RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.66■□□□□ 0.58
CLSTN3-205ENST00000535452 LMO7Q8WWI1 1683 aa18.66■□□□□ 0.58
CLSTN3-205ENST00000535452 CPSF1Q10570 1443 aaKnown RBP18.66■□□□□ 0.58
CLSTN3-205ENST00000535452 DCAF8L1A6NGE4 600 aa18.64■□□□□ 0.57
CLSTN3-205ENST00000535452 CAMKK2Q96RR4 588 aa18.64■□□□□ 0.57
CLSTN3-205ENST00000535452 EXOC5O00471 708 aa18.63■□□□□ 0.57
CLSTN3-205ENST00000535452 ARHGEF25Q86VW2 580 aa18.63■□□□□ 0.57
CLSTN3-205ENST00000535452 PPP1R1BQ9UD71 204 aaPredicted RBP18.62■□□□□ 0.57
CLSTN3-205ENST00000535452 CCDC7Q96M83 1385 aa18.62■□□□□ 0.57
CLSTN3-205ENST00000535452 LRP5O75197 1615 aa18.62■□□□□ 0.57
CLSTN3-205ENST00000535452 TNS1Q9HBL0 1735 aaKnown RBP18.61■□□□□ 0.57
CLSTN3-205ENST00000535452 PIK3C2AO00443 1686 aa18.61■□□□□ 0.57
CLSTN3-205ENST00000535452 CARD10Q9BWT7 1032 aa18.61■□□□□ 0.57
CLSTN3-205ENST00000535452 TRIM26Q12899 539 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-205ENST00000535452 PARP4Q9UKK3 1724 aaKnown RBP18.6■□□□□ 0.57
CLSTN3-205ENST00000535452 PUS7Q96PZ0 661 aaKnown RBP18.59■□□□□ 0.57
CLSTN3-205ENST00000535452 NLRP2Q9NX02 1062 aa18.59■□□□□ 0.57
CLSTN3-205ENST00000535452 AKAP12Q02952 1782 aa18.58■□□□□ 0.57
CLSTN3-205ENST00000535452 NINLQ9Y2I6 1382 aa18.58■□□□□ 0.57
CLSTN3-205ENST00000535452 BCL11BQ9C0K0 894 aaPredicted RBP18.58■□□□□ 0.56
CLSTN3-205ENST00000535452 AXIN2Q9Y2T1 843 aa18.57■□□□□ 0.56
CLSTN3-205ENST00000535452 ABCC6O95255 1503 aa18.56■□□□□ 0.56
CLSTN3-205ENST00000535452 PLSCR1O15162 318 aa18.56■□□□□ 0.56
CLSTN3-205ENST00000535452 EDC4Q6P2E9 1401 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-205ENST00000535452 USP31Q70CQ4 1352 aa18.55■□□□□ 0.56
CLSTN3-205ENST00000535452 CDCA8Q53HL2 280 aa18.55■□□□□ 0.56
CLSTN3-205ENST00000535452 NME9Q86XW9 330 aa18.55■□□□□ 0.56
CLSTN3-205ENST00000535452 COG3Q96JB2 828 aa18.55■□□□□ 0.56
CLSTN3-205ENST00000535452 SLC12A5Q9H2X9 1139 aa18.55■□□□□ 0.56
CLSTN3-205ENST00000535452 SPON1Q9HCB6 807 aa18.54■□□□□ 0.56
CLSTN3-205ENST00000535452 IL2RBP14784 551 aa18.53■□□□□ 0.56
CLSTN3-205ENST00000535452 TMF1P82094 1093 aa18.53■□□□□ 0.56
CLSTN3-205ENST00000535452 LRRC37A3O60309 1634 aa18.52■□□□□ 0.56
CLSTN3-205ENST00000535452 MON2Q7Z3U7 1717 aa18.52■□□□□ 0.56
CLSTN3-205ENST00000535452 STK32BQ9NY57 414 aa18.52■□□□□ 0.56
CLSTN3-205ENST00000535452 ST20-MTHFSA0A0A6YYL1 179 aa18.51■□□□□ 0.55
CLSTN3-205ENST00000535452 ANKRD24Q8TF21 1146 aa18.51■□□□□ 0.55
CLSTN3-205ENST00000535452 ERBB3P21860 1342 aa18.5■□□□□ 0.55
CLSTN3-205ENST00000535452 AMPHP49418 695 aa18.5■□□□□ 0.55
CLSTN3-205ENST00000535452 MARCH10Q8NA82 808 aaPredicted RBP18.5■□□□□ 0.55
CLSTN3-205ENST00000535452 A0A1W2PP64 1363 aa18.5■□□□□ 0.55
CLSTN3-205ENST00000535452 NFAT5O94916 1531 aa18.49■□□□□ 0.55
CLSTN3-205ENST00000535452 TNS2Q63HR2 1409 aa18.49■□□□□ 0.55
CLSTN3-205ENST00000535452 COL18A1P39060 1754 aa18.48■□□□□ 0.55
CLSTN3-205ENST00000535452 KCNQ2O43526 872 aa18.48■□□□□ 0.55
CLSTN3-205ENST00000535452 BCL9O00512 1426 aa18.48■□□□□ 0.55
CLSTN3-205ENST00000535452 RREB1Q92766 1687 aa18.47■□□□□ 0.55
CLSTN3-205ENST00000535452 LTV1Q96GA3 475 aaPredicted RBP18.47■□□□□ 0.55
CLSTN3-205ENST00000535452 SRCAPQ6ZRS2 3230 aa18.46■□□□□ 0.55
CLSTN3-205ENST00000535452 NUP188Q5SRE5 1749 aa18.46■□□□□ 0.55
CLSTN3-205ENST00000535452 WNK3Q9BYP7 1800 aa18.45■□□□□ 0.54
CLSTN3-205ENST00000535452 TXNRD1Q16881 649 aa18.45■□□□□ 0.54
CLSTN3-205ENST00000535452 IP6K1Q92551 441 aa18.45■□□□□ 0.54
CLSTN3-205ENST00000535452 SMG6Q86US8 1419 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-205ENST00000535452 RGPD3A6NKT7 1758 aaPredicted RBP18.45■□□□□ 0.54
CLSTN3-205ENST00000535452 RGPD4Q7Z3J3 1758 aa18.45■□□□□ 0.54
CLSTN3-205ENST00000535452 CD163L1Q9NR16 1453 aa18.44■□□□□ 0.54
CLSTN3-205ENST00000535452 RGPD5Q99666 1765 aa18.43■□□□□ 0.54
CLSTN3-205ENST00000535452 ACSBG1Q96GR2 724 aa18.43■□□□□ 0.54
CLSTN3-205ENST00000535452 PEAK1Q9H792 1746 aa18.43■□□□□ 0.54
CLSTN3-205ENST00000535452 ANKRD36BQ8N2N9 1353 aa18.42■□□□□ 0.54
CLSTN3-205ENST00000535452 USP47Q96K76 1375 aa18.42■□□□□ 0.54
CLSTN3-205ENST00000535452 LTN1O94822 1766 aa18.42■□□□□ 0.54
CLSTN3-205ENST00000535452 HMGB2P26583 209 aaKnown RBP18.42■□□□□ 0.54
CLSTN3-205ENST00000535452 DDX54Q8TDD1 881 aaKnown RBP18.42■□□□□ 0.54
CLSTN3-205ENST00000535452 USP54Q70EL1 1684 aa18.41■□□□□ 0.54
CLSTN3-205ENST00000535452 TESK2Q96S53 571 aa18.41■□□□□ 0.54
CLSTN3-205ENST00000535452 TIMELESSQ9UNS1 1208 aa18.41■□□□□ 0.54
CLSTN3-205ENST00000535452 SYTL4Q96C24 671 aaPredicted RBP18.4■□□□□ 0.54
CLSTN3-205ENST00000535452 SLC15A2Q16348 729 aa18.39■□□□□ 0.53
CLSTN3-205ENST00000535452 SBF2Q86WG5 1849 aa18.39■□□□□ 0.53
CLSTN3-205ENST00000535452 HOXC9P31274 260 aa18.38■□□□□ 0.53
CLSTN3-205ENST00000535452 RAPGEF4Q8WZA2 1011 aa18.38■□□□□ 0.53
CLSTN3-205ENST00000535452 RTL1A6NKG5 1358 aa18.38■□□□□ 0.53
CLSTN3-205ENST00000535452 FAM208AQ9UK61 1670 aaKnown RBP18.38■□□□□ 0.53
CLSTN3-205ENST00000535452 ZBTB7AO95365 584 aa18.37■□□□□ 0.53
CLSTN3-205ENST00000535452 MAP3K19Q56UN5 1328 aa18.37■□□□□ 0.53
CLSTN3-205ENST00000535452 PCGF6Q9BYE7 350 aa18.36■□□□□ 0.53
CLSTN3-205ENST00000535452 CGNL1Q0VF96 1302 aa18.35■□□□□ 0.53
CLSTN3-205ENST00000535452 PTF1AQ7RTS3 328 aa18.35■□□□□ 0.53
CLSTN3-205ENST00000535452 MTFR1LQ9H019 292 aa18.35■□□□□ 0.53
CLSTN3-205ENST00000535452 GGNBP2Q9H3C7 697 aa18.35■□□□□ 0.53
CLSTN3-205ENST00000535452 ANO8Q9HCE9 1232 aaPredicted RBP18.35■□□□□ 0.53
CLSTN3-205ENST00000535452 CLSPNQ9HAW4 1339 aa18.34■□□□□ 0.53
CLSTN3-205ENST00000535452 YY1P25490 414 aa18.34■□□□□ 0.53
CLSTN3-205ENST00000535452 SLC27A3Q5K4L6 730 aa18.34■□□□□ 0.53
CLSTN3-205ENST00000535452 ZCRB1Q8TBF4 217 aaKnown RBP18.34■□□□□ 0.53
CLSTN3-205ENST00000535452 POLR3GLQ9BT43 218 aa18.34■□□□□ 0.53
CLSTN3-205ENST00000535452 NHSQ6T4R5 1651 aa18.34■□□□□ 0.53
CLSTN3-205ENST00000535452 TATP17735 454 aaPredicted RBP18.33■□□□□ 0.52
CLSTN3-205ENST00000535452 PROM2Q8N271 834 aa18.33■□□□□ 0.52
CLSTN3-205ENST00000535452 ATF5Q9Y2D1 282 aaPredicted RBP18.33■□□□□ 0.52
CLSTN3-205ENST00000535452 POLD1P28340 1107 aa18.32■□□□□ 0.52
CLSTN3-205ENST00000535452 RRS1Q15050 365 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-205ENST00000535452 FYB1O15117 783 aa18.31■□□□□ 0.52
CLSTN3-205ENST00000535452 KAT6BQ8WYB5 2073 aa18.3■□□□□ 0.52
CLSTN3-205ENST00000535452 FLT4P35916 1363 aa18.3■□□□□ 0.52
CLSTN3-205ENST00000535452 KIF24Q5T7B8 1368 aa18.3■□□□□ 0.52
CLSTN3-205ENST00000535452 PPM1GO15355 546 aaPredicted RBP18.29■□□□□ 0.52
CLSTN3-205ENST00000535452 TFCP2L1Q9NZI6 479 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms