RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SPATA31A1Q5TZJ5 1347 aa16.29■□□□□ 0.2
CLIP1-208ENST00000537004 ARHGEF25Q86VW2 580 aa16.28■□□□□ 0.2
CLIP1-208ENST00000537004 FAM182BQ5T319 152 aa16.28■□□□□ 0.2
CLIP1-208ENST00000537004 POLR3GLQ9BT43 218 aa16.28■□□□□ 0.2
CLIP1-208ENST00000537004 MON2Q7Z3U7 1717 aa16.27■□□□□ 0.2
CLIP1-208ENST00000537004 KCNH5Q8NCM2 988 aa16.27■□□□□ 0.2
CLIP1-208ENST00000537004 NINLQ9Y2I6 1382 aa16.27■□□□□ 0.19
CLIP1-208ENST00000537004 AATKQ6ZMQ8 1374 aa16.26■□□□□ 0.19
CLIP1-208ENST00000537004 USP31Q70CQ4 1352 aa16.26■□□□□ 0.19
CLIP1-208ENST00000537004 FBLN1P23142 703 aa16.26■□□□□ 0.19
CLIP1-208ENST00000537004 PRKRIP1Q9H875 184 aaPredicted RBP16.26■□□□□ 0.19
CLIP1-208ENST00000537004 ANKRD36BQ8N2N9 1353 aa16.25■□□□□ 0.19
CLIP1-208ENST00000537004 LMO7Q8WWI1 1683 aa16.25■□□□□ 0.19
CLIP1-208ENST00000537004 COL5A2P05997 1499 aaPredicted RBP16.25■□□□□ 0.19
CLIP1-208ENST00000537004 CDCA8Q53HL2 280 aa16.25■□□□□ 0.19
CLIP1-208ENST00000537004 KRT27Q7Z3Y8 459 aa16.25■□□□□ 0.19
CLIP1-208ENST00000537004 NFAT5O94916 1531 aa16.24■□□□□ 0.19
CLIP1-208ENST00000537004 CARD14Q9BXL6 1004 aa16.23■□□□□ 0.19
CLIP1-208ENST00000537004 GGNBP2Q9H3C7 697 aa16.23■□□□□ 0.19
CLIP1-208ENST00000537004 TCP11L2Q8N4U5 519 aa16.22■□□□□ 0.19
CLIP1-208ENST00000537004 OVOS2A0A0J9YW53 1432 aa16.22■□□□□ 0.19
CLIP1-208ENST00000537004 OVOS2Q6IE36 1432 aa16.22■□□□□ 0.19
CLIP1-208ENST00000537004 BRWD3Q6RI45 1802 aa16.21■□□□□ 0.19
CLIP1-208ENST00000537004 FYB1O15117 783 aa16.21■□□□□ 0.19
CLIP1-208ENST00000537004 TOM1L2Q6ZVM7 507 aa16.21■□□□□ 0.19
CLIP1-208ENST00000537004 COG3Q96JB2 828 aa16.2■□□□□ 0.18
CLIP1-208ENST00000537004 CSB-PGBD3P0DP91 1061 aa16.19■□□□□ 0.18
CLIP1-208ENST00000537004 BARGINQ6ZT62 677 aa16.19■□□□□ 0.18
CLIP1-208ENST00000537004 COL18A1P39060 1754 aa16.19■□□□□ 0.18
CLIP1-208ENST00000537004 WDR17Q8IZU2 1322 aa16.19■□□□□ 0.18
CLIP1-208ENST00000537004 CRB1P82279 1406 aa16.19■□□□□ 0.18
CLIP1-208ENST00000537004 THSD7AQ9UPZ6 1657 aa16.17■□□□□ 0.18
CLIP1-208ENST00000537004 DEFB132Q7Z7B7 95 aa16.17■□□□□ 0.18
CLIP1-208ENST00000537004 NSD3Q9BZ95 1437 aa16.17■□□□□ 0.18
CLIP1-208ENST00000537004 RRS1Q15050 365 aaKnown RBP16.16■□□□□ 0.18
CLIP1-208ENST00000537004 CCDC184Q52MB2 194 aa16.16■□□□□ 0.18
CLIP1-208ENST00000537004 THRAP3Q9Y2W1 955 aaKnown RBP16.16■□□□□ 0.18
CLIP1-208ENST00000537004 MAP3K19Q56UN5 1328 aa16.16■□□□□ 0.18
CLIP1-208ENST00000537004 MYOM1P52179 1685 aa16.16■□□□□ 0.18
CLIP1-208ENST00000537004 ERBB3P21860 1342 aa16.15■□□□□ 0.18
CLIP1-208ENST00000537004 PDE3BQ13370 1112 aa16.14■□□□□ 0.17
CLIP1-208ENST00000537004 ANKRD24Q8TF21 1146 aa16.14■□□□□ 0.17
CLIP1-208ENST00000537004 LTV1Q96GA3 475 aaPredicted RBP16.14■□□□□ 0.17
CLIP1-208ENST00000537004 USP54Q70EL1 1684 aa16.14■□□□□ 0.17
CLIP1-208ENST00000537004 BLMP54132 1417 aaPredicted RBP16.14■□□□□ 0.17
CLIP1-208ENST00000537004 CARD10Q9BWT7 1032 aa16.14■□□□□ 0.17
CLIP1-208ENST00000537004 NLRP2Q9NX02 1062 aa16.14■□□□□ 0.17
CLIP1-208ENST00000537004 RGPD5Q99666 1765 aa16.14■□□□□ 0.17
CLIP1-208ENST00000537004 CCDC125Q86Z20 511 aa16.13■□□□□ 0.17
CLIP1-208ENST00000537004 MRS2Q9HD23 443 aa16.13■□□□□ 0.17
CLIP1-208ENST00000537004 IP6K1Q92551 441 aa16.12■□□□□ 0.17
CLIP1-208ENST00000537004 PANK3Q9H999 370 aa16.12■□□□□ 0.17
CLIP1-208ENST00000537004 AMPHP49418 695 aa16.12■□□□□ 0.17
CLIP1-208ENST00000537004 TRIM37O94972 964 aa16.11■□□□□ 0.17
CLIP1-208ENST00000537004 HOXC9P31274 260 aa16.11■□□□□ 0.17
CLIP1-208ENST00000537004 SF3B2Q13435 895 aaKnown RBP16.11■□□□□ 0.17
CLIP1-208ENST00000537004 DDB1Q16531 1140 aa16.11■□□□□ 0.17
CLIP1-208ENST00000537004 LTN1O94822 1766 aa16.1■□□□□ 0.17
CLIP1-208ENST00000537004 CNGB1Q14028 1251 aaPredicted RBP16.1■□□□□ 0.17
CLIP1-208ENST00000537004 FAM196AQ6ZSG2 479 aa16.09■□□□□ 0.17
CLIP1-208ENST00000537004 CGNL1Q0VF96 1302 aa16.09■□□□□ 0.17
CLIP1-208ENST00000537004 TNNT2P45379 298 aaPredicted RBP16.08■□□□□ 0.16
CLIP1-208ENST00000537004 HNRNPUQ00839 825 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLIP1-208ENST00000537004 EMILIN1Q9Y6C2 1016 aa16.08■□□□□ 0.16
CLIP1-208ENST00000537004 ABCC6O95255 1503 aa16.08■□□□□ 0.16
CLIP1-208ENST00000537004 EN1Q05925 392 aaPredicted RBP16.07■□□□□ 0.16
CLIP1-208ENST00000537004 HSP90AB2PQ58FF8 381 aa16.07■□□□□ 0.16
CLIP1-208ENST00000537004 MARCH10Q8NA82 808 aaPredicted RBP16.07■□□□□ 0.16
CLIP1-208ENST00000537004 DISP2A7MBM2 1401 aa16.07■□□□□ 0.16
CLIP1-208ENST00000537004 PPM1GO15355 546 aaPredicted RBP16.06■□□□□ 0.16
CLIP1-208ENST00000537004 FAM9BQ8IZU0 186 aa16.06■□□□□ 0.16
CLIP1-208ENST00000537004 PTF1AQ7RTS3 328 aa16.06■□□□□ 0.16
CLIP1-208ENST00000537004 EXOC5O00471 708 aa16.05■□□□□ 0.16
CLIP1-208ENST00000537004 PER1O15534 1290 aaPredicted RBP16.05■□□□□ 0.16
CLIP1-208ENST00000537004 RALBP1Q15311 655 aa16.05■□□□□ 0.16
CLIP1-208ENST00000537004 IL2RBP14784 551 aa16.04■□□□□ 0.16
CLIP1-208ENST00000537004 BAG6P46379 1132 aa16.04■□□□□ 0.16
CLIP1-208ENST00000537004 USHBP1Q8N6Y0 703 aa16.04■□□□□ 0.16
CLIP1-208ENST00000537004 CDCA7Q9BWT1 371 aaPredicted RBP16.04■□□□□ 0.16
CLIP1-208ENST00000537004 PARP4Q9UKK3 1724 aaKnown RBP16.04■□□□□ 0.16
CLIP1-208ENST00000537004 LRRC37A3O60309 1634 aa16.04■□□□□ 0.16
CLIP1-208ENST00000537004 APBA3O96018 575 aa16.04■□□□□ 0.16
CLIP1-208ENST00000537004 NBPF6Q5VWK0 638 aa16.04■□□□□ 0.16
CLIP1-208ENST00000537004 NBPF4Q96M43 638 aa16.04■□□□□ 0.16
CLIP1-208ENST00000537004 KIF20BQ96Q89 1820 aa16.03■□□□□ 0.16
CLIP1-208ENST00000537004 PARD3Q8TEW0 1356 aa16.03■□□□□ 0.16
CLIP1-208ENST00000537004 OVOS2A0A0G2JMS6 1433 aa16.02■□□□□ 0.16
CLIP1-208ENST00000537004 RTL1A6NKG5 1358 aa16.02■□□□□ 0.16
CLIP1-208ENST00000537004 MYBBP1AQ9BQG0 1328 aaKnown RBP16.02■□□□□ 0.15
CLIP1-208ENST00000537004 EZH2Q15910 746 aaKnown RBP16.02■□□□□ 0.15
CLIP1-208ENST00000537004 POLKQ9UBT6 870 aa16.02■□□□□ 0.15
CLIP1-208ENST00000537004 FLT4P35916 1363 aa16.01■□□□□ 0.15
CLIP1-208ENST00000537004 KNSTRNQ9Y448 316 aa16.01■□□□□ 0.15
CLIP1-208ENST00000537004 PEAK1Q9H792 1746 aa16■□□□□ 0.15
CLIP1-208ENST00000537004 INSRP06213 1382 aa16■□□□□ 0.15
CLIP1-208ENST00000537004 TNS2Q63HR2 1409 aa15.99■□□□□ 0.15
CLIP1-208ENST00000537004 CAMKK2Q96RR4 588 aa15.99■□□□□ 0.15
CLIP1-208ENST00000537004 KCNQ2O43526 872 aa15.99■□□□□ 0.15
CLIP1-208ENST00000537004 DDX54Q8TDD1 881 aaKnown RBP15.99■□□□□ 0.15
CLIP1-208ENST00000537004 ACSBG1Q96GR2 724 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms