RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 ZNF692Q9BU19 519 aaPredicted RBP7.16□□□□□ -1.26
USH1C-210ENST00000534556 CARD14Q9BXL6 1004 aa7.16□□□□□ -1.26
USH1C-210ENST00000534556 SPATA31A1Q5TZJ5 1347 aa7.16□□□□□ -1.26
USH1C-210ENST00000534556 RGPD1P0DJD0 1748 aa7.15□□□□□ -1.26
USH1C-210ENST00000534556 SOX12O15370 315 aa7.15□□□□□ -1.26
USH1C-210ENST00000534556 HSPA5P11021 654 aaKnown RBP7.15□□□□□ -1.26
USH1C-210ENST00000534556 STRN4Q9NRL3 753 aa7.15□□□□□ -1.26
USH1C-210ENST00000534556 TTC21AQ8NDW8 1320 aa7.15□□□□□ -1.26
USH1C-210ENST00000534556 AATKQ6ZMQ8 1374 aa7.15□□□□□ -1.26
USH1C-210ENST00000534556 ZBTB7CA1YPR0 619 aa7.14□□□□□ -1.27
USH1C-210ENST00000534556 ANKRD36BQ8N2N9 1353 aa7.14□□□□□ -1.27
USH1C-210ENST00000534556 CCDC9Q9Y3X0 531 aaKnown RBP7.14□□□□□ -1.27
USH1C-210ENST00000534556 RREB1Q92766 1687 aa7.13□□□□□ -1.27
USH1C-210ENST00000534556 ABCC6O95255 1503 aa7.13□□□□□ -1.27
USH1C-210ENST00000534556 USP35Q9P2H5 1018 aa7.13□□□□□ -1.27
USH1C-210ENST00000534556 DISP2A7MBM2 1401 aa7.12□□□□□ -1.27
USH1C-210ENST00000534556 FYB1O15117 783 aa7.12□□□□□ -1.27
USH1C-210ENST00000534556 TMF1P82094 1093 aa7.12□□□□□ -1.27
USH1C-210ENST00000534556 HDGFL2Q7Z4V5 671 aaPredicted RBP7.12□□□□□ -1.27
USH1C-210ENST00000534556 VIRMAQ69YN4 1812 aaKnown RBP7.12□□□□□ -1.27
USH1C-210ENST00000534556 NUP188Q5SRE5 1749 aa7.12□□□□□ -1.27
USH1C-210ENST00000534556 CRB1P82279 1406 aa7.11□□□□□ -1.27
USH1C-210ENST00000534556 NINLQ9Y2I6 1382 aa7.11□□□□□ -1.27
USH1C-210ENST00000534556 PTF1AQ7RTS3 328 aa7.11□□□□□ -1.27
USH1C-210ENST00000534556 KRT27Q7Z3Y8 459 aa7.11□□□□□ -1.27
USH1C-210ENST00000534556 DEFB132Q7Z7B7 95 aa7.11□□□□□ -1.27
USH1C-210ENST00000534556 GGNBP2Q9H3C7 697 aa7.11□□□□□ -1.27
USH1C-210ENST00000534556 TERF2IPQ9NYB0 399 aa7.11□□□□□ -1.27
USH1C-210ENST00000534556 BTAF1O14981 1849 aa7.11□□□□□ -1.27
USH1C-210ENST00000534556 NSD3Q9BZ95 1437 aa7.1□□□□□ -1.27
USH1C-210ENST00000534556 WDR17Q8IZU2 1322 aa7.1□□□□□ -1.27
USH1C-210ENST00000534556 EVA1CP58658 441 aa7.1□□□□□ -1.27
USH1C-210ENST00000534556 BARGINQ6ZT62 677 aa7.1□□□□□ -1.27
USH1C-210ENST00000534556 ITGB4P16144 1822 aa7.1□□□□□ -1.27
USH1C-210ENST00000534556 BLMP54132 1417 aaPredicted RBP7.1□□□□□ -1.27
USH1C-210ENST00000534556 MAP3K19Q56UN5 1328 aa7.09□□□□□ -1.27
USH1C-210ENST00000534556 EIF4G2P78344 907 aaKnown RBP eCLIP7.09□□□□□ -1.27
USH1C-210ENST00000534556 RRS1Q15050 365 aaKnown RBP7.09□□□□□ -1.27
USH1C-210ENST00000534556 TCP11L2Q8N4U5 519 aa7.09□□□□□ -1.27
USH1C-210ENST00000534556 KCNH5Q8NCM2 988 aa7.09□□□□□ -1.27
USH1C-210ENST00000534556 DOT1LQ8TEK3 1739 aa7.09□□□□□ -1.27
USH1C-210ENST00000534556 NHSQ6T4R5 1651 aa7.09□□□□□ -1.27
USH1C-210ENST00000534556 RGPD3A6NKT7 1758 aaPredicted RBP7.08□□□□□ -1.28
USH1C-210ENST00000534556 RGPD4Q7Z3J3 1758 aa7.08□□□□□ -1.28
USH1C-210ENST00000534556 ERBB3P21860 1342 aa7.08□□□□□ -1.28
USH1C-210ENST00000534556 TOGARAM1Q9Y4F4 1720 aa7.08□□□□□ -1.28
USH1C-210ENST00000534556 A0A0G2JS52 829 aa7.08□□□□□ -1.28
USH1C-210ENST00000534556 MYT1Q01538 1121 aa7.08□□□□□ -1.28
USH1C-210ENST00000534556 MARCH10Q8NA82 808 aaPredicted RBP7.08□□□□□ -1.28
USH1C-210ENST00000534556 ANKRD24Q8TF21 1146 aa7.08□□□□□ -1.28
USH1C-210ENST00000534556 IP6K1Q92551 441 aa7.08□□□□□ -1.28
USH1C-210ENST00000534556 CARD10Q9BWT7 1032 aa7.08□□□□□ -1.28
USH1C-210ENST00000534556 TUBGCP6Q96RT7 1819 aa7.08□□□□□ -1.28
USH1C-210ENST00000534556 PKD1L3Q7Z443 1732 aa7.07□□□□□ -1.28
USH1C-210ENST00000534556 KIF7Q2M1P5 1343 aa7.07□□□□□ -1.28
USH1C-210ENST00000534556 HOXC9P31274 260 aa7.07□□□□□ -1.28
USH1C-210ENST00000534556 TOM1L2Q6ZVM7 507 aa7.07□□□□□ -1.28
USH1C-210ENST00000534556 POLR3GLQ9BT43 218 aa7.07□□□□□ -1.28
USH1C-210ENST00000534556 PANK3Q9H999 370 aa7.07□□□□□ -1.28
USH1C-210ENST00000534556 THRAP3Q9Y2W1 955 aaKnown RBP7.07□□□□□ -1.28
USH1C-210ENST00000534556 MEGF6O75095 1541 aa7.06□□□□□ -1.28
USH1C-210ENST00000534556 SLC24A1O60721 1099 aa7.06□□□□□ -1.28
USH1C-210ENST00000534556 TRIM37O94972 964 aa7.06□□□□□ -1.28
USH1C-210ENST00000534556 EN1Q05925 392 aaPredicted RBP7.06□□□□□ -1.28
USH1C-210ENST00000534556 LTV1Q96GA3 475 aaPredicted RBP7.06□□□□□ -1.28
USH1C-210ENST00000534556 COG3Q96JB2 828 aa7.06□□□□□ -1.28
USH1C-210ENST00000534556 EMILIN1Q9Y6C2 1016 aa7.06□□□□□ -1.28
USH1C-210ENST00000534556 LY75O60449 1722 aa7.06□□□□□ -1.28
USH1C-210ENST00000534556 TNS2Q63HR2 1409 aa7.05□□□□□ -1.28
USH1C-210ENST00000534556 HSP90AB2PQ58FF8 381 aa7.05□□□□□ -1.28
USH1C-210ENST00000534556 NBPF6Q5VWK0 638 aa7.05□□□□□ -1.28
USH1C-210ENST00000534556 USHBP1Q8N6Y0 703 aa7.05□□□□□ -1.28
USH1C-210ENST00000534556 NBPF4Q96M43 638 aa7.05□□□□□ -1.28
USH1C-210ENST00000534556 TAF1LQ8IZX4 1826 aa7.05□□□□□ -1.28
USH1C-210ENST00000534556 CCDC7Q96M83 1385 aa7.05□□□□□ -1.28
USH1C-210ENST00000534556 WASHC2AQ641Q2 1341 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 NCAPD2Q15021 1401 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 PER1O15534 1290 aaPredicted RBP7.04□□□□□ -1.28
USH1C-210ENST00000534556 KCNQ2O43526 872 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 CSB-PGBD3P0DP91 1061 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 EZH2Q15910 746 aaKnown RBP7.04□□□□□ -1.28
USH1C-210ENST00000534556 DDB1Q16531 1140 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 CDCA8Q53HL2 280 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 CCDC125Q86Z20 511 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 CAMKK2Q96RR4 588 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 NLRP2Q9NX02 1062 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 POLKQ9UBT6 870 aa7.04□□□□□ -1.28
USH1C-210ENST00000534556 OVOS2A0A0G2JMS6 1433 aa7.03□□□□□ -1.28
USH1C-210ENST00000534556 CASZ1Q86V15 1759 aa7.03□□□□□ -1.28
USH1C-210ENST00000534556 PAPPAQ13219 1627 aa7.03□□□□□ -1.28
USH1C-210ENST00000534556 PDE3BQ13370 1112 aa7.03□□□□□ -1.28
USH1C-210ENST00000534556 FAM196AQ6ZSG2 479 aa7.03□□□□□ -1.28
USH1C-210ENST00000534556 PROM2Q8N271 834 aa7.03□□□□□ -1.28
USH1C-210ENST00000534556 RTL1A6NKG5 1358 aa7.03□□□□□ -1.28
USH1C-210ENST00000534556 INSRP06213 1382 aa7.03□□□□□ -1.28
USH1C-210ENST00000534556 BCL9O00512 1426 aa7.02□□□□□ -1.29
USH1C-210ENST00000534556 SMG6Q86US8 1419 aaKnown RBP7.02□□□□□ -1.29
USH1C-210ENST00000534556 TNNT2P45379 298 aaPredicted RBP7.02□□□□□ -1.29
USH1C-210ENST00000534556 AMPHP49418 695 aa7.02□□□□□ -1.29
USH1C-210ENST00000534556 AMER1Q5JTC6 1135 aaPredicted RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms