RNA–Protein interactions for RNA: ENST00000535302.6

SPG11-203, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 7,288 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-203ENST00000535302 NUP133Q8WUM0 1156 aa15.04■□□□□ -0
SPG11-203ENST00000535302 GNAI3P08754 354 aa15.04■□□□□ -0
SPG11-203ENST00000535302 XBP1P17861 261 aa15.04■□□□□ -0
SPG11-203ENST00000535302 ZNF530Q6P9A1 599 aaPredicted RBP15.04■□□□□ -0
SPG11-203ENST00000535302 CFTRP13569 1480 aa15.04■□□□□ -0
SPG11-203ENST00000535302 SART3Q15020 963 aaKnown RBP15.03■□□□□ -0
SPG11-203ENST00000535302 CCDC158Q5M9N0 1113 aa15.03■□□□□ -0
SPG11-203ENST00000535302 WDR70Q9NW82 654 aa15.03■□□□□ -0
SPG11-203ENST00000535302 FANCIQ9NVI1 1328 aa15.03■□□□□ -0
SPG11-203ENST00000535302 SMG6Q86US8 1419 aaKnown RBP15.03■□□□□ -0
SPG11-203ENST00000535302 RAPGEF3O95398 923 aa15.02■□□□□ -0
SPG11-203ENST00000535302 TAF3Q5VWG9 929 aa15.02□□□□□ -0.01
SPG11-203ENST00000535302 NBPF8Q3BBV2 869 aa15.02□□□□□ -0.01
SPG11-203ENST00000535302 ACBD3Q9H3P7 528 aa15.02□□□□□ -0.01
SPG11-203ENST00000535302 SSR1P43307 286 aaKnown RBP15.01□□□□□ -0.01
SPG11-203ENST00000535302 ZC3H6P61129 1189 aaKnown RBP15.01□□□□□ -0.01
SPG11-203ENST00000535302 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.01□□□□□ -0.01
SPG11-203ENST00000535302 IL1RAPL2Q9NP60 686 aa15.01□□□□□ -0.01
SPG11-203ENST00000535302 TRAK2O60296 914 aa15.01□□□□□ -0.01
SPG11-203ENST00000535302 SSBP05455 408 aaKnown RBP eCLIP15.01□□□□□ -0.01
SPG11-203ENST00000535302 CT47B1P0C2W7 299 aaPredicted RBP15□□□□□ -0.01
SPG11-203ENST00000535302 PSMD1Q99460 953 aa15□□□□□ -0.01
SPG11-203ENST00000535302 PRG4Q92954 1404 aaPredicted RBP15□□□□□ -0.01
SPG11-203ENST00000535302 BRD4O60885 1362 aaPredicted RBP15□□□□□ -0.01
SPG11-203ENST00000535302 CCDC184Q52MB2 194 aa15□□□□□ -0.01
SPG11-203ENST00000535302 NAT10Q9H0A0 1025 aaKnown RBP15□□□□□ -0.01
SPG11-203ENST00000535302 DCAF8L1A6NGE4 600 aa15□□□□□ -0.01
SPG11-203ENST00000535302 AACSQ86V21 672 aa15□□□□□ -0.01
SPG11-203ENST00000535302 DEF6Q9H4E7 631 aa15□□□□□ -0.01
SPG11-203ENST00000535302 SCAPERQ9BY12 1400 aa14.99□□□□□ -0.01
SPG11-203ENST00000535302 SERPINC1P01008 464 aa14.99□□□□□ -0.01
SPG11-203ENST00000535302 FYCO1Q9BQS8 1478 aa14.99□□□□□ -0.01
SPG11-203ENST00000535302 THUMPD2Q9BTF0 503 aaKnown RBP14.99□□□□□ -0.01
SPG11-203ENST00000535302 TMX1Q9H3N1 280 aa14.99□□□□□ -0.01
SPG11-203ENST00000535302 RRBP1Q9P2E9 1410 aaKnown RBP14.99□□□□□ -0.01
SPG11-203ENST00000535302 STK38Q15208 465 aa14.99□□□□□ -0.01
SPG11-203ENST00000535302 BTBD11A6QL63 1104 aa14.99□□□□□ -0.01
SPG11-203ENST00000535302 USHBP1Q8N6Y0 703 aa14.99□□□□□ -0.01
SPG11-203ENST00000535302 CWC27Q6UX04 472 aaKnown RBP14.99□□□□□ -0.01
SPG11-203ENST00000535302 LRRCC1Q9C099 1032 aa14.99□□□□□ -0.01
SPG11-203ENST00000535302 DCTN1Q14203 1278 aa14.98□□□□□ -0.01
SPG11-203ENST00000535302 NUTM1Q86Y26 1132 aa14.98□□□□□ -0.01
SPG11-203ENST00000535302 KINO60870 393 aaKnown RBP14.98□□□□□ -0.01
SPG11-203ENST00000535302 ERICH4A6NGS2 130 aa14.98□□□□□ -0.01
SPG11-203ENST00000535302 SKAP1Q86WV1 359 aa14.98□□□□□ -0.01
SPG11-203ENST00000535302 TSPY26PQ9H489 355 aa14.98□□□□□ -0.01
SPG11-203ENST00000535302 BRPF3Q9ULD4 1205 aa14.98□□□□□ -0.01
SPG11-203ENST00000535302 ZSCAN29Q8IWY8 852 aaPredicted RBP14.98□□□□□ -0.01
SPG11-203ENST00000535302 TRMT1LQ7Z2T5 733 aaKnown RBP14.97□□□□□ -0.01
SPG11-203ENST00000535302 CCDC69A6NI79 296 aa14.97□□□□□ -0.01
SPG11-203ENST00000535302 SLC3A2P08195 630 aaKnown RBP14.97□□□□□ -0.01
SPG11-203ENST00000535302 MPHOSPH8Q99549 860 aa14.96□□□□□ -0.01
SPG11-203ENST00000535302 USP5P45974 858 aa14.96□□□□□ -0.01
SPG11-203ENST00000535302 SRCIN1Q9C0H9 1055 aa14.96□□□□□ -0.01
SPG11-203ENST00000535302 CCDC39Q9UFE4 941 aa14.96□□□□□ -0.01
SPG11-203ENST00000535302 FILIP1LQ4L180 1135 aa14.96□□□□□ -0.02
SPG11-203ENST00000535302 CCDC57Q2TAC2 916 aa14.95□□□□□ -0.02
SPG11-203ENST00000535302 CCDC181Q5TID7 509 aa14.95□□□□□ -0.02
SPG11-203ENST00000535302 LRRFIP2Q9Y608 721 aaKnown RBP14.95□□□□□ -0.02
SPG11-203ENST00000535302 SRGAP3O43295 1099 aa14.95□□□□□ -0.02
SPG11-203ENST00000535302 MCM10Q7L590 875 aa14.95□□□□□ -0.02
SPG11-203ENST00000535302 RTEL1-TNFRSF6BF6WH68 1400 aa14.95□□□□□ -0.02
SPG11-203ENST00000535302 CYP46A1Q9Y6A2 500 aa14.95□□□□□ -0.02
SPG11-203ENST00000535302 MPHOSPH10O00566 681 aaKnown RBP14.95□□□□□ -0.02
SPG11-203ENST00000535302 SMARCA5O60264 1052 aaPredicted RBP14.95□□□□□ -0.02
SPG11-203ENST00000535302 SMARCE1Q969G3 411 aa14.95□□□□□ -0.02
SPG11-203ENST00000535302 GNL3LQ9NVN8 582 aaKnown RBP14.95□□□□□ -0.02
SPG11-203ENST00000535302 NEBLO76041 1014 aa14.95□□□□□ -0.02
SPG11-203ENST00000535302 ERC1Q8IUD2 1116 aa14.95□□□□□ -0.02
SPG11-203ENST00000535302 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.95□□□□□ -0.024e-6■■□□□ 12.1
SPG11-203ENST00000535302 SPG7Q9UQ90 795 aa14.94□□□□□ -0.02
SPG11-203ENST00000535302 ME1P48163 572 aa14.94□□□□□ -0.02
SPG11-203ENST00000535302 RAI14Q9P0K7 980 aa14.94□□□□□ -0.02
SPG11-203ENST00000535302 MYO6Q9UM54 1294 aa14.94□□□□□ -0.02
SPG11-203ENST00000535302 ERBINQ96RT1 1412 aa14.94□□□□□ -0.02
SPG11-203ENST00000535302 LEKR1Q6ZMV7 388 aa14.94□□□□□ -0.02
SPG11-203ENST00000535302 WAPLQ7Z5K2 1190 aa14.94□□□□□ -0.02
SPG11-203ENST00000535302 PRDM11Q9NQV5 511 aa14.94□□□□□ -0.02
SPG11-203ENST00000535302 DNA2P51530 1060 aa14.93□□□□□ -0.02
SPG11-203ENST00000535302 SF3B2Q13435 895 aaKnown RBP14.93□□□□□ -0.02
SPG11-203ENST00000535302 NESP48681 1621 aa14.93□□□□□ -0.02
SPG11-203ENST00000535302 CASKIN1Q8WXD9 1431 aa14.93□□□□□ -0.02
SPG11-203ENST00000535302 GCC1Q96CN9 775 aa14.93□□□□□ -0.02
SPG11-203ENST00000535302 PTCD1O75127 700 aaKnown RBP14.93□□□□□ -0.02
SPG11-203ENST00000535302 DHX8Q14562 1220 aaKnown RBP14.93□□□□□ -0.02
SPG11-203ENST00000535302 TXLNAP40222 546 aa14.92□□□□□ -0.02
SPG11-203ENST00000535302 C9orf84Q5VXU9 1444 aa14.92□□□□□ -0.02
SPG11-203ENST00000535302 ZNF396Q96N95 335 aaPredicted RBP14.92□□□□□ -0.02
SPG11-203ENST00000535302 DDX11Q96FC9 970 aa14.92□□□□□ -0.02
SPG11-203ENST00000535302 JAKMIP1Q96N16 626 aaKnown RBP14.92□□□□□ -0.02
SPG11-203ENST00000535302 HIP1O00291 1037 aa14.92□□□□□ -0.02
SPG11-203ENST00000535302 TDO2P48775 406 aa14.92□□□□□ -0.02
SPG11-203ENST00000535302 IL27Q8NEV9 243 aa14.92□□□□□ -0.02
SPG11-203ENST00000535302 CCT4P50991 539 aaKnown RBP14.91□□□□□ -0.02
SPG11-203ENST00000535302 IDH1O75874 414 aaKnown RBP14.91□□□□□ -0.02
SPG11-203ENST00000535302 SYNJ2O15056 1496 aa14.91□□□□□ -0.02
SPG11-203ENST00000535302 MRE11P49959 708 aa14.91□□□□□ -0.02
SPG11-203ENST00000535302 RABEP1Q15276 862 aa14.91□□□□□ -0.02
SPG11-203ENST00000535302 CHD1LQ86WJ1 897 aa14.91□□□□□ -0.02
SPG11-203ENST00000535302 THEMISQ8N1K5 641 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms