RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CHRNA2Q15822 529 aa9.86□□□□□ -0.83
CD44-237ENST00000534082 PHF12Q96QT6 1004 aa9.86□□□□□ -0.83
CD44-237ENST00000534082 TSPYL2Q9H2G4 693 aaPredicted RBP9.86□□□□□ -0.83
CD44-237ENST00000534082 PHRF1Q9P1Y6 1649 aaKnown RBP9.85□□□□□ -0.83
CD44-237ENST00000534082 ACIN1Q9UKV3 1341 aaKnown RBP9.85□□□□□ -0.83
CD44-237ENST00000534082 OVOS2A0A0G2JMS6 1433 aa9.85□□□□□ -0.83
CD44-237ENST00000534082 OVOS2A0A0J9YW53 1432 aa9.85□□□□□ -0.83
CD44-237ENST00000534082 OVOS2Q6IE36 1432 aa9.85□□□□□ -0.83
CD44-237ENST00000534082 BCL11BQ9C0K0 894 aaPredicted RBP9.85□□□□□ -0.83
CD44-237ENST00000534082 MAP3K5Q99683 1374 aa9.85□□□□□ -0.83
CD44-237ENST00000534082 PEAK1Q9H792 1746 aa9.85□□□□□ -0.83
CD44-237ENST00000534082 PARP4Q9UKK3 1724 aaKnown RBP9.85□□□□□ -0.83
CD44-237ENST00000534082 PIK3C2GO75747 1445 aa9.84□□□□□ -0.83
CD44-237ENST00000534082 PLSCR1O15162 318 aa9.84□□□□□ -0.83
CD44-237ENST00000534082 ITGAEP38570 1179 aa9.84□□□□□ -0.83
CD44-237ENST00000534082 MTFR1LQ9H019 292 aa9.84□□□□□ -0.83
CD44-237ENST00000534082 LOC105371045A0A1W2PR82 267 aa9.83□□□□□ -0.84
CD44-237ENST00000534082 C11orf95C9JLR9 678 aaPredicted RBP9.83□□□□□ -0.84
CD44-237ENST00000534082 GPR162Q16538 588 aa9.83□□□□□ -0.84
CD44-237ENST00000534082 TCP11L2Q8N4U5 519 aa9.83□□□□□ -0.84
CD44-237ENST00000534082 SGIP1Q9BQI5 828 aa9.83□□□□□ -0.84
CD44-237ENST00000534082 SAFB2Q14151 953 aaKnown RBP eCLIP9.82□□□□□ -0.84
CD44-237ENST00000534082 SIRT1Q96EB6 747 aa9.82□□□□□ -0.84
CD44-237ENST00000534082 ARXQ96QS3 562 aa9.82□□□□□ -0.84
CD44-237ENST00000534082 STK32BQ9NY57 414 aa9.82□□□□□ -0.84
CD44-237ENST00000534082 ANKRD30BQ9BXX2 1392 aa9.81□□□□□ -0.84
CD44-237ENST00000534082 CLCN6P51797 869 aa9.81□□□□□ -0.84
CD44-237ENST00000534082 EVA1CP58658 441 aa9.81□□□□□ -0.84
CD44-237ENST00000534082 ZC3H6P61129 1189 aaKnown RBP9.81□□□□□ -0.84
CD44-237ENST00000534082 LARP1Q6PKG0 1096 aaKnown RBP9.81□□□□□ -0.84
CD44-237ENST00000534082 PRAM1Q96QH2 718 aa9.81□□□□□ -0.84
CD44-237ENST00000534082 LRRC37A3O60309 1634 aa9.81□□□□□ -0.84
CD44-237ENST00000534082 LMO7Q8WWI1 1683 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 ATP7BP35670 1465 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 SBF2Q86WG5 1849 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 DHX57Q6P158 1386 aaKnown RBP9.8□□□□□ -0.84
CD44-237ENST00000534082 GALR2O43603 387 aaPredicted RBP9.8□□□□□ -0.84
CD44-237ENST00000534082 HSPA6P17066 643 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 SLC15A2Q16348 729 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 PTF1AQ7RTS3 328 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 DCBLD2Q96PD2 775 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 FBXO3Q9UK99 471 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 THRAP3Q9Y2W1 955 aaKnown RBP9.8□□□□□ -0.84
CD44-237ENST00000534082 TULP4Q9NRJ4 1543 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 PRR36Q9H6K5 1346 aa9.8□□□□□ -0.84
CD44-237ENST00000534082 EIF3AQ14152 1382 aaKnown RBP9.79□□□□□ -0.84
CD44-237ENST00000534082 PELP1Q8IZL8 1130 aaKnown RBP9.79□□□□□ -0.84
CD44-237ENST00000534082 SPATA31E1Q6ZUB1 1445 aa9.79□□□□□ -0.84
CD44-237ENST00000534082 NGDNQ8NEJ9 315 aaKnown RBP9.78□□□□□ -0.84
CD44-237ENST00000534082 ATP10DQ9P241 1426 aa9.78□□□□□ -0.84
CD44-237ENST00000534082 TXNRD1Q16881 649 aa9.77□□□□□ -0.85
CD44-237ENST00000534082 RGL3Q3MIN7 710 aa9.77□□□□□ -0.85
CD44-237ENST00000534082 ZBTB47Q9UFB7 747 aaPredicted RBP9.77□□□□□ -0.85
CD44-237ENST00000534082 COL5A2P05997 1499 aaPredicted RBP9.77□□□□□ -0.85
CD44-237ENST00000534082 POTEIP0CG38 1075 aa9.76□□□□□ -0.85
CD44-237ENST00000534082 KLHL34Q8N239 644 aa9.76□□□□□ -0.85
CD44-237ENST00000534082 HIRIP3Q9BW71 556 aaPredicted RBP9.76□□□□□ -0.85
CD44-237ENST00000534082 POGKQ9P215 609 aa9.76□□□□□ -0.85
CD44-237ENST00000534082 CPDO75976 1380 aa9.75□□□□□ -0.85
CD44-237ENST00000534082 AATKQ6ZMQ8 1374 aa9.75□□□□□ -0.85
CD44-237ENST00000534082 PAPPAQ13219 1627 aa9.75□□□□□ -0.85
CD44-237ENST00000534082 CRB1P82279 1406 aa9.75□□□□□ -0.85
CD44-237ENST00000534082 DDB1Q16531 1140 aa9.75□□□□□ -0.85
CD44-237ENST00000534082 NUTM2GQ5VZR2 741 aa9.75□□□□□ -0.85
CD44-237ENST00000534082 RASEFQ8IZ41 740 aa9.75□□□□□ -0.85
CD44-237ENST00000534082 C14orf93Q9H972 538 aaKnown RBP9.75□□□□□ -0.85
CD44-237ENST00000534082 BCL9O00512 1426 aa9.74□□□□□ -0.85
CD44-237ENST00000534082 TOPAZ1Q8N9V7 1692 aa9.74□□□□□ -0.85
CD44-237ENST00000534082 GPBP1L1Q9HC44 474 aaPredicted RBP9.74□□□□□ -0.85
CD44-237ENST00000534082 ITSN1Q15811 1721 aa9.73□□□□□ -0.85
CD44-237ENST00000534082 CFAP70Q5T0N1 1121 aa9.73□□□□□ -0.85
CD44-237ENST00000534082 MINK1Q8N4C8 1332 aaPredicted RBP9.73□□□□□ -0.85
CD44-237ENST00000534082 AKAP12Q02952 1782 aa9.73□□□□□ -0.85
CD44-237ENST00000534082 WNK3Q9BYP7 1800 aa9.72□□□□□ -0.85
CD44-237ENST00000534082 MARCH10Q8NA82 808 aaPredicted RBP9.72□□□□□ -0.85
CD44-237ENST00000534082 NLGN2Q8NFZ4 835 aa9.72□□□□□ -0.85
CD44-237ENST00000534082 MS4A3Q96HJ5 214 aa9.72□□□□□ -0.85
CD44-237ENST00000534082 USP19O94966 1318 aa9.72□□□□□ -0.85
CD44-237ENST00000534082 WASLO00401 505 aaPredicted RBP9.71□□□□□ -0.86
CD44-237ENST00000534082 GRIN3BO60391 1043 aa9.71□□□□□ -0.86
CD44-237ENST00000534082 YBX3P16989 372 aaKnown RBP eCLIP9.71□□□□□ -0.86
CD44-237ENST00000534082 ZNF526Q8TF50 670 aaPredicted RBP9.71□□□□□ -0.86
CD44-237ENST00000534082 CCDC61Q9Y6R9 512 aa9.71□□□□□ -0.86
CD44-237ENST00000534082 ADCY9O60503 1353 aa9.71□□□□□ -0.86
CD44-237ENST00000534082 POLD1P28340 1107 aa9.7□□□□□ -0.86
CD44-237ENST00000534082 ADGRB1O14514 1584 aa9.7□□□□□ -0.86
CD44-237ENST00000534082 VASPP50552 380 aaPredicted RBP9.69□□□□□ -0.86
CD44-237ENST00000534082 ZNF827Q17R98 1081 aa9.69□□□□□ -0.86
CD44-237ENST00000534082 NHSQ6T4R5 1651 aa9.69□□□□□ -0.86
CD44-237ENST00000534082 COL24A1Q17RW2 1714 aa9.68□□□□□ -0.86
CD44-237ENST00000534082 POLR3AO14802 1390 aaPredicted RBP9.68□□□□□ -0.86
CD44-237ENST00000534082 APLP1P51693 650 aa9.68□□□□□ -0.86
CD44-237ENST00000534082 NUBP1P53384 320 aa9.68□□□□□ -0.86
CD44-237ENST00000534082 COL13A1Q5TAT6 717 aaPredicted RBP9.68□□□□□ -0.86
CD44-237ENST00000534082 TOM1L2Q6ZVM7 507 aa9.68□□□□□ -0.86
CD44-237ENST00000534082 TRAK1Q9UPV9 953 aa9.68□□□□□ -0.86
CD44-237ENST00000534082 ZBTB7CA1YPR0 619 aa9.67□□□□□ -0.86
CD44-237ENST00000534082 GCP02774 474 aa9.67□□□□□ -0.86
CD44-237ENST00000534082 PRELPP51888 382 aa9.67□□□□□ -0.86
CD44-237ENST00000534082 ABTB2Q8N961 1025 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms