RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 WDR17Q8IZU2 1322 aa19.72■□□□□ 0.75
SYNE1-235ENST00000537033 USP54Q70EL1 1684 aa19.71■□□□□ 0.75
SYNE1-235ENST00000537033 RREB1Q92766 1687 aa19.71■□□□□ 0.75
SYNE1-235ENST00000537033 NFAT5O94916 1531 aa19.71■□□□□ 0.75
SYNE1-235ENST00000537033 ABCC6O95255 1503 aa19.71■□□□□ 0.75
SYNE1-235ENST00000537033 OVOS2A0A0G2JMS6 1433 aa19.71■□□□□ 0.75
SYNE1-235ENST00000537033 OVOS2A0A0J9YW53 1432 aa19.71■□□□□ 0.75
SYNE1-235ENST00000537033 OVOS2Q6IE36 1432 aa19.71■□□□□ 0.75
SYNE1-235ENST00000537033 TMC1Q8TDI8 760 aa19.71■□□□□ 0.75
SYNE1-235ENST00000537033 CSB-PGBD3P0DP91 1061 aa19.7■□□□□ 0.74
SYNE1-235ENST00000537033 HDGFL2Q7Z4V5 671 aaPredicted RBP19.7■□□□□ 0.74
SYNE1-235ENST00000537033 ARHGEF25Q86VW2 580 aa19.7■□□□□ 0.74
SYNE1-235ENST00000537033 TRIM26Q12899 539 aaPredicted RBP19.69■□□□□ 0.74
SYNE1-235ENST00000537033 DDB1Q16531 1140 aa19.69■□□□□ 0.74
SYNE1-235ENST00000537033 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.69■□□□□ 0.74
SYNE1-235ENST00000537033 CAMKK2Q96RR4 588 aa19.69■□□□□ 0.74
SYNE1-235ENST00000537033 PEAK1Q9H792 1746 aa19.68■□□□□ 0.74
SYNE1-235ENST00000537033 LTN1O94822 1766 aa19.68■□□□□ 0.74
SYNE1-235ENST00000537033 R3HDM1Q15032 1099 aaKnown RBP19.68■□□□□ 0.74
SYNE1-235ENST00000537033 CDCA7Q9BWT1 371 aaPredicted RBP19.68■□□□□ 0.74
SYNE1-235ENST00000537033 AXIN2Q9Y2T1 843 aa19.68■□□□□ 0.74
SYNE1-235ENST00000537033 NUP188Q5SRE5 1749 aa19.68■□□□□ 0.74
SYNE1-235ENST00000537033 CD163L1Q9NR16 1453 aa19.67■□□□□ 0.74
SYNE1-235ENST00000537033 TERF2IPQ9NYB0 399 aa19.67■□□□□ 0.74
SYNE1-235ENST00000537033 EDC4Q6P2E9 1401 aaKnown RBP19.67■□□□□ 0.74
SYNE1-235ENST00000537033 SBF2Q86WG5 1849 aa19.66■□□□□ 0.74
SYNE1-235ENST00000537033 USP31Q70CQ4 1352 aa19.66■□□□□ 0.74
SYNE1-235ENST00000537033 RGPD3A6NKT7 1758 aaPredicted RBP19.65■□□□□ 0.74
SYNE1-235ENST00000537033 RGPD4Q7Z3J3 1758 aa19.65■□□□□ 0.74
SYNE1-235ENST00000537033 SLC24A1O60721 1099 aa19.64■□□□□ 0.73
SYNE1-235ENST00000537033 NME9Q86XW9 330 aa19.64■□□□□ 0.73
SYNE1-235ENST00000537033 PUS7Q96PZ0 661 aaKnown RBP19.64■□□□□ 0.73
SYNE1-235ENST00000537033 CARD10Q9BWT7 1032 aa19.64■□□□□ 0.73
SYNE1-235ENST00000537033 CCDC7Q96M83 1385 aa19.64■□□□□ 0.73
SYNE1-235ENST00000537033 NINLQ9Y2I6 1382 aa19.64■□□□□ 0.73
SYNE1-235ENST00000537033 A0A1W2PP64 1363 aa19.63■□□□□ 0.73
SYNE1-235ENST00000537033 NBPF14Q5TI25 921 aa19.63■□□□□ 0.73
SYNE1-235ENST00000537033 SLC12A5Q9H2X9 1139 aa19.63■□□□□ 0.73
SYNE1-235ENST00000537033 ST20-MTHFSA0A0A6YYL1 179 aa19.59■□□□□ 0.73
SYNE1-235ENST00000537033 ERBB3P21860 1342 aa19.58■□□□□ 0.73
SYNE1-235ENST00000537033 TESK2Q96S53 571 aa19.58■□□□□ 0.72
SYNE1-235ENST00000537033 BCL9O00512 1426 aa19.58■□□□□ 0.72
SYNE1-235ENST00000537033 TNS2Q63HR2 1409 aa19.58■□□□□ 0.72
SYNE1-235ENST00000537033 EXOC5O00471 708 aa19.57■□□□□ 0.72
SYNE1-235ENST00000537033 MARCH10Q8NA82 808 aaPredicted RBP19.57■□□□□ 0.72
SYNE1-235ENST00000537033 BCL11BQ9C0K0 894 aaPredicted RBP19.57■□□□□ 0.72
SYNE1-235ENST00000537033 NLRP2Q9NX02 1062 aa19.57■□□□□ 0.72
SYNE1-235ENST00000537033 FAM208AQ9UK61 1670 aaKnown RBP19.56■□□□□ 0.72
SYNE1-235ENST00000537033 PLSCR1O15162 318 aa19.54■□□□□ 0.72
SYNE1-235ENST00000537033 USP47Q96K76 1375 aa19.54■□□□□ 0.72
SYNE1-235ENST00000537033 ANKRD24Q8TF21 1146 aa19.53■□□□□ 0.72
SYNE1-235ENST00000537033 COG3Q96JB2 828 aa19.53■□□□□ 0.72
SYNE1-235ENST00000537033 NHSQ6T4R5 1651 aa19.52■□□□□ 0.72
SYNE1-235ENST00000537033 IL2RBP14784 551 aa19.52■□□□□ 0.72
SYNE1-235ENST00000537033 TMF1P82094 1093 aa19.52■□□□□ 0.72
SYNE1-235ENST00000537033 ANKRD36BQ8N2N9 1353 aa19.52■□□□□ 0.72
SYNE1-235ENST00000537033 IP6K1Q92551 441 aa19.49■□□□□ 0.71
SYNE1-235ENST00000537033 CDCA8Q53HL2 280 aa19.48■□□□□ 0.71
SYNE1-235ENST00000537033 PTF1AQ7RTS3 328 aa19.48■□□□□ 0.71
SYNE1-235ENST00000537033 KIF20BQ96Q89 1820 aa19.47■□□□□ 0.71
SYNE1-235ENST00000537033 SPON1Q9HCB6 807 aa19.47■□□□□ 0.71
SYNE1-235ENST00000537033 AMPHP49418 695 aa19.46■□□□□ 0.71
SYNE1-235ENST00000537033 LTV1Q96GA3 475 aaPredicted RBP19.46■□□□□ 0.71
SYNE1-235ENST00000537033 PPP1R1BQ9UD71 204 aaPredicted RBP19.45■□□□□ 0.7
SYNE1-235ENST00000537033 MAP3K19Q56UN5 1328 aa19.45■□□□□ 0.7
SYNE1-235ENST00000537033 CASZ1Q86V15 1759 aa19.44■□□□□ 0.7
SYNE1-235ENST00000537033 BTAF1O14981 1849 aa19.44■□□□□ 0.7
SYNE1-235ENST00000537033 TXNRD1Q16881 649 aa19.44■□□□□ 0.7
SYNE1-235ENST00000537033 ANO8Q9HCE9 1232 aaPredicted RBP19.44■□□□□ 0.7
SYNE1-235ENST00000537033 TIMELESSQ9UNS1 1208 aa19.44■□□□□ 0.7
SYNE1-235ENST00000537033 RTL1A6NKG5 1358 aa19.44■□□□□ 0.7
SYNE1-235ENST00000537033 KCNQ2O43526 872 aa19.43■□□□□ 0.7
SYNE1-235ENST00000537033 ACSBG1Q96GR2 724 aa19.43■□□□□ 0.7
SYNE1-235ENST00000537033 KAT6BQ8WYB5 2073 aa19.43■□□□□ 0.7
SYNE1-235ENST00000537033 CLSPNQ9HAW4 1339 aa19.43■□□□□ 0.7
SYNE1-235ENST00000537033 RGPD2P0DJD1 1756 aa19.42■□□□□ 0.7
SYNE1-235ENST00000537033 HOXC9P31274 260 aa19.42■□□□□ 0.7
SYNE1-235ENST00000537033 STK32BQ9NY57 414 aa19.42■□□□□ 0.7
SYNE1-235ENST00000537033 SMG6Q86US8 1419 aaKnown RBP19.42■□□□□ 0.7
SYNE1-235ENST00000537033 MYOM1P52179 1685 aa19.41■□□□□ 0.7
SYNE1-235ENST00000537033 PROM2Q8N271 834 aa19.41■□□□□ 0.7
SYNE1-235ENST00000537033 PCGF6Q9BYE7 350 aa19.4■□□□□ 0.7
SYNE1-235ENST00000537033 FYB1O15117 783 aa19.39■□□□□ 0.69
SYNE1-235ENST00000537033 DDX54Q8TDD1 881 aaKnown RBP19.39■□□□□ 0.69
SYNE1-235ENST00000537033 GGNBP2Q9H3C7 697 aa19.39■□□□□ 0.69
SYNE1-235ENST00000537033 RRS1Q15050 365 aaKnown RBP19.38■□□□□ 0.69
SYNE1-235ENST00000537033 DOT1LQ8TEK3 1739 aa19.37■□□□□ 0.69
SYNE1-235ENST00000537033 FBLN1P23142 703 aa19.37■□□□□ 0.69
SYNE1-235ENST00000537033 SLC15A2Q16348 729 aa19.36■□□□□ 0.69
SYNE1-235ENST00000537033 SHANK3Q9BYB0 1731 aa19.36■□□□□ 0.69
SYNE1-235ENST00000537033 PAPPAQ13219 1627 aa19.36■□□□□ 0.69
SYNE1-235ENST00000537033 DCAF8L1A6NGE4 600 aa19.35■□□□□ 0.69
SYNE1-235ENST00000537033 KIF24Q5T7B8 1368 aa19.34■□□□□ 0.69
SYNE1-235ENST00000537033 ZBTB7AO95365 584 aa19.34■□□□□ 0.69
SYNE1-235ENST00000537033 ZCRB1Q8TBF4 217 aaKnown RBP19.34■□□□□ 0.69
SYNE1-235ENST00000537033 MEGF6O75095 1541 aa19.34■□□□□ 0.69
SYNE1-235ENST00000537033 NSD3Q9BZ95 1437 aa19.34■□□□□ 0.69
SYNE1-235ENST00000537033 FLT4P35916 1363 aa19.33■□□□□ 0.69
SYNE1-235ENST00000537033 SYTL4Q96C24 671 aaPredicted RBP19.33■□□□□ 0.68
SYNE1-235ENST00000537033 CGNL1Q0VF96 1302 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms