RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 TRPC5Q9UL62 973 aaPredicted RBP12.58□□□□□ -0.4
CIITA-203ENST00000537380 CNGB1Q14028 1251 aaPredicted RBP12.57□□□□□ -0.4
CIITA-203ENST00000537380 NCBP3Q53F19 620 aaKnown RBP12.57□□□□□ -0.4
CIITA-203ENST00000537380 BLMP54132 1417 aaPredicted RBP12.56□□□□□ -0.4
CIITA-203ENST00000537380 WDR43Q15061 677 aaKnown RBP eCLIP12.56□□□□□ -0.4
CIITA-203ENST00000537380 FAM9BQ8IZU0 186 aa12.56□□□□□ -0.4
CIITA-203ENST00000537380 POLKQ9UBT6 870 aa12.56□□□□□ -0.4
CIITA-203ENST00000537380 MAP2P11137 1827 aaKnown RBP12.55□□□□□ -0.4
CIITA-203ENST00000537380 LMO7Q8WWI1 1683 aa12.55□□□□□ -0.4
CIITA-203ENST00000537380 COL3A1P02461 1466 aaPredicted RBP12.55□□□□□ -0.4
CIITA-203ENST00000537380 ABTB2Q8N961 1025 aa12.55□□□□□ -0.4
CIITA-203ENST00000537380 CPDO75976 1380 aa12.55□□□□□ -0.4
CIITA-203ENST00000537380 UPF1Q92900 1129 aaKnown RBP eCLIP12.54□□□□□ -0.4
CIITA-203ENST00000537380 NUDCQ9Y266 331 aa12.54□□□□□ -0.4
CIITA-203ENST00000537380 ZBED9Q6R2W3 1325 aa12.54□□□□□ -0.4
CIITA-203ENST00000537380 GLI3P10071 1580 aa12.53□□□□□ -0.4
CIITA-203ENST00000537380 FAM83GA6ND36 823 aa12.53□□□□□ -0.4
CIITA-203ENST00000537380 NLRP6P59044 892 aa12.53□□□□□ -0.4
CIITA-203ENST00000537380 UNC5CLQ8IV45 518 aa12.53□□□□□ -0.4
CIITA-203ENST00000537380 KCNH5Q8NCM2 988 aa12.53□□□□□ -0.4
CIITA-203ENST00000537380 KIAA0232Q92628 1395 aa12.53□□□□□ -0.4
CIITA-203ENST00000537380 NFAT5O94916 1531 aa12.52□□□□□ -0.4
CIITA-203ENST00000537380 TNNT2P45379 298 aaPredicted RBP12.52□□□□□ -0.41
CIITA-203ENST00000537380 NUTM2GQ5VZR2 741 aa12.52□□□□□ -0.41
CIITA-203ENST00000537380 YTHDC1Q96MU7 727 aaKnown RBP12.52□□□□□ -0.41
CIITA-203ENST00000537380 PNNQ9H307 717 aaKnown RBP12.52□□□□□ -0.41
CIITA-203ENST00000537380 ADAMTS8Q9UP79 889 aa12.52□□□□□ -0.41
CIITA-203ENST00000537380 RTL1A6NKG5 1358 aa12.52□□□□□ -0.41
CIITA-203ENST00000537380 RGS12O14924 1447 aa12.52□□□□□ -0.41
CIITA-203ENST00000537380 COL18A1P39060 1754 aa12.51□□□□□ -0.41
CIITA-203ENST00000537380 PLEKHG5O94827 1062 aa12.51□□□□□ -0.41
CIITA-203ENST00000537380 HNRNPUQ00839 825 aaKnown RBP eCLIP12.51□□□□□ -0.41
CIITA-203ENST00000537380 ZRANB1Q9UGI0 708 aa12.51□□□□□ -0.41
CIITA-203ENST00000537380 DIAPH1O60610 1272 aaKnown RBP12.5□□□□□ -0.41
CIITA-203ENST00000537380 GCP02774 474 aa12.5□□□□□ -0.41
CIITA-203ENST00000537380 PRDM11Q9NQV5 511 aa12.5□□□□□ -0.41
CIITA-203ENST00000537380 ABCC6O95255 1503 aa12.5□□□□□ -0.41
CIITA-203ENST00000537380 CAMTA1Q9Y6Y1 1673 aa12.49□□□□□ -0.41
CIITA-203ENST00000537380 FLT4P35916 1363 aa12.49□□□□□ -0.41
CIITA-203ENST00000537380 VPS72Q15906 364 aa12.49□□□□□ -0.41
CIITA-203ENST00000537380 CCDC9Q9Y3X0 531 aaKnown RBP12.49□□□□□ -0.41
CIITA-203ENST00000537380 EP400Q96L91 3159 aa12.49□□□□□ -0.41
CIITA-203ENST00000537380 FCHSD2O94868 740 aa12.48□□□□□ -0.41
CIITA-203ENST00000537380 PDE3BQ13370 1112 aa12.48□□□□□ -0.41
CIITA-203ENST00000537380 GJD4Q96KN9 370 aaPredicted RBP12.48□□□□□ -0.41
CIITA-203ENST00000537380 BTG4Q9NY30 223 aa12.48□□□□□ -0.41
CIITA-203ENST00000537380 MAP3K19Q56UN5 1328 aa12.47□□□□□ -0.41
CIITA-203ENST00000537380 IL13P35225 146 aa12.47□□□□□ -0.41
CIITA-203ENST00000537380 ZC3H6P61129 1189 aaKnown RBP12.47□□□□□ -0.41
CIITA-203ENST00000537380 RUNDC1Q96C34 613 aa12.47□□□□□ -0.41
CIITA-203ENST00000537380 EMILIN1Q9Y6C2 1016 aa12.47□□□□□ -0.41
CIITA-203ENST00000537380 LTN1O94822 1766 aa12.47□□□□□ -0.41
CIITA-203ENST00000537380 COL5A2P05997 1499 aaPredicted RBP12.46□□□□□ -0.41
CIITA-203ENST00000537380 THSD7AQ9UPZ6 1657 aa12.46□□□□□ -0.41
CIITA-203ENST00000537380 A0A0G2JS52 829 aa12.46□□□□□ -0.41
CIITA-203ENST00000537380 MYT1Q01538 1121 aa12.46□□□□□ -0.41
CIITA-203ENST00000537380 SF3B2Q13435 895 aaKnown RBP12.46□□□□□ -0.41
CIITA-203ENST00000537380 CHRNA2Q15822 529 aa12.46□□□□□ -0.41
CIITA-203ENST00000537380 RGPD5Q99666 1765 aa12.46□□□□□ -0.42
CIITA-203ENST00000537380 RRS1Q15050 365 aaKnown RBP12.45□□□□□ -0.42
CIITA-203ENST00000537380 ARHGEF25Q86VW2 580 aa12.45□□□□□ -0.42
CIITA-203ENST00000537380 BRWD3Q6RI45 1802 aa12.45□□□□□ -0.42
CIITA-203ENST00000537380 PEAK1Q9H792 1746 aa12.45□□□□□ -0.42
CIITA-203ENST00000537380 SPATA31A5Q5VU36 1347 aa12.44□□□□□ -0.42
CIITA-203ENST00000537380 SPATA31A7Q8IWB4 1347 aa12.44□□□□□ -0.42
CIITA-203ENST00000537380 ONECUT3O60422 494 aaPredicted RBP12.44□□□□□ -0.42
CIITA-203ENST00000537380 U2AF1L5P0DN76 240 aaPredicted RBP12.44□□□□□ -0.42
CIITA-203ENST00000537380 U2AF1Q01081 240 aaKnown RBP eCLIP12.44□□□□□ -0.42
CIITA-203ENST00000537380 CCDC27Q2M243 656 aa12.44□□□□□ -0.42
CIITA-203ENST00000537380 CCDC125Q86Z20 511 aa12.44□□□□□ -0.42
CIITA-203ENST00000537380 IP6K1Q92551 441 aa12.44□□□□□ -0.42
CIITA-203ENST00000537380 RGPD1P0DJD0 1748 aa12.43□□□□□ -0.42
CIITA-203ENST00000537380 AMPHP49418 695 aa12.43□□□□□ -0.42
CIITA-203ENST00000537380 PLEKHF1Q96S99 279 aa12.43□□□□□ -0.42
CIITA-203ENST00000537380 ZNF521Q96K83 1311 aa12.42□□□□□ -0.42
CIITA-203ENST00000537380 PPM1GO15355 546 aaPredicted RBP12.42□□□□□ -0.42
CIITA-203ENST00000537380 FBLN1P23142 703 aa12.42□□□□□ -0.42
CIITA-203ENST00000537380 HOXC9P31274 260 aa12.42□□□□□ -0.42
CIITA-203ENST00000537380 EIF4A2Q14240 407 aaKnown RBP12.42□□□□□ -0.42
CIITA-203ENST00000537380 KDRP35968 1356 aa12.42□□□□□ -0.42
CIITA-203ENST00000537380 PLEKHG2Q9H7P9 1386 aa12.42□□□□□ -0.42
CIITA-203ENST00000537380 WNK3Q9BYP7 1800 aa12.41□□□□□ -0.42
CIITA-203ENST00000537380 SPATA31A1Q5TZJ5 1347 aa12.41□□□□□ -0.42
CIITA-203ENST00000537380 RSPH6AQ9H0K4 717 aa12.41□□□□□ -0.42
CIITA-203ENST00000537380 IGSF1Q8N6C5 1336 aa12.4□□□□□ -0.42
CIITA-203ENST00000537380 CRB1P82279 1406 aa12.4□□□□□ -0.42
CIITA-203ENST00000537380 U2SURPO15042 1029 aaKnown RBP12.4□□□□□ -0.42
CIITA-203ENST00000537380 HSP90AB2PQ58FF8 381 aa12.4□□□□□ -0.42
CIITA-203ENST00000537380 AXIN2Q9Y2T1 843 aa12.4□□□□□ -0.42
CIITA-203ENST00000537380 PARP4Q9UKK3 1724 aaKnown RBP12.4□□□□□ -0.43
CIITA-203ENST00000537380 FAM208AQ9UK61 1670 aaKnown RBP12.39□□□□□ -0.43
CIITA-203ENST00000537380 NCAPD2Q15021 1401 aa12.39□□□□□ -0.43
CIITA-203ENST00000537380 APAF1O14727 1248 aa12.39□□□□□ -0.43
CIITA-203ENST00000537380 NEFMP07197 916 aa12.39□□□□□ -0.43
CIITA-203ENST00000537380 TCP11L2Q8N4U5 519 aa12.39□□□□□ -0.43
CIITA-203ENST00000537380 STRN4Q9NRL3 753 aa12.39□□□□□ -0.43
CIITA-203ENST00000537380 WDR17Q8IZU2 1322 aa12.38□□□□□ -0.43
CIITA-203ENST00000537380 SOX12O15370 315 aa12.38□□□□□ -0.43
CIITA-203ENST00000537380 LARP1Q6PKG0 1096 aaKnown RBP12.38□□□□□ -0.43
CIITA-203ENST00000537380 WDR63Q8IWG1 891 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms