RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 KCNH5Q8NCM2 988 aa16.21■□□□□ 0.19
VPS28-214ENST00000531032 AXIN2Q9Y2T1 843 aa16.21■□□□□ 0.19
VPS28-214ENST00000531032 WDR17Q8IZU2 1322 aa16.2■□□□□ 0.18
VPS28-214ENST00000531032 OVOS2A0A0G2JMS6 1433 aa16.2■□□□□ 0.18
VPS28-214ENST00000531032 OVOS2A0A0J9YW53 1432 aa16.2■□□□□ 0.18
VPS28-214ENST00000531032 OVOS2Q6IE36 1432 aa16.2■□□□□ 0.18
VPS28-214ENST00000531032 KTN1Q86UP2 1357 aaKnown RBP16.2■□□□□ 0.18
VPS28-214ENST00000531032 USP54Q70EL1 1684 aa16.2■□□□□ 0.18
VPS28-214ENST00000531032 ABCC6O95255 1503 aa16.19■□□□□ 0.18
VPS28-214ENST00000531032 RGPD5Q99666 1765 aa16.19■□□□□ 0.18
VPS28-214ENST00000531032 TOM1L2Q6ZVM7 507 aa16.19■□□□□ 0.18
VPS28-214ENST00000531032 SBF2Q86WG5 1849 aa16.19■□□□□ 0.18
VPS28-214ENST00000531032 RGPD3A6NKT7 1758 aaPredicted RBP16.18■□□□□ 0.18
VPS28-214ENST00000531032 RGPD4Q7Z3J3 1758 aa16.18■□□□□ 0.18
VPS28-214ENST00000531032 CD163L1Q9NR16 1453 aa16.17■□□□□ 0.18
VPS28-214ENST00000531032 DDB1Q16531 1140 aa16.17■□□□□ 0.18
VPS28-214ENST00000531032 CARD11Q9BXL7 1154 aa16.17■□□□□ 0.18
VPS28-214ENST00000531032 CDCA7Q9BWT1 371 aaPredicted RBP16.16■□□□□ 0.18
VPS28-214ENST00000531032 BCL9O00512 1426 aa16.16■□□□□ 0.18
VPS28-214ENST00000531032 USP31Q70CQ4 1352 aa16.15■□□□□ 0.18
VPS28-214ENST00000531032 SOX12O15370 315 aa16.15■□□□□ 0.18
VPS28-214ENST00000531032 CARD10Q9BWT7 1032 aa16.15■□□□□ 0.18
VPS28-214ENST00000531032 TONSLQ96HA7 1378 aa16.14■□□□□ 0.17
VPS28-214ENST00000531032 NBPF14Q5TI25 921 aa16.13■□□□□ 0.17
VPS28-214ENST00000531032 PLSCR1O15162 318 aa16.12■□□□□ 0.17
VPS28-214ENST00000531032 CSB-PGBD3P0DP91 1061 aa16.12■□□□□ 0.17
VPS28-214ENST00000531032 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.12■□□□□ 0.17
VPS28-214ENST00000531032 MARCH10Q8NA82 808 aaPredicted RBP16.12■□□□□ 0.17
VPS28-214ENST00000531032 CCDC7Q96M83 1385 aa16.12■□□□□ 0.17
VPS28-214ENST00000531032 EDC4Q6P2E9 1401 aaKnown RBP16.11■□□□□ 0.17
VPS28-214ENST00000531032 LTN1O94822 1766 aa16.11■□□□□ 0.17
VPS28-214ENST00000531032 NME9Q86XW9 330 aa16.11■□□□□ 0.17
VPS28-214ENST00000531032 PUS7Q96PZ0 661 aaKnown RBP16.11■□□□□ 0.17
VPS28-214ENST00000531032 BCL11BQ9C0K0 894 aaPredicted RBP16.11■□□□□ 0.17
VPS28-214ENST00000531032 HDGFL2Q7Z4V5 671 aaPredicted RBP16.1■□□□□ 0.17
VPS28-214ENST00000531032 TMC1Q8TDI8 760 aa16.1■□□□□ 0.17
VPS28-214ENST00000531032 SLC12A5Q9H2X9 1139 aa16.1■□□□□ 0.17
VPS28-214ENST00000531032 TNS2Q63HR2 1409 aa16.1■□□□□ 0.17
VPS28-214ENST00000531032 PTF1AQ7RTS3 328 aa16.09■□□□□ 0.17
VPS28-214ENST00000531032 ERBB3P21860 1342 aa16.09■□□□□ 0.17
VPS28-214ENST00000531032 A0A1W2PP64 1363 aa16.09■□□□□ 0.17
VPS28-214ENST00000531032 TERF2IPQ9NYB0 399 aa16.08■□□□□ 0.16
VPS28-214ENST00000531032 EXOC5O00471 708 aa16.07■□□□□ 0.16
VPS28-214ENST00000531032 NINLQ9Y2I6 1382 aa16.07■□□□□ 0.16
VPS28-214ENST00000531032 TESK2Q96S53 571 aa16.06■□□□□ 0.16
VPS28-214ENST00000531032 CASZ1Q86V15 1759 aa16.05■□□□□ 0.16
VPS28-214ENST00000531032 PROM2Q8N271 834 aa16.05■□□□□ 0.16
VPS28-214ENST00000531032 ANO8Q9HCE9 1232 aaPredicted RBP16.05■□□□□ 0.16
VPS28-214ENST00000531032 NHSQ6T4R5 1651 aa16.05■□□□□ 0.16
VPS28-214ENST00000531032 SPON1Q9HCB6 807 aa16.04■□□□□ 0.16
VPS28-214ENST00000531032 ST20-MTHFSA0A0A6YYL1 179 aa16.03■□□□□ 0.16
VPS28-214ENST00000531032 NLRP2Q9NX02 1062 aa16.03■□□□□ 0.16
VPS28-214ENST00000531032 FAM208AQ9UK61 1670 aaKnown RBP16.02■□□□□ 0.16
VPS28-214ENST00000531032 KCNQ2O43526 872 aa16.02■□□□□ 0.16
VPS28-214ENST00000531032 SLC24A1O60721 1099 aa16.02■□□□□ 0.16
VPS28-214ENST00000531032 IL2RBP14784 551 aa16.02■□□□□ 0.16
VPS28-214ENST00000531032 ANKRD24Q8TF21 1146 aa16.02■□□□□ 0.16
VPS28-214ENST00000531032 TXNRD1Q16881 649 aa16■□□□□ 0.15
VPS28-214ENST00000531032 IP6K1Q92551 441 aa16■□□□□ 0.15
VPS28-214ENST00000531032 ANKRD36BQ8N2N9 1353 aa15.99■□□□□ 0.15
VPS28-214ENST00000531032 PPP1R1BQ9UD71 204 aaPredicted RBP15.98■□□□□ 0.15
VPS28-214ENST00000531032 BTAF1O14981 1849 aa15.98■□□□□ 0.15
VPS28-214ENST00000531032 PAPPAQ13219 1627 aa15.97■□□□□ 0.15
VPS28-214ENST00000531032 TRIM26Q12899 539 aaPredicted RBP15.97■□□□□ 0.15
VPS28-214ENST00000531032 COG3Q96JB2 828 aa15.97■□□□□ 0.15
VPS28-214ENST00000531032 PDGFDQ9GZP0 370 aaPredicted RBP15.97■□□□□ 0.15
VPS28-214ENST00000531032 MAP3K19Q56UN5 1328 aa15.96■□□□□ 0.15
VPS28-214ENST00000531032 ACSBG1Q96GR2 724 aa15.96■□□□□ 0.15
VPS28-214ENST00000531032 STK32BQ9NY57 414 aa15.96■□□□□ 0.15
VPS28-214ENST00000531032 USP47Q96K76 1375 aa15.96■□□□□ 0.15
VPS28-214ENST00000531032 SLC15A2Q16348 729 aa15.95■□□□□ 0.14
VPS28-214ENST00000531032 HOXC9P31274 260 aa15.94■□□□□ 0.14
VPS28-214ENST00000531032 MYOM1P52179 1685 aa15.94■□□□□ 0.14
VPS28-214ENST00000531032 RTL1A6NKG5 1358 aa15.93■□□□□ 0.14
VPS28-214ENST00000531032 ZBTB7AO95365 584 aa15.93■□□□□ 0.14
VPS28-214ENST00000531032 PTGER2P43116 358 aa15.93■□□□□ 0.14
VPS28-214ENST00000531032 TMF1P82094 1093 aa15.93■□□□□ 0.14
VPS28-214ENST00000531032 LTV1Q96GA3 475 aaPredicted RBP15.93■□□□□ 0.14
VPS28-214ENST00000531032 RGPD2P0DJD1 1756 aa15.92■□□□□ 0.14
VPS28-214ENST00000531032 SHANK3Q9BYB0 1731 aa15.92■□□□□ 0.14
VPS28-214ENST00000531032 FBLN1P23142 703 aa15.92■□□□□ 0.14
VPS28-214ENST00000531032 AMPHP49418 695 aa15.92■□□□□ 0.14
VPS28-214ENST00000531032 FYB1O15117 783 aa15.91■□□□□ 0.14
VPS28-214ENST00000531032 KAT6BQ8WYB5 2073 aa15.9■□□□□ 0.14
VPS28-214ENST00000531032 MEGF6O75095 1541 aa15.9■□□□□ 0.14
VPS28-214ENST00000531032 KIF20BQ96Q89 1820 aa15.9■□□□□ 0.14
VPS28-214ENST00000531032 DDX54Q8TDD1 881 aaKnown RBP15.9■□□□□ 0.14
VPS28-214ENST00000531032 MTFR1LQ9H019 292 aa15.9■□□□□ 0.14
VPS28-214ENST00000531032 DOT1LQ8TEK3 1739 aa15.9■□□□□ 0.14
VPS28-214ENST00000531032 GGNBP2Q9H3C7 697 aa15.89■□□□□ 0.13
VPS28-214ENST00000531032 ATF5Q9Y2D1 282 aaPredicted RBP15.89■□□□□ 0.13
VPS28-214ENST00000531032 RRS1Q15050 365 aaKnown RBP15.88■□□□□ 0.13
VPS28-214ENST00000531032 CDCA8Q53HL2 280 aa15.88■□□□□ 0.13
VPS28-214ENST00000531032 SGIP1Q9BQI5 828 aa15.88■□□□□ 0.13
VPS28-214ENST00000531032 LRRC4BQ9NT99 713 aa15.88■□□□□ 0.13
VPS28-214ENST00000531032 QSER1Q2KHR3 1735 aa15.88■□□□□ 0.13
VPS28-214ENST00000531032 YY1P25490 414 aa15.87■□□□□ 0.13
VPS28-214ENST00000531032 ZNF827Q17R98 1081 aa15.87■□□□□ 0.13
VPS28-214ENST00000531032 SLC27A3Q5K4L6 730 aa15.87■□□□□ 0.13
VPS28-214ENST00000531032 NSD2O96028 1365 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms