RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CD163L1Q9NR16 1453 aa21.7■■□□□ 1.06
CPSF1-211ENST00000533492 WDR17Q8IZU2 1322 aa21.69■■□□□ 1.06
CPSF1-211ENST00000533492 USP31Q70CQ4 1352 aa21.69■■□□□ 1.06
CPSF1-211ENST00000533492 RGPD1P0DJD0 1748 aa21.69■■□□□ 1.06
CPSF1-211ENST00000533492 TIMELESSQ9UNS1 1208 aa21.68■■□□□ 1.06
CPSF1-211ENST00000533492 COL18A1P39060 1754 aa21.67■■□□□ 1.06
CPSF1-211ENST00000533492 EDC4Q6P2E9 1401 aaKnown RBP21.67■■□□□ 1.06
CPSF1-211ENST00000533492 A0A1W2PP64 1363 aa21.66■■□□□ 1.06
CPSF1-211ENST00000533492 TMF1P82094 1093 aa21.66■■□□□ 1.06
CPSF1-211ENST00000533492 USP47Q96K76 1375 aa21.65■■□□□ 1.06
CPSF1-211ENST00000533492 NINLQ9Y2I6 1382 aa21.65■■□□□ 1.06
CPSF1-211ENST00000533492 CLSPNQ9HAW4 1339 aa21.65■■□□□ 1.06
CPSF1-211ENST00000533492 APBA3O96018 575 aa21.65■■□□□ 1.06
CPSF1-211ENST00000533492 DDB1Q16531 1140 aa21.65■■□□□ 1.06
CPSF1-211ENST00000533492 C11orf95C9JLR9 678 aaPredicted RBP21.64■■□□□ 1.05
CPSF1-211ENST00000533492 CARD10Q9BWT7 1032 aa21.64■■□□□ 1.05
CPSF1-211ENST00000533492 NFAT5O94916 1531 aa21.64■■□□□ 1.05
CPSF1-211ENST00000533492 CDCA7Q9BWT1 371 aaPredicted RBP21.63■■□□□ 1.05
CPSF1-211ENST00000533492 RGPD5Q99666 1765 aa21.63■■□□□ 1.05
CPSF1-211ENST00000533492 EZH2Q15910 746 aaKnown RBP21.62■■□□□ 1.05
CPSF1-211ENST00000533492 PARP4Q9UKK3 1724 aaKnown RBP21.62■■□□□ 1.05
CPSF1-211ENST00000533492 DISP2A7MBM2 1401 aa21.61■■□□□ 1.05
CPSF1-211ENST00000533492 CDCA8Q53HL2 280 aa21.6■■□□□ 1.05
CPSF1-211ENST00000533492 TNS1Q9HBL0 1735 aaKnown RBP21.6■■□□□ 1.05
CPSF1-211ENST00000533492 PSDA5PKW4 1024 aaPredicted RBP21.59■■□□□ 1.05
CPSF1-211ENST00000533492 COG3Q96JB2 828 aa21.59■■□□□ 1.05
CPSF1-211ENST00000533492 CAMKK2Q96RR4 588 aa21.59■■□□□ 1.05
CPSF1-211ENST00000533492 USP54Q70EL1 1684 aa21.58■■□□□ 1.05
CPSF1-211ENST00000533492 ABCC6O95255 1503 aa21.58■■□□□ 1.04
CPSF1-211ENST00000533492 CCDC7Q96M83 1385 aa21.58■■□□□ 1.04
CPSF1-211ENST00000533492 OVOS2A0A0G2JMS6 1433 aa21.57■■□□□ 1.04
CPSF1-211ENST00000533492 OVOS2A0A0J9YW53 1432 aa21.57■■□□□ 1.04
CPSF1-211ENST00000533492 OVOS2Q6IE36 1432 aa21.57■■□□□ 1.04
CPSF1-211ENST00000533492 EXOC5O00471 708 aa21.57■■□□□ 1.04
CPSF1-211ENST00000533492 NLRP2Q9NX02 1062 aa21.57■■□□□ 1.04
CPSF1-211ENST00000533492 ANKRD36BQ8N2N9 1353 aa21.56■■□□□ 1.04
CPSF1-211ENST00000533492 PARD3Q8TEW0 1356 aa21.56■■□□□ 1.04
CPSF1-211ENST00000533492 ERBB3P21860 1342 aa21.55■■□□□ 1.04
CPSF1-211ENST00000533492 CCER1Q8TC90 406 aaPredicted RBP21.55■■□□□ 1.04
CPSF1-211ENST00000533492 ANKRD24Q8TF21 1146 aa21.55■■□□□ 1.04
CPSF1-211ENST00000533492 LTN1O94822 1766 aa21.55■■□□□ 1.04
CPSF1-211ENST00000533492 SRCAPQ6ZRS2 3230 aa21.54■■□□□ 1.04
CPSF1-211ENST00000533492 LRRC37A3O60309 1634 aa21.54■■□□□ 1.04
CPSF1-211ENST00000533492 R3HDM1Q15032 1099 aaKnown RBP21.53■■□□□ 1.04
CPSF1-211ENST00000533492 MARCH10Q8NA82 808 aaPredicted RBP21.53■■□□□ 1.04
CPSF1-211ENST00000533492 IP6K1Q92551 441 aa21.52■■□□□ 1.04
CPSF1-211ENST00000533492 WNK3Q9BYP7 1800 aa21.51■■□□□ 1.03
CPSF1-211ENST00000533492 AMPHP49418 695 aa21.5■■□□□ 1.03
CPSF1-211ENST00000533492 NBPF14Q5TI25 921 aa21.5■■□□□ 1.03
CPSF1-211ENST00000533492 LTV1Q96GA3 475 aaPredicted RBP21.5■■□□□ 1.03
CPSF1-211ENST00000533492 BCL11BQ9C0K0 894 aaPredicted RBP21.5■■□□□ 1.03
CPSF1-211ENST00000533492 IL2RBP14784 551 aa21.49■■□□□ 1.03
CPSF1-211ENST00000533492 GGNBP2Q9H3C7 697 aa21.49■■□□□ 1.03
CPSF1-211ENST00000533492 PEAK1Q9H792 1746 aa21.49■■□□□ 1.03
CPSF1-211ENST00000533492 FYB1O15117 783 aa21.48■■□□□ 1.03
CPSF1-211ENST00000533492 FBLN1P23142 703 aa21.48■■□□□ 1.03
CPSF1-211ENST00000533492 MAP3K19Q56UN5 1328 aa21.48■■□□□ 1.03
CPSF1-211ENST00000533492 PLSCR1O15162 318 aa21.47■■□□□ 1.03
CPSF1-211ENST00000533492 SBF2Q86WG5 1849 aa21.46■■□□□ 1.03
CPSF1-211ENST00000533492 HOXC9P31274 260 aa21.46■■□□□ 1.03
CPSF1-211ENST00000533492 BCL9O00512 1426 aa21.46■■□□□ 1.03
CPSF1-211ENST00000533492 TNS2Q63HR2 1409 aa21.45■■□□□ 1.02
CPSF1-211ENST00000533492 PTF1AQ7RTS3 328 aa21.44■■□□□ 1.02
CPSF1-211ENST00000533492 POLR3GLQ9BT43 218 aa21.44■■□□□ 1.02
CPSF1-211ENST00000533492 RRS1Q15050 365 aaKnown RBP21.43■■□□□ 1.02
CPSF1-211ENST00000533492 EIF4G2P78344 907 aaKnown RBP eCLIP21.42■■□□□ 1.02
CPSF1-211ENST00000533492 RREB1Q92766 1687 aa21.42■■□□□ 1.02
CPSF1-211ENST00000533492 ACSBG1Q96GR2 724 aa21.4■■□□□ 1.02
CPSF1-211ENST00000533492 CARD14Q9BXL6 1004 aa21.4■■□□□ 1.02
CPSF1-211ENST00000533492 NUP188Q5SRE5 1749 aa21.4■■□□□ 1.02
CPSF1-211ENST00000533492 KAT6BQ8WYB5 2073 aa21.39■■□□□ 1.01
CPSF1-211ENST00000533492 LRP5O75197 1615 aa21.39■■□□□ 1.01
CPSF1-211ENST00000533492 NSD3Q9BZ95 1437 aa21.38■■□□□ 1.01
CPSF1-211ENST00000533492 RTL1A6NKG5 1358 aa21.38■■□□□ 1.01
CPSF1-211ENST00000533492 KCNQ2O43526 872 aa21.38■■□□□ 1.01
CPSF1-211ENST00000533492 DDX54Q8TDD1 881 aaKnown RBP21.38■■□□□ 1.01
CPSF1-211ENST00000533492 FAM208AQ9UK61 1670 aaKnown RBP21.37■■□□□ 1.01
CPSF1-211ENST00000533492 HSPA5P11021 654 aaKnown RBP21.37■■□□□ 1.01
CPSF1-211ENST00000533492 KIF20BQ96Q89 1820 aa21.36■■□□□ 1.01
CPSF1-211ENST00000533492 RGPD3A6NKT7 1758 aaPredicted RBP21.36■■□□□ 1.01
CPSF1-211ENST00000533492 RGPD4Q7Z3J3 1758 aa21.36■■□□□ 1.01
CPSF1-211ENST00000533492 MYOM1P52179 1685 aa21.35■■□□□ 1.01
CPSF1-211ENST00000533492 TXNRD1Q16881 649 aa21.35■■□□□ 1.01
CPSF1-211ENST00000533492 PROM2Q8N271 834 aa21.35■■□□□ 1.01
CPSF1-211ENST00000533492 SMG6Q86US8 1419 aaKnown RBP21.35■■□□□ 1.01
CPSF1-211ENST00000533492 CGNL1Q0VF96 1302 aa21.33■■□□□ 1.01
CPSF1-211ENST00000533492 HSP90AB2PQ58FF8 381 aa21.33■■□□□ 1.01
CPSF1-211ENST00000533492 NBPF6Q5VWK0 638 aa21.33■■□□□ 1.01
CPSF1-211ENST00000533492 NBPF4Q96M43 638 aa21.33■■□□□ 1.01
CPSF1-211ENST00000533492 ZCRB1Q8TBF4 217 aaKnown RBP21.32■■□□□ 1
CPSF1-211ENST00000533492 FLT4P35916 1363 aa21.32■■□□□ 1
CPSF1-211ENST00000533492 RGPD2P0DJD1 1756 aa21.31■■□□□ 1
CPSF1-211ENST00000533492 PPM1GO15355 546 aaPredicted RBP21.31■■□□□ 1
CPSF1-211ENST00000533492 USHBP1Q8N6Y0 703 aa21.31■■□□□ 1
CPSF1-211ENST00000533492 RAPGEF4Q8WZA2 1011 aa21.31■■□□□ 1
CPSF1-211ENST00000533492 INSRP06213 1382 aa21.31■■□□□ 1
CPSF1-211ENST00000533492 KIF24Q5T7B8 1368 aa21.31■■□□□ 1
CPSF1-211ENST00000533492 ANO8Q9HCE9 1232 aaPredicted RBP21.3■■□□□ 1
CPSF1-211ENST00000533492 STK32BQ9NY57 414 aa21.3■■□□□ 1
CPSF1-211ENST00000533492 NHSQ6T4R5 1651 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms