RNA–Protein interactions for RNA: ENST00000532935.5

CPSF1-210, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-210ENST00000532935 KIF20BQ96Q89 1820 aa21.41■■□□□ 1.02
CPSF1-210ENST00000532935 LARP1Q6PKG0 1096 aaKnown RBP21.41■■□□□ 1.02
CPSF1-210ENST00000532935 A0A0G2JS52 829 aa21.4■■□□□ 1.02
CPSF1-210ENST00000532935 MYT1Q01538 1121 aa21.4■■□□□ 1.02
CPSF1-210ENST00000532935 ABCC6O95255 1503 aa21.39■■□□□ 1.02
CPSF1-210ENST00000532935 USP35Q9P2H5 1018 aa21.38■■□□□ 1.01
CPSF1-210ENST00000532935 AXIN2Q9Y2T1 843 aa21.38■■□□□ 1.01
CPSF1-210ENST00000532935 CRB1P82279 1406 aa21.37■■□□□ 1.01
CPSF1-210ENST00000532935 KRT27Q7Z3Y8 459 aa21.36■■□□□ 1.01
CPSF1-210ENST00000532935 WNK3Q9BYP7 1800 aa21.36■■□□□ 1.01
CPSF1-210ENST00000532935 BARGINQ6ZT62 677 aa21.34■■□□□ 1.01
CPSF1-210ENST00000532935 TCP11L2Q8N4U5 519 aa21.34■■□□□ 1.01
CPSF1-210ENST00000532935 COG3Q96JB2 828 aa21.34■■□□□ 1.01
CPSF1-210ENST00000532935 POLR3GLQ9BT43 218 aa21.34■■□□□ 1.01
CPSF1-210ENST00000532935 WDR17Q8IZU2 1322 aa21.33■■□□□ 1.01
CPSF1-210ENST00000532935 PARP4Q9UKK3 1724 aaKnown RBP21.33■■□□□ 1.01
CPSF1-210ENST00000532935 THRAP3Q9Y2W1 955 aaKnown RBP21.33■■□□□ 1.01
CPSF1-210ENST00000532935 FYB1O15117 783 aa21.32■■□□□ 1
CPSF1-210ENST00000532935 CARD14Q9BXL6 1004 aa21.32■■□□□ 1
CPSF1-210ENST00000532935 NSD3Q9BZ95 1437 aa21.31■■□□□ 1
CPSF1-210ENST00000532935 TOM1L2Q6ZVM7 507 aa21.31■■□□□ 1
CPSF1-210ENST00000532935 CSB-PGBD3P0DP91 1061 aa21.29■■□□□ 1
CPSF1-210ENST00000532935 GGNBP2Q9H3C7 697 aa21.29■■□□□ 1
CPSF1-210ENST00000532935 CCDC125Q86Z20 511 aa21.28■■□□□ 1
CPSF1-210ENST00000532935 C11orf95C9JLR9 678 aaPredicted RBP21.27■■□□□ 1
CPSF1-210ENST00000532935 BLMP54132 1417 aaPredicted RBP21.27■■□□□ 1
CPSF1-210ENST00000532935 LRRC37A3O60309 1634 aa21.26■□□□□ 0.99
CPSF1-210ENST00000532935 FAM208AQ9UK61 1670 aaKnown RBP21.26■□□□□ 0.99
CPSF1-210ENST00000532935 CARD10Q9BWT7 1032 aa21.26■□□□□ 0.99
CPSF1-210ENST00000532935 RGPD1P0DJD0 1748 aa21.26■□□□□ 0.99
CPSF1-210ENST00000532935 ANKRD26Q9UPS8 1709 aa21.26■□□□□ 0.99
CPSF1-210ENST00000532935 ERBB3P21860 1342 aa21.26■□□□□ 0.99
CPSF1-210ENST00000532935 FBLN1P23142 703 aa21.25■□□□□ 0.99
CPSF1-210ENST00000532935 FAM182BQ5T319 152 aa21.25■□□□□ 0.99
CPSF1-210ENST00000532935 MAP3K19Q56UN5 1328 aa21.25■□□□□ 0.99
CPSF1-210ENST00000532935 PDE3BQ13370 1112 aa21.24■□□□□ 0.99
CPSF1-210ENST00000532935 IP6K1Q92551 441 aa21.24■□□□□ 0.99
CPSF1-210ENST00000532935 ANKRD24Q8TF21 1146 aa21.23■□□□□ 0.99
CPSF1-210ENST00000532935 CCDC7Q96M83 1385 aa21.23■□□□□ 0.99
CPSF1-210ENST00000532935 TNS1Q9HBL0 1735 aaKnown RBP21.22■□□□□ 0.99
CPSF1-210ENST00000532935 AMPHP49418 695 aa21.22■□□□□ 0.99
CPSF1-210ENST00000532935 RGPD2P0DJD1 1756 aa21.22■□□□□ 0.99
CPSF1-210ENST00000532935 CGNL1Q0VF96 1302 aa21.22■□□□□ 0.99
CPSF1-210ENST00000532935 MAP2P11137 1827 aaKnown RBP21.22■□□□□ 0.99
CPSF1-210ENST00000532935 RRS1Q15050 365 aaKnown RBP21.21■□□□□ 0.99
CPSF1-210ENST00000532935 PANK3Q9H999 370 aa21.21■□□□□ 0.99
CPSF1-210ENST00000532935 RTL1A6NKG5 1358 aa21.21■□□□□ 0.99
CPSF1-210ENST00000532935 PEAK1Q9H792 1746 aa21.21■□□□□ 0.99
CPSF1-210ENST00000532935 DISP2A7MBM2 1401 aa21.21■□□□□ 0.99
CPSF1-210ENST00000532935 HOXC9P31274 260 aa21.2■□□□□ 0.98
CPSF1-210ENST00000532935 SF3B2Q13435 895 aaKnown RBP21.2■□□□□ 0.98
CPSF1-210ENST00000532935 CDCA7Q9BWT1 371 aaPredicted RBP21.2■□□□□ 0.98
CPSF1-210ENST00000532935 NLRP2Q9NX02 1062 aa21.2■□□□□ 0.98
CPSF1-210ENST00000532935 KIF7Q2M1P5 1343 aa21.2■□□□□ 0.98
CPSF1-210ENST00000532935 FAM196AQ6ZSG2 479 aa21.19■□□□□ 0.98
CPSF1-210ENST00000532935 SBF2Q86WG5 1849 aa21.18■□□□□ 0.98
CPSF1-210ENST00000532935 DDB1Q16531 1140 aa21.18■□□□□ 0.98
CPSF1-210ENST00000532935 LTV1Q96GA3 475 aaPredicted RBP21.18■□□□□ 0.98
CPSF1-210ENST00000532935 DEFB132Q7Z7B7 95 aa21.16■□□□□ 0.98
CPSF1-210ENST00000532935 OVOS2A0A0G2JMS6 1433 aa21.14■□□□□ 0.98
CPSF1-210ENST00000532935 KIF24Q5T7B8 1368 aa21.14■□□□□ 0.98
CPSF1-210ENST00000532935 FLT4P35916 1363 aa21.13■□□□□ 0.97
CPSF1-210ENST00000532935 TRIM37O94972 964 aa21.13■□□□□ 0.97
CPSF1-210ENST00000532935 TNS2Q63HR2 1409 aa21.12■□□□□ 0.97
CPSF1-210ENST00000532935 BAG6P46379 1132 aa21.12■□□□□ 0.97
CPSF1-210ENST00000532935 SMG6Q86US8 1419 aaKnown RBP21.12■□□□□ 0.97
CPSF1-210ENST00000532935 NSD2O96028 1365 aa21.11■□□□□ 0.97
CPSF1-210ENST00000532935 INSRP06213 1382 aa21.11■□□□□ 0.97
CPSF1-210ENST00000532935 EXOC5O00471 708 aa21.11■□□□□ 0.97
CPSF1-210ENST00000532935 IL2RBP14784 551 aa21.11■□□□□ 0.97
CPSF1-210ENST00000532935 EMILIN1Q9Y6C2 1016 aa21.11■□□□□ 0.97
CPSF1-210ENST00000532935 HSP90AB2PQ58FF8 381 aa21.1■□□□□ 0.97
CPSF1-210ENST00000532935 MARCH10Q8NA82 808 aaPredicted RBP21.1■□□□□ 0.97
CPSF1-210ENST00000532935 KNSTRNQ9Y448 316 aa21.09■□□□□ 0.97
CPSF1-210ENST00000532935 WASHC2AQ641Q2 1341 aa21.07■□□□□ 0.96
CPSF1-210ENST00000532935 PPM1GO15355 546 aaPredicted RBP21.07■□□□□ 0.96
CPSF1-210ENST00000532935 TNNT2P45379 298 aaPredicted RBP21.07■□□□□ 0.96
CPSF1-210ENST00000532935 BCL9O00512 1426 aa21.06■□□□□ 0.96
CPSF1-210ENST00000532935 EN1Q05925 392 aaPredicted RBP21.06■□□□□ 0.96
CPSF1-210ENST00000532935 NBPF6Q5VWK0 638 aa21.06■□□□□ 0.96
CPSF1-210ENST00000532935 NBPF4Q96M43 638 aa21.06■□□□□ 0.96
CPSF1-210ENST00000532935 POLKQ9UBT6 870 aa21.06■□□□□ 0.96
CPSF1-210ENST00000532935 SHANK3Q9BYB0 1731 aa21.06■□□□□ 0.96
CPSF1-210ENST00000532935 KAT6BQ8WYB5 2073 aa21.06■□□□□ 0.96
CPSF1-210ENST00000532935 APBA3O96018 575 aa21.05■□□□□ 0.96
CPSF1-210ENST00000532935 RREB1Q92766 1687 aa21.04■□□□□ 0.96
CPSF1-210ENST00000532935 MEGF6O75095 1541 aa21.04■□□□□ 0.96
CPSF1-210ENST00000532935 AMER1Q5JTC6 1135 aaPredicted RBP21.03■□□□□ 0.96
CPSF1-210ENST00000532935 MORC1Q86VD1 984 aa21.03■□□□□ 0.96
CPSF1-210ENST00000532935 USHBP1Q8N6Y0 703 aa21.03■□□□□ 0.96
CPSF1-210ENST00000532935 RGPD3A6NKT7 1758 aaPredicted RBP21.02■□□□□ 0.96
CPSF1-210ENST00000532935 RGPD4Q7Z3J3 1758 aa21.02■□□□□ 0.96
CPSF1-210ENST00000532935 NHSQ6T4R5 1651 aa21.02■□□□□ 0.96
CPSF1-210ENST00000532935 PER1O15534 1290 aaPredicted RBP21.01■□□□□ 0.95
CPSF1-210ENST00000532935 EZH2Q15910 746 aaKnown RBP21.01■□□□□ 0.95
CPSF1-210ENST00000532935 CAMKK2Q96RR4 588 aa21.01■□□□□ 0.95
CPSF1-210ENST00000532935 PARD3Q8TEW0 1356 aa21■□□□□ 0.95
CPSF1-210ENST00000532935 BCL11BQ9C0K0 894 aaPredicted RBP21■□□□□ 0.95
CPSF1-210ENST00000532935 NUP188Q5SRE5 1749 aa20.99■□□□□ 0.95
CPSF1-210ENST00000532935 NCAPD2Q15021 1401 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms