RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 EP400Q96L91 3159 aa23.73■■□□□ 1.39
CLSTN3-210ENST00000540931 CC2D1BQ5T0F9 858 aaKnown RBP23.73■■□□□ 1.39
CLSTN3-210ENST00000540931 GJD4Q96KN9 370 aaPredicted RBP23.73■■□□□ 1.39
CLSTN3-210ENST00000540931 SOX12O15370 315 aa23.72■■□□□ 1.39
CLSTN3-210ENST00000540931 BLMP54132 1417 aaPredicted RBP23.72■■□□□ 1.39
CLSTN3-210ENST00000540931 SLIT2O94813 1529 aa23.72■■□□□ 1.39
CLSTN3-210ENST00000540931 UNC5CLQ8IV45 518 aa23.71■■□□□ 1.39
CLSTN3-210ENST00000540931 IP6K1Q92551 441 aa23.71■■□□□ 1.39
CLSTN3-210ENST00000540931 FLT4P35916 1363 aa23.7■■□□□ 1.38
CLSTN3-210ENST00000540931 EVA1CP58658 441 aa23.7■■□□□ 1.38
CLSTN3-210ENST00000540931 MAP3K19Q56UN5 1328 aa23.69■■□□□ 1.38
CLSTN3-210ENST00000540931 BTG4Q9NY30 223 aa23.69■■□□□ 1.38
CLSTN3-210ENST00000540931 ZBTB7CA1YPR0 619 aa23.67■■□□□ 1.38
CLSTN3-210ENST00000540931 SMG6Q86US8 1419 aaKnown RBP23.67■■□□□ 1.38
CLSTN3-210ENST00000540931 LTN1O94822 1766 aa23.66■■□□□ 1.38
CLSTN3-210ENST00000540931 CHRNA2Q15822 529 aa23.66■■□□□ 1.38
CLSTN3-210ENST00000540931 POLKQ9UBT6 870 aa23.66■■□□□ 1.38
CLSTN3-210ENST00000540931 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.66■■□□□ 1.38
CLSTN3-210ENST00000540931 PLCH1Q4KWH8 1693 aa23.65■■□□□ 1.38
CLSTN3-210ENST00000540931 HOXC9P31274 260 aa23.65■■□□□ 1.38
CLSTN3-210ENST00000540931 INSRP06213 1382 aa23.65■■□□□ 1.38
CLSTN3-210ENST00000540931 PARD3Q8TEW0 1356 aa23.65■■□□□ 1.38
CLSTN3-210ENST00000540931 LMO7Q8WWI1 1683 aa23.64■■□□□ 1.38
CLSTN3-210ENST00000540931 TNNT2P45379 298 aaPredicted RBP23.64■■□□□ 1.37
CLSTN3-210ENST00000540931 RRS1Q15050 365 aaKnown RBP23.64■■□□□ 1.37
CLSTN3-210ENST00000540931 VPS72Q15906 364 aa23.64■■□□□ 1.37
CLSTN3-210ENST00000540931 MAP2P11137 1827 aaKnown RBP23.63■■□□□ 1.37
CLSTN3-210ENST00000540931 CFAP53Q96M91 514 aa23.63■■□□□ 1.37
CLSTN3-210ENST00000540931 COL18A1P39060 1754 aa23.62■■□□□ 1.37
CLSTN3-210ENST00000540931 WDR17Q8IZU2 1322 aa23.61■■□□□ 1.37
CLSTN3-210ENST00000540931 GLI3P10071 1580 aa23.61■■□□□ 1.37
CLSTN3-210ENST00000540931 PPM1GO15355 546 aaPredicted RBP23.61■■□□□ 1.37
CLSTN3-210ENST00000540931 ANP32CO43423 234 aa23.61■■□□□ 1.37
CLSTN3-210ENST00000540931 CSB-PGBD3P0DP91 1061 aa23.61■■□□□ 1.37
CLSTN3-210ENST00000540931 THRAP3Q9Y2W1 955 aaKnown RBP23.61■■□□□ 1.37
CLSTN3-210ENST00000540931 COL5A2P05997 1499 aaPredicted RBP23.61■■□□□ 1.37
CLSTN3-210ENST00000540931 CAMTA1Q9Y6Y1 1673 aa23.6■■□□□ 1.37
CLSTN3-210ENST00000540931 ERBB3P21860 1342 aa23.6■■□□□ 1.37
CLSTN3-210ENST00000540931 EMILIN1Q9Y6C2 1016 aa23.6■■□□□ 1.37
CLSTN3-210ENST00000540931 AXIN2Q9Y2T1 843 aa23.59■■□□□ 1.37
CLSTN3-210ENST00000540931 CRB1P82279 1406 aa23.59■■□□□ 1.37
CLSTN3-210ENST00000540931 MTHFSP49914 203 aa23.58■■□□□ 1.37
CLSTN3-210ENST00000540931 ANKRD24Q8TF21 1146 aa23.58■■□□□ 1.37
CLSTN3-210ENST00000540931 STRN4Q9NRL3 753 aa23.58■■□□□ 1.37
CLSTN3-210ENST00000540931 FAM208AQ9UK61 1670 aaKnown RBP23.57■■□□□ 1.36
CLSTN3-210ENST00000540931 TOM1L2Q6ZVM7 507 aa23.57■■□□□ 1.36
CLSTN3-210ENST00000540931 CDCA7Q9BWT1 371 aaPredicted RBP23.57■■□□□ 1.36
CLSTN3-210ENST00000540931 PRKRIP1Q9H875 184 aaPredicted RBP23.57■■□□□ 1.36
CLSTN3-210ENST00000540931 CCDC9Q9Y3X0 531 aaKnown RBP23.57■■□□□ 1.36
CLSTN3-210ENST00000540931 MYBBP1AQ9BQG0 1328 aaKnown RBP23.57■■□□□ 1.36
CLSTN3-210ENST00000540931 NRAPQ86VF7 1730 aa23.56■■□□□ 1.36
CLSTN3-210ENST00000540931 PPP2R1AP30153 589 aa23.56■■□□□ 1.36
CLSTN3-210ENST00000540931 CARD10Q9BWT7 1032 aa23.56■■□□□ 1.36
CLSTN3-210ENST00000540931 FBLN1P23142 703 aa23.55■■□□□ 1.36
CLSTN3-210ENST00000540931 CNGB1Q14028 1251 aaPredicted RBP23.55■■□□□ 1.36
CLSTN3-210ENST00000540931 SPATA31A5Q5VU36 1347 aa23.55■■□□□ 1.36
CLSTN3-210ENST00000540931 SPATA31A7Q8IWB4 1347 aa23.55■■□□□ 1.36
CLSTN3-210ENST00000540931 HSP90AB2PQ58FF8 381 aa23.54■■□□□ 1.36
CLSTN3-210ENST00000540931 DEFB132Q7Z7B7 95 aa23.54■■□□□ 1.36
CLSTN3-210ENST00000540931 SEPT12Q8IYM1 358 aa23.54■■□□□ 1.36
CLSTN3-210ENST00000540931 BRWD3Q6RI45 1802 aa23.54■■□□□ 1.36
CLSTN3-210ENST00000540931 ONECUT3O60422 494 aaPredicted RBP23.53■■□□□ 1.36
CLSTN3-210ENST00000540931 TCP11L2Q8N4U5 519 aa23.53■■□□□ 1.36
CLSTN3-210ENST00000540931 NUDCQ9Y266 331 aa23.53■■□□□ 1.36
CLSTN3-210ENST00000540931 SPATA31A1Q5TZJ5 1347 aa23.53■■□□□ 1.36
CLSTN3-210ENST00000540931 LARP1Q6PKG0 1096 aaKnown RBP23.52■■□□□ 1.36
CLSTN3-210ENST00000540931 BARGINQ6ZT62 677 aa23.52■■□□□ 1.36
CLSTN3-210ENST00000540931 NLRP2Q9NX02 1062 aa23.52■■□□□ 1.36
CLSTN3-210ENST00000540931 DIAPH1O60610 1272 aaKnown RBP23.51■■□□□ 1.35
CLSTN3-210ENST00000540931 PLEKHG2Q9H7P9 1386 aa23.51■■□□□ 1.35
CLSTN3-210ENST00000540931 PEAK1Q9H792 1746 aa23.5■■□□□ 1.35
CLSTN3-210ENST00000540931 LTV1Q96GA3 475 aaPredicted RBP23.49■■□□□ 1.35
CLSTN3-210ENST00000540931 RGPD5Q99666 1765 aa23.49■■□□□ 1.35
CLSTN3-210ENST00000540931 EIF4A2Q14240 407 aaKnown RBP23.47■■□□□ 1.35
CLSTN3-210ENST00000540931 SF3B2Q13435 895 aaKnown RBP23.46■■□□□ 1.35
CLSTN3-210ENST00000540931 KRT27Q7Z3Y8 459 aa23.45■■□□□ 1.34
CLSTN3-210ENST00000540931 DIEXFQ68CQ4 756 aaKnown RBP23.44■■□□□ 1.34
CLSTN3-210ENST00000540931 PNNQ9H307 717 aaKnown RBP23.44■■□□□ 1.34
CLSTN3-210ENST00000540931 IL13P35225 146 aa23.43■■□□□ 1.34
CLSTN3-210ENST00000540931 RAPGEF4Q8WZA2 1011 aa23.43■■□□□ 1.34
CLSTN3-210ENST00000540931 USP35Q9P2H5 1018 aa23.43■■□□□ 1.34
CLSTN3-210ENST00000540931 IGSF1Q8N6C5 1336 aa23.42■■□□□ 1.34
CLSTN3-210ENST00000540931 IL2RBP14784 551 aa23.42■■□□□ 1.34
CLSTN3-210ENST00000540931 NBPF6Q5VWK0 638 aa23.42■■□□□ 1.34
CLSTN3-210ENST00000540931 NBPF4Q96M43 638 aa23.42■■□□□ 1.34
CLSTN3-210ENST00000540931 EYA1Q99502 592 aa23.41■■□□□ 1.34
CLSTN3-210ENST00000540931 NCAPD2Q15021 1401 aa23.41■■□□□ 1.34
CLSTN3-210ENST00000540931 TATP17735 454 aaPredicted RBP23.39■■□□□ 1.33
CLSTN3-210ENST00000540931 FAM98CQ17RN3 349 aaKnown RBP23.39■■□□□ 1.33
CLSTN3-210ENST00000540931 A0A0G2JS52 829 aa23.38■■□□□ 1.33
CLSTN3-210ENST00000540931 MYT1Q01538 1121 aa23.38■■□□□ 1.33
CLSTN3-210ENST00000540931 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.38■■□□□ 1.333e-7■■□□□ 13.3
CLSTN3-210ENST00000540931 LRP5O75197 1615 aa23.37■■□□□ 1.33
CLSTN3-210ENST00000540931 COL3A1P02461 1466 aaPredicted RBP23.37■■□□□ 1.33
CLSTN3-210ENST00000540931 EXOC5O00471 708 aa23.37■■□□□ 1.33
CLSTN3-210ENST00000540931 NEFMP07197 916 aa23.37■■□□□ 1.33
CLSTN3-210ENST00000540931 U2SURPO15042 1029 aaKnown RBP23.36■■□□□ 1.33
CLSTN3-210ENST00000540931 DDB1Q16531 1140 aa23.36■■□□□ 1.33
CLSTN3-210ENST00000540931 KDRP35968 1356 aa23.36■■□□□ 1.33
CLSTN3-210ENST00000540931 FCHSD2O94868 740 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms