RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 WDR17Q8IZU2 1322 aa18.54■□□□□ 0.56
RTN3-207ENST00000536011 ARHGEF25Q86VW2 580 aa18.54■□□□□ 0.56
RTN3-207ENST00000536011 TMC1Q8TDI8 760 aa18.54■□□□□ 0.56
RTN3-207ENST00000536011 PUS7Q96PZ0 661 aaKnown RBP18.54■□□□□ 0.56
RTN3-207ENST00000536011 COL18A1P39060 1754 aa18.53■□□□□ 0.56
RTN3-207ENST00000536011 CDCA7Q9BWT1 371 aaPredicted RBP18.53■□□□□ 0.56
RTN3-207ENST00000536011 TERF2IPQ9NYB0 399 aa18.53■□□□□ 0.56
RTN3-207ENST00000536011 NFAT5O94916 1531 aa18.53■□□□□ 0.56
RTN3-207ENST00000536011 OVOS2A0A0G2JMS6 1433 aa18.52■□□□□ 0.56
RTN3-207ENST00000536011 OVOS2A0A0J9YW53 1432 aa18.52■□□□□ 0.56
RTN3-207ENST00000536011 OVOS2Q6IE36 1432 aa18.52■□□□□ 0.56
RTN3-207ENST00000536011 SOX12O15370 315 aa18.52■□□□□ 0.56
RTN3-207ENST00000536011 APBA3O96018 575 aa18.52■□□□□ 0.56
RTN3-207ENST00000536011 USP31Q70CQ4 1352 aa18.52■□□□□ 0.55
RTN3-207ENST00000536011 NINLQ9Y2I6 1382 aa18.52■□□□□ 0.55
RTN3-207ENST00000536011 LRP5O75197 1615 aa18.52■□□□□ 0.55
RTN3-207ENST00000536011 USP54Q70EL1 1684 aa18.51■□□□□ 0.55
RTN3-207ENST00000536011 EDC4Q6P2E9 1401 aaKnown RBP18.51■□□□□ 0.55
RTN3-207ENST00000536011 LRRC37A3O60309 1634 aa18.5■□□□□ 0.55
RTN3-207ENST00000536011 CSB-PGBD3P0DP91 1061 aa18.5■□□□□ 0.55
RTN3-207ENST00000536011 DDB1Q16531 1140 aa18.5■□□□□ 0.55
RTN3-207ENST00000536011 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.5■□□□□ 0.55
RTN3-207ENST00000536011 CD163L1Q9NR16 1453 aa18.5■□□□□ 0.55
RTN3-207ENST00000536011 PSDA5PKW4 1024 aaPredicted RBP18.49■□□□□ 0.55
RTN3-207ENST00000536011 EZH2Q15910 746 aaKnown RBP18.49■□□□□ 0.55
RTN3-207ENST00000536011 CAMKK2Q96RR4 588 aa18.49■□□□□ 0.55
RTN3-207ENST00000536011 AXIN2Q9Y2T1 843 aa18.49■□□□□ 0.55
RTN3-207ENST00000536011 WNK3Q9BYP7 1800 aa18.49■□□□□ 0.55
RTN3-207ENST00000536011 CARD10Q9BWT7 1032 aa18.48■□□□□ 0.55
RTN3-207ENST00000536011 CCDC7Q96M83 1385 aa18.47■□□□□ 0.55
RTN3-207ENST00000536011 SLC12A5Q9H2X9 1139 aa18.47■□□□□ 0.55
RTN3-207ENST00000536011 A0A1W2PP64 1363 aa18.46■□□□□ 0.55
RTN3-207ENST00000536011 R3HDM1Q15032 1099 aaKnown RBP18.46■□□□□ 0.55
RTN3-207ENST00000536011 NME9Q86XW9 330 aa18.46■□□□□ 0.55
RTN3-207ENST00000536011 RGPD5Q99666 1765 aa18.45■□□□□ 0.54
RTN3-207ENST00000536011 RREB1Q92766 1687 aa18.45■□□□□ 0.54
RTN3-207ENST00000536011 ST20-MTHFSA0A0A6YYL1 179 aa18.45■□□□□ 0.54
RTN3-207ENST00000536011 PEAK1Q9H792 1746 aa18.45■□□□□ 0.54
RTN3-207ENST00000536011 NBPF14Q5TI25 921 aa18.44■□□□□ 0.54
RTN3-207ENST00000536011 TESK2Q96S53 571 aa18.44■□□□□ 0.54
RTN3-207ENST00000536011 BCL9O00512 1426 aa18.43■□□□□ 0.54
RTN3-207ENST00000536011 RGPD3A6NKT7 1758 aaPredicted RBP18.42■□□□□ 0.54
RTN3-207ENST00000536011 LTN1O94822 1766 aa18.42■□□□□ 0.54
RTN3-207ENST00000536011 RGPD4Q7Z3J3 1758 aa18.42■□□□□ 0.54
RTN3-207ENST00000536011 ERBB3P21860 1342 aa18.42■□□□□ 0.54
RTN3-207ENST00000536011 NUP188Q5SRE5 1749 aa18.41■□□□□ 0.54
RTN3-207ENST00000536011 USP47Q96K76 1375 aa18.41■□□□□ 0.54
RTN3-207ENST00000536011 TNS2Q63HR2 1409 aa18.4■□□□□ 0.54
RTN3-207ENST00000536011 EXOC5O00471 708 aa18.4■□□□□ 0.54
RTN3-207ENST00000536011 TMF1P82094 1093 aa18.4■□□□□ 0.54
RTN3-207ENST00000536011 BCL11BQ9C0K0 894 aaPredicted RBP18.4■□□□□ 0.54
RTN3-207ENST00000536011 SBF2Q86WG5 1849 aa18.39■□□□□ 0.54
RTN3-207ENST00000536011 CDCA8Q53HL2 280 aa18.39■□□□□ 0.53
RTN3-207ENST00000536011 NLRP2Q9NX02 1062 aa18.39■□□□□ 0.53
RTN3-207ENST00000536011 TIMELESSQ9UNS1 1208 aa18.39■□□□□ 0.53
RTN3-207ENST00000536011 ANKRD36BQ8N2N9 1353 aa18.39■□□□□ 0.53
RTN3-207ENST00000536011 PLSCR1O15162 318 aa18.38■□□□□ 0.53
RTN3-207ENST00000536011 MARCH10Q8NA82 808 aaPredicted RBP18.38■□□□□ 0.53
RTN3-207ENST00000536011 COG3Q96JB2 828 aa18.38■□□□□ 0.53
RTN3-207ENST00000536011 ANKRD24Q8TF21 1146 aa18.37■□□□□ 0.53
RTN3-207ENST00000536011 CLSPNQ9HAW4 1339 aa18.37■□□□□ 0.53
RTN3-207ENST00000536011 FAM208AQ9UK61 1670 aaKnown RBP18.36■□□□□ 0.53
RTN3-207ENST00000536011 IL2RBP14784 551 aa18.35■□□□□ 0.53
RTN3-207ENST00000536011 IP6K1Q92551 441 aa18.34■□□□□ 0.53
RTN3-207ENST00000536011 RTL1A6NKG5 1358 aa18.31■□□□□ 0.52
RTN3-207ENST00000536011 AMPHP49418 695 aa18.3■□□□□ 0.52
RTN3-207ENST00000536011 NHSQ6T4R5 1651 aa18.3■□□□□ 0.52
RTN3-207ENST00000536011 MAP3K19Q56UN5 1328 aa18.29■□□□□ 0.52
RTN3-207ENST00000536011 SPON1Q9HCB6 807 aa18.28■□□□□ 0.52
RTN3-207ENST00000536011 SMG6Q86US8 1419 aaKnown RBP18.27■□□□□ 0.52
RTN3-207ENST00000536011 HOXC9P31274 260 aa18.27■□□□□ 0.52
RTN3-207ENST00000536011 PTF1AQ7RTS3 328 aa18.27■□□□□ 0.52
RTN3-207ENST00000536011 LTV1Q96GA3 475 aaPredicted RBP18.27■□□□□ 0.52
RTN3-207ENST00000536011 PCGF6Q9BYE7 350 aa18.27■□□□□ 0.52
RTN3-207ENST00000536011 PPP4R3CPQ6ZMV5 832 aa18.26■□□□□ 0.51
RTN3-207ENST00000536011 KIF20BQ96Q89 1820 aa18.26■□□□□ 0.51
RTN3-207ENST00000536011 FYB1O15117 783 aa18.25■□□□□ 0.51
RTN3-207ENST00000536011 TXNRD1Q16881 649 aa18.25■□□□□ 0.51
RTN3-207ENST00000536011 PPP1R1BQ9UD71 204 aaPredicted RBP18.25■□□□□ 0.51
RTN3-207ENST00000536011 KCNQ2O43526 872 aa18.24■□□□□ 0.51
RTN3-207ENST00000536011 GGNBP2Q9H3C7 697 aa18.24■□□□□ 0.51
RTN3-207ENST00000536011 STK32BQ9NY57 414 aa18.24■□□□□ 0.51
RTN3-207ENST00000536011 KIF24Q5T7B8 1368 aa18.23■□□□□ 0.51
RTN3-207ENST00000536011 ACSBG1Q96GR2 724 aa18.23■□□□□ 0.51
RTN3-207ENST00000536011 ANO8Q9HCE9 1232 aaPredicted RBP18.23■□□□□ 0.51
RTN3-207ENST00000536011 PROM2Q8N271 834 aa18.22■□□□□ 0.51
RTN3-207ENST00000536011 MYOM1P52179 1685 aa18.22■□□□□ 0.51
RTN3-207ENST00000536011 RRS1Q15050 365 aaKnown RBP18.21■□□□□ 0.51
RTN3-207ENST00000536011 DDX54Q8TDD1 881 aaKnown RBP18.21■□□□□ 0.51
RTN3-207ENST00000536011 CASZ1Q86V15 1759 aa18.21■□□□□ 0.51
RTN3-207ENST00000536011 BTAF1O14981 1849 aa18.21■□□□□ 0.51
RTN3-207ENST00000536011 CGNL1Q0VF96 1302 aa18.21■□□□□ 0.51
RTN3-207ENST00000536011 FLT4P35916 1363 aa18.2■□□□□ 0.5
RTN3-207ENST00000536011 NSD3Q9BZ95 1437 aa18.2■□□□□ 0.5
RTN3-207ENST00000536011 SLC15A2Q16348 729 aa18.19■□□□□ 0.5
RTN3-207ENST00000536011 INSRP06213 1382 aa18.18■□□□□ 0.5
RTN3-207ENST00000536011 FBLN1P23142 703 aa18.18■□□□□ 0.5
RTN3-207ENST00000536011 ZCRB1Q8TBF4 217 aaKnown RBP18.18■□□□□ 0.5
RTN3-207ENST00000536011 RAPGEF4Q8WZA2 1011 aa18.18■□□□□ 0.5
RTN3-207ENST00000536011 KAT6BQ8WYB5 2073 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms