RNA–Protein interactions for RNA: ENST00000537429.5

HMGA2-208, Transcript of high mobility group AT-hook 2, human

TSL 1 (best)

Gene HMGA2, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGA2-208	ENST00000537429	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.68	■■■□□ 2.82
HMGA2-208	ENST00000537429	FAM83G	A6ND36	823 aa		32.67	■■■□□ 2.82
HMGA2-208	ENST00000537429	CHRNA2	Q15822	529 aa		32.67	■■■□□ 2.82
HMGA2-208	ENST00000537429	ABCC6	O95255	1503 aa		32.66	■■■□□ 2.82
HMGA2-208	ENST00000537429	INSR	P06213	1382 aa		32.65	■■■□□ 2.82
HMGA2-208	ENST00000537429	MEX3C	Q5U5Q3	659 aa	Known RBP	32.65	■■■□□ 2.82
HMGA2-208	ENST00000537429	LMO7	Q8WWI1	1683 aa		32.64	■■■□□ 2.82
HMGA2-208	ENST00000537429	HSP90AB2P	Q58FF8	381 aa		32.64	■■■□□ 2.82
HMGA2-208	ENST00000537429	AXIN2	Q9Y2T1	843 aa		32.64	■■■□□ 2.82
HMGA2-208	ENST00000537429	COL14A1	Q05707	1796 aa	Known RBP	32.63	■■■□□ 2.81
HMGA2-208	ENST00000537429	CCDC184	Q52MB2	194 aa		32.62	■■■□□ 2.81
HMGA2-208	ENST00000537429	BLM	P54132	1417 aa	Predicted RBP	32.62	■■■□□ 2.81
HMGA2-208	ENST00000537429	CFAP53	Q96M91	514 aa		32.61	■■■□□ 2.81
HMGA2-208	ENST00000537429	RGPD5	Q99666	1765 aa		32.6	■■■□□ 2.81
HMGA2-208	ENST00000537429	COL3A1	P02461	1466 aa	Predicted RBP	32.6	■■■□□ 2.81
HMGA2-208	ENST00000537429	CCER2	I3L3R5	266 aa		32.6	■■■□□ 2.81
HMGA2-208	ENST00000537429	CAMTA1	Q9Y6Y1	1673 aa		32.6	■■■□□ 2.81
HMGA2-208	ENST00000537429	C8orf37	Q96NL8	207 aa		32.59	■■■□□ 2.81
HMGA2-208	ENST00000537429	NGLY1	Q96IV0	654 aa		32.56	■■■□□ 2.8
HMGA2-208	ENST00000537429	PLCH1	Q4KWH8	1693 aa		32.55	■■■□□ 2.8
HMGA2-208	ENST00000537429	MRS2	Q9HD23	443 aa		32.55	■■■□□ 2.8
HMGA2-208	ENST00000537429	BTG4	Q9NY30	223 aa		32.55	■■■□□ 2.8
HMGA2-208	ENST00000537429	DIAPH1	O60610	1272 aa	Known RBP	32.54	■■■□□ 2.8
HMGA2-208	ENST00000537429	EIF4A2	Q14240	407 aa	Known RBP	32.54	■■■□□ 2.8
HMGA2-208	ENST00000537429	SLIT2	O94813	1529 aa		32.53	■■■□□ 2.8
HMGA2-208	ENST00000537429	ERBB3	P21860	1342 aa		32.53	■■■□□ 2.8
HMGA2-208	ENST00000537429	IL13	P35225	146 aa		32.52	■■■□□ 2.8
HMGA2-208	ENST00000537429	ANKRD24	Q8TF21	1146 aa		32.52	■■■□□ 2.8
HMGA2-208	ENST00000537429	COL5A2	P05997	1499 aa	Predicted RBP	32.52	■■■□□ 2.8
HMGA2-208	ENST00000537429	NWD2	Q9ULI1	1742 aa		32.51	■■■□□ 2.8
HMGA2-208	ENST00000537429	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.51	■■■□□ 2.79
HMGA2-208	ENST00000537429	LTV1	Q96GA3	475 aa	Predicted RBP	32.51	■■■□□ 2.79
HMGA2-208	ENST00000537429	EVA1C	P58658	441 aa		32.48	■■■□□ 2.79
HMGA2-208	ENST00000537429	NRAP	Q86VF7	1730 aa		32.47	■■■□□ 2.79
HMGA2-208	ENST00000537429	STRN4	Q9NRL3	753 aa		32.46	■■■□□ 2.79
HMGA2-208	ENST00000537429	NUDC	Q9Y266	331 aa		32.46	■■■□□ 2.79
HMGA2-208	ENST00000537429	WDR17	Q8IZU2	1322 aa		32.45	■■■□□ 2.79
HMGA2-208	ENST00000537429	BCL9L	Q86UU0	1499 aa		32.44	■■■□□ 2.78
HMGA2-208	ENST00000537429	CSB-PGBD3	P0DP91	1061 aa		32.44	■■■□□ 2.78
HMGA2-208	ENST00000537429	PNISR	Q8TF01	805 aa	Known RBP	32.44	■■■□□ 2.78
HMGA2-208	ENST00000537429	FAM208A	Q9UK61	1670 aa	Known RBP	32.43	■■■□□ 2.78
HMGA2-208	ENST00000537429	EYA1	Q99502	592 aa		32.43	■■■□□ 2.78
HMGA2-208	ENST00000537429	RGPD1	P0DJD0	1748 aa		32.43	■■■□□ 2.78
HMGA2-208	ENST00000537429	UNC5CL	Q8IV45	518 aa		32.42	■■■□□ 2.78
HMGA2-208	ENST00000537429	RGPD2	P0DJD1	1756 aa		32.42	■■■□□ 2.78
HMGA2-208	ENST00000537429	NBPF6	Q5VWK0	638 aa		32.41	■■■□□ 2.78
HMGA2-208	ENST00000537429	NBPF4	Q96M43	638 aa		32.41	■■■□□ 2.78
HMGA2-208	ENST00000537429	AFF2	P51816	1311 aa		32.41	■■■□□ 2.78
HMGA2-208	ENST00000537429	U2SURP	O15042	1029 aa	Known RBP	32.41	■■■□□ 2.78
HMGA2-208	ENST00000537429	LARP1	Q6PKG0	1096 aa	Known RBP	32.41	■■■□□ 2.78
HMGA2-208	ENST00000537429	USP21	Q9UK80	565 aa		32.41	■■■□□ 2.78
HMGA2-208	ENST00000537429	IGSF1	Q8N6C5	1336 aa		32.4	■■■□□ 2.78
HMGA2-208	ENST00000537429	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	32.39	■■■□□ 2.78
HMGA2-208	ENST00000537429	TOM1L2	Q6ZVM7	507 aa		32.38	■■■□□ 2.77
HMGA2-208	ENST00000537429	CRB1	P82279	1406 aa		32.38	■■■□□ 2.77
HMGA2-208	ENST00000537429	WDR43	Q15061	677 aa	Known RBP eCLIP	32.37	■■■□□ 2.77
HMGA2-208	ENST00000537429	NLRP2	Q9NX02	1062 aa		32.37	■■■□□ 2.77
HMGA2-208	ENST00000537429	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.36	■■■□□ 2.77
HMGA2-208	ENST00000537429	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.36	■■■□□ 2.77	8e-8	■■□□□ 13.6
HMGA2-208	ENST00000537429	NCAPD2	Q15021	1401 aa		32.36	■■■□□ 2.77
HMGA2-208	ENST00000537429	CARD10	Q9BWT7	1032 aa		32.36	■■■□□ 2.77
HMGA2-208	ENST00000537429	ADAMTS8	Q9UP79	889 aa		32.34	■■■□□ 2.77
HMGA2-208	ENST00000537429	CCDC9	Q9Y3X0	531 aa	Known RBP	32.34	■■■□□ 2.77
HMGA2-208	ENST00000537429	SULT6B1	Q6IMI4	303 aa		32.33	■■■□□ 2.77
HMGA2-208	ENST00000537429	USHBP1	Q8N6Y0	703 aa		32.33	■■■□□ 2.77
HMGA2-208	ENST00000537429	KDR	P35968	1356 aa		32.33	■■■□□ 2.77
HMGA2-208	ENST00000537429	VPS72	Q15906	364 aa		32.32	■■■□□ 2.76
HMGA2-208	ENST00000537429	PHF23	Q9BUL5	403 aa	Predicted RBP	32.32	■■■□□ 2.76
HMGA2-208	ENST00000537429	HMOX1	P09601	288 aa		32.31	■■■□□ 2.76
HMGA2-208	ENST00000537429	AEBP1	Q8IUX7	1158 aa		32.31	■■■□□ 2.76
HMGA2-208	ENST00000537429	FAM9B	Q8IZU0	186 aa		32.31	■■■□□ 2.76
HMGA2-208	ENST00000537429	USP35	Q9P2H5	1018 aa		32.3	■■■□□ 2.76
HMGA2-208	ENST00000537429	SPATA31A5	Q5VU36	1347 aa		32.29	■■■□□ 2.76
HMGA2-208	ENST00000537429	SPATA31A7	Q8IWB4	1347 aa		32.29	■■■□□ 2.76
HMGA2-208	ENST00000537429	FCHSD2	O94868	740 aa		32.29	■■■□□ 2.76
HMGA2-208	ENST00000537429	SPATA31A1	Q5TZJ5	1347 aa		32.29	■■■□□ 2.76
HMGA2-208	ENST00000537429	RSPH6A	Q9H0K4	717 aa		32.28	■■■□□ 2.76
HMGA2-208	ENST00000537429	ZNF772	Q68DY9	489 aa	Predicted RBP	32.27	■■■□□ 2.76
HMGA2-208	ENST00000537429	ATRN	O75882	1429 aa		32.27	■■■□□ 2.76
HMGA2-208	ENST00000537429	TRPC5	Q9UL62	973 aa	Predicted RBP	32.26	■■■□□ 2.76
HMGA2-208	ENST00000537429	QTRT2	Q9H974	415 aa	Known RBP	32.25	■■■□□ 2.75
HMGA2-208	ENST00000537429	TCP11L2	Q8N4U5	519 aa		32.24	■■■□□ 2.75
HMGA2-208	ENST00000537429	THRAP3	Q9Y2W1	955 aa	Known RBP	32.24	■■■□□ 2.75
HMGA2-208	ENST00000537429	PRKAR2B	P31323	418 aa		32.21	■■■□□ 2.75
HMGA2-208	ENST00000537429	GJD4	Q96KN9	370 aa	Predicted RBP	32.21	■■■□□ 2.75
HMGA2-208	ENST00000537429	PLEKHF1	Q96S99	279 aa		32.21	■■■□□ 2.75
HMGA2-208	ENST00000537429	PNN	Q9H307	717 aa	Known RBP	32.21	■■■□□ 2.75
HMGA2-208	ENST00000537429	RAPGEF4	Q8WZA2	1011 aa		32.2	■■■□□ 2.74
HMGA2-208	ENST00000537429	RGS17	Q9UGC6	210 aa	Predicted RBP	32.2	■■■□□ 2.74
HMGA2-208	ENST00000537429	GLI3	P10071	1580 aa		32.18	■■■□□ 2.74
HMGA2-208	ENST00000537429	MEGF6	O75095	1541 aa		32.18	■■■□□ 2.74
HMGA2-208	ENST00000537429	BARGIN	Q6ZT62	677 aa		32.18	■■■□□ 2.74
HMGA2-208	ENST00000537429	DISP2	A7MBM2	1401 aa		32.17	■■■□□ 2.74
HMGA2-208	ENST00000537429	IL2RB	P14784	551 aa		32.17	■■■□□ 2.74
HMGA2-208	ENST00000537429	CCDC146	Q8IYE0	955 aa		32.16	■■■□□ 2.74
HMGA2-208	ENST00000537429	RUNDC1	Q96C34	613 aa		32.16	■■■□□ 2.74
HMGA2-208	ENST00000537429	WNK3	Q9BYP7	1800 aa		32.16	■■■□□ 2.74
HMGA2-208	ENST00000537429	TAT	P17735	454 aa	Predicted RBP	32.16	■■■□□ 2.74
HMGA2-208	ENST00000537429	PLEKHG2	Q9H7P9	1386 aa		32.15	■■■□□ 2.74
HMGA2-208	ENST00000537429	PHACTR3	Q96KR7	559 aa		32.15	■■■□□ 2.74

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