNK3Q9BYP7 1800 aa13.71□□□□□ -0.21
CHFR-219ENST00000541341 RALBP1Q15311 655 aa13.71□□□□□ -0.21
CHFR-219ENST00000541341 LARP1Q6PKG0 1096 aaKnown RBP13.71□□□□□ -0.21
CHFR-219ENST00000541341 ABTB2Q8N961 1025 aa13.71□□□□□ -0.21
CHFR-219ENST00000541341 DDRGK1Q96HY6 314 aa13.71□□□□□ -0.21
CHFR-219ENST00000541341 CARD11Q9BXL7 1154 aa13.71□□□□□ -0.21
CHFR-219ENST00000541341 SBNO2Q9Y2G9 1366 aa13.71□□□□□ -0.22
CHFR-219ENST00000541341 APBA3O96018 575 aa13.7□□□□□ -0.22
CHFR-219ENST00000541341 SRPK2P78362 688 aaKnown RBP13.7□□□□□ -0.22
CHFR-219ENST00000541341 CABP2Q9NPB3 220 aa13.7□□□□□ -0.22
CHFR-219ENST00000541341 SSH2Q76I76 1423 aa13.7□□□□□ -0.22
CHFR-219ENST00000541341 USP47Q96K76 1375 aa13.7□□□□□ -0.22
CHFR-219ENST00000541341 AKAP12Q02952 1782 aa13.69□□□□□ -0.22
CHFR-219ENST00000541341 PPIP5K1Q6PFW1 1433 aa13.69□□□□□ -0.22
CHFR-219ENST00000541341 PARP4Q9UKK3 1724 aaKnown RBP13.69□□□□□ -0.22
CHFR-219ENST00000541341 BRD4O60885 1362 aaPredicted RBP13.69□□□□□ -0.22
CHFR-219ENST00000541341 KIF7Q2M1P5 1343 aa13.67□□□□□ -0.22
CHFR-219ENST00000541341 PIK3C2AO00443 1686 aa13.67□□□□□ -0.22
CHFR-219ENST00000541341 CCDC61Q9Y6R9 512 aa13.67□□□□□ -0.22
CHFR-219ENST00000541341 POLR3AO14802 1390 aaPredicted RBP13.67□□□□□ -0.22
CHFR-219ENST00000541341 LRRC37A3O60309 1634 aa13.66□□□□□ -0.22
CHFR-219ENST00000541341 B4GALNT3Q6L9W6 998 aa13.66□□□□□ -0.22
CHFR-219ENST00000541341 FAM196AQ6ZSG2 479 aa13.66□□□□□ -0.22
CHFR-219ENST00000541341 CAMKK2Q96RR4 588 aa13.66□□□□□ -0.22
CHFR-219ENST00000541341 COL18A1P39060 1754 aa13.65□□□□□ -0.22
CHFR-219ENST00000541341 CENPJQ9HC77 1338 aaPredicted RBP13.64□□□□□ -0.23
CHFR-219ENST00000541341 DISP2A7MBM2 1401 aa13.64□□□□□ -0.23
CHFR-219ENST00000541341 COL5A2P05997 1499 aaPredicted RBP13.64□□□□□ -0.23
CHFR-219ENST00000541341 PLEKHG3A1L390 1219 aa13.64□□□□□ -0.23
CHFR-219ENST00000541341 SOX12O15370 315 aa13.64□□□□□ -0.23
CHFR-219ENST00000541341 TMC1Q8TDI8 760 aa13.64□□□□□ -0.23
CHFR-219ENST00000541341 PEAK1Q9H792 1746 aa13.64□□□□□ -0.23
CHFR-219ENST00000541341 KAT6BQ8WYB5 2073 aa13.63□□□□□ -0.23
CHFR-219ENST00000541341 IRX6P78412 446 aaPredicted RBP13.63□□□□□ -0.23
CHFR-219ENST00000541341 TCP11L2Q8N4U5 519 aa13.63□□□□□ -0.23
CHFR-219ENST00000541341 GCP02774 474 aa13.62□□□□□ -0.23
CHFR-219ENST00000541341 TESK2Q96S53 571 aa13.62□□□□□ -0.23
CHFR-219ENST00000541341 CABP1Q9NZU7 370 aa13.62□□□□□ -0.23
CHFR-219ENST00000541341 USP19O94966 1318 aa13.62□□□□□ -0.23
CHFR-219ENST00000541341 LTN1O94822 1766 aa13.61□□□□□ -0.23
CHFR-219ENST00000541341 MYOM1P52179 1685 aa13.61□□□□□ -0.23
CHFR-219ENST00000541341 ST20-MTHFSA0A0A6YYL1 179 aa13.61□□□□□ -0.23
CHFR-219ENST00000541341 SLC24A1O60721 1099 aa13.61□□□□□ -0.23
CHFR-219ENST00000541341 NLRP6P59044 892 aa13.61□□□□□ -0.23
CHFR-219ENST00000541341 BARGINQ6ZT62 677 aa13.61□□□□□ -0.23
CHFR-219ENST00000541341 NLRP13Q86W25 1043 aa13.61□□□□□ -0.23
CHFR-219ENST00000541341 MYBBP1AQ9BQG0 1328 aaKnown RBP13.61□□□□□ -0.23
CHFR-219ENST00000541341 PTF1AQ7RTS3 328 aa13.6□□□□□ -0.23
CHFR-219ENST00000541341 CPDO75976 1380 aa13.59□□□□□ -0.23
CHFR-219ENST00000541341 SLIT3O75094 1523 aa13.59□□□□□ -0.23
CHFR-219ENST00000541341 USP6P35125 1406 aa13.58□□□□□ -0.24
CHFR-219ENST00000541341 CRB1P82279 1406 aa13.58□□□□□ -0.24
CHFR-219ENST00000541341 TOM1L2Q6ZVM7 507 aa13.58□□□□□ -0.24
CHFR-219ENST00000541341 PNISRQ8TF01 805 aaKnown RBP13.58□□□□□ -0.24
CHFR-219ENST00000541341 RGPD3A6NKT7 1758 aaPredicted RBP13.58□□□□□ -0.24
CHFR-219ENST00000541341 RGPD4Q7Z3J3 1758 aa13.58□□□□□ -0.24
CHFR-219ENST00000541341 MON2Q7Z3U7 1717 aa13.57□□□□□ -0.24
CHFR-219ENST00000541341 NBPF14Q5TI25 921 aa13.57□□□□□ -0.24
CHFR-219ENST00000541341 PUS7Q96PZ0 661 aaKnown RBP13.57□□□□□ -0.24
CHFR-219ENST00000541341 AXIN2Q9Y2T1 843 aa13.57□□□□□ -0.24
CHFR-219ENST00000541341 CASZ1Q86V15 1759 aa13.57□□□□□ -0.24
CHFR-219ENST00000541341 PPP1R1BQ9UD71 204 aaPredicted RBP13.56□□□□□ -0.24
CHFR-219ENST00000541341 OVOS2A0A0G2JMS6 1433 aa13.56□□□□□ -0.24
CHFR-219ENST00000541341 OVOS2A0A0J9YW53 1432 aa13.56□□□□□ -0.24
CHFR-219ENST00000541341 OVOS2Q6IE36 1432 aa13.56□□□□□ -0.24
CHFR-219ENST00000541341 C11orf95C9JLR9 678 aaPredicted RBP13.55□□□□□ -0.24
CHFR-219ENST00000541341 DDB1Q16531 1140 aa13.55□□□□□ -0.24
CHFR-219ENST00000541341 DAXXQ9UER7 740 aaPredicted RBP13.55□□□□□ -0.24
CHFR-219ENST00000541341 THRAP3Q9Y2W1 955 aaKnown RBP13.55□□□□□ -0.24
CHFR-219ENST00000541341 PARD3Q8TEW0 1356 aa13.55□□□□□ -0.24
CHFR-219ENST00000541341 RRP1P56182 461 aaKnown RBP13.54□□□□□ -0.24
CHFR-219ENST00000541341 PDGFDQ9GZP0 370 aaPredicted RBP13.54□□□□□ -0.24
CHFR-219ENST00000541341 EVC2Q86UK5 1308 aa13.54□□□□□ -0.24
CHFR-219ENST00000541341 CSB-PGBD3P0DP91 1061 aa13.53□□□□□ -0.24
CHFR-219ENST00000541341 TMF1P82094 1093 aa13.53□□□□□ -0.24
CHFR-219ENST00000541341 ANO8Q9HCE9 1232 aaPredicted RBP13.53□□□□□ -0.24
CHFR-219ENST00000541341 AATKQ6ZMQ8 1374 aa13.53□□□□□ -0.24
CHFR-219ENST00000541341 RGPD2P0DJD1 1756 aa13.53□□□□□ -0.24
CHFR-219ENST00000541341 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.52□□□□□ -0.25
CHFR-219ENST00000541341 MARCH10Q8NA82 808 aaPredicted RBP13.52□□□□□ -0.25
CHFR-219ENST00000541341 RCAN3Q9UKA8 241 aa13.52□□□□□ -0.25
CHFR-219ENST00000541341 TTC21BQ7Z4L5 1316 aa13.52□□□□□ -0.25
CHFR-219ENST00000541341 CPSF1Q10570 1443 aaKnown RBP13.52□□□□□ -0.25
CHFR-219ENST00000541341 BTAF1O14981 1849 aa13.51□□□□□ -0.25
CHFR-219ENST00000541341 NFAT5O94916 1531 aa13.51□□□□□ -0.25
CHFR-219ENST00000541341 WDR17Q8IZU2 1322 aa13.51□□□□□ -0.25
CHFR-219ENST00000541341 KCNQ2O43526 872 aa13.51□□□□□ -0.25
CHFR-219ENST00000541341 CCDC184Q52MB2 194 aa13.51□□□□□ -0.25
CHFR-219ENST00000541341 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.51□□□□□ -0.25
CHFR-219ENST00000541341 ZBTB7AO95365 584 aa13.5□□□□□ -0.25
CHFR-219ENST00000541341 YY1P25490 414 aa13.5□□□□□ -0.25
CHFR-219ENST00000541341 NBR1Q14596 966 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms