RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 DACH1Q9UI36 760 aa14.58□□□□□ -0.08
CSDE1-213ENST00000530784 CDV3Q9UKY7 258 aaKnown RBP14.58□□□□□ -0.08
CSDE1-213ENST00000530784 COG6Q9Y2V7 657 aa14.57□□□□□ -0.08
CSDE1-213ENST00000530784 PCDHB9Q9Y5E1 797 aa14.57□□□□□ -0.08
CSDE1-213ENST00000530784 KLF16Q9BXK1 252 aaPredicted RBP14.56□□□□□ -0.08
CSDE1-213ENST00000530784 CAPN5O15484 640 aaPredicted RBP14.55□□□□□ -0.08
CSDE1-213ENST00000530784 WDR4P57081 412 aaKnown RBP14.55□□□□□ -0.08
CSDE1-213ENST00000530784 POM121Q96HA1 1249 aa14.55□□□□□ -0.08
CSDE1-213ENST00000530784 TIMP2P16035 220 aa14.54□□□□□ -0.08
CSDE1-213ENST00000530784 NBPF20Q3BBV1 942 aa14.53□□□□□ -0.08
CSDE1-213ENST00000530784 INTS6LQ5JSJ4 861 aaKnown RBP14.52□□□□□ -0.09
CSDE1-213ENST00000530784 CCDC116Q8IYX3 515 aa14.52□□□□□ -0.09
CSDE1-213ENST00000530784 ITPKCQ96DU7 683 aa14.52□□□□□ -0.09
CSDE1-213ENST00000530784 ZIC2O95409 532 aaPredicted RBP14.51□□□□□ -0.09
CSDE1-213ENST00000530784 UBTFP17480 764 aaKnown RBP14.51□□□□□ -0.09
CSDE1-213ENST00000530784 ZFAND3Q9H8U3 227 aa14.51□□□□□ -0.09
CSDE1-213ENST00000530784 ZNF330Q9Y3S2 320 aaPredicted RBP14.5□□□□□ -0.09
CSDE1-213ENST00000530784 RAB15P59190 212 aa14.49□□□□□ -0.09
CSDE1-213ENST00000530784 VAC14Q08AM6 782 aa14.49□□□□□ -0.09
CSDE1-213ENST00000530784 PPP1R26Q5T8A7 1209 aaPredicted RBP14.49□□□□□ -0.09
CSDE1-213ENST00000530784 ESPNB1AK53 854 aa14.48□□□□□ -0.09
CSDE1-213ENST00000530784 ATP13A2Q9NQ11 1180 aa14.48□□□□□ -0.09
CSDE1-213ENST00000530784 EMILIN1Q9Y6C2 1016 aa14.48□□□□□ -0.09
CSDE1-213ENST00000530784 POTECB2RU33 542 aa14.47□□□□□ -0.09
CSDE1-213ENST00000530784 RAD21O60216 631 aa14.47□□□□□ -0.09
CSDE1-213ENST00000530784 GIGYF1O75420 1035 aaPredicted RBP14.47□□□□□ -0.09
CSDE1-213ENST00000530784 BMP1P13497 986 aa14.45□□□□□ -0.1
CSDE1-213ENST00000530784 MCCD1P59942 119 aaPredicted RBP14.45□□□□□ -0.1
CSDE1-213ENST00000530784 DHX9Q08211 1270 aaKnown RBP14.44□□□□□ -0.1
CSDE1-213ENST00000530784 WASHC4Q2M389 1173 aa14.44□□□□□ -0.1
CSDE1-213ENST00000530784 GMPR2Q9P2T1 348 aaKnown RBP14.44□□□□□ -0.1
CSDE1-213ENST00000530784 ERVH48-1M5A8F1 160 aa14.43□□□□□ -0.1
CSDE1-213ENST00000530784 EIF4G2P78344 907 aaKnown RBP eCLIP14.43□□□□□ -0.1
CSDE1-213ENST00000530784 TRIM46Q7Z4K8 759 aa14.43□□□□□ -0.1
CSDE1-213ENST00000530784 ZNF592Q92610 1267 aa14.43□□□□□ -0.1
CSDE1-213ENST00000530784 TMPRSS4Q9NRS4 437 aa14.43□□□□□ -0.1
CSDE1-213ENST00000530784 PGPEP1Q9NXJ5 209 aa14.43□□□□□ -0.1
CSDE1-213ENST00000530784 ZNF787Q6DD87 383 aa14.42□□□□□ -0.1
CSDE1-213ENST00000530784 SEPT12Q8IYM1 358 aa14.42□□□□□ -0.1
CSDE1-213ENST00000530784 CLUAP1Q96AJ1 413 aa14.42□□□□□ -0.1
CSDE1-213ENST00000530784 CEP126Q9P2H0 1117 aa14.4□□□□□ -0.1
CSDE1-213ENST00000530784 CBLBQ13191 982 aa14.38□□□□□ -0.11
CSDE1-213ENST00000530784 MRPL14Q6P1L8 145 aaKnown RBP14.38□□□□□ -0.11
CSDE1-213ENST00000530784 WWC1Q8IX03 1113 aa14.37□□□□□ -0.11
CSDE1-213ENST00000530784 MEIOBQ8N635 442 aa14.37□□□□□ -0.11
CSDE1-213ENST00000530784 ZNF784Q8NCA9 323 aaPredicted RBP14.37□□□□□ -0.11
CSDE1-213ENST00000530784 RNF20Q5VTR2 975 aa14.36□□□□□ -0.11
CSDE1-213ENST00000530784 Q6ZVU0 165 aa14.35□□□□□ -0.11
CSDE1-213ENST00000530784 C11orf95C9JLR9 678 aaPredicted RBP14.34□□□□□ -0.11
CSDE1-213ENST00000530784 LILRA1O75019 489 aa14.34□□□□□ -0.11
CSDE1-213ENST00000530784 ZFP42Q96MM3 310 aa14.34□□□□□ -0.11
CSDE1-213ENST00000530784 PURBQ96QR8 312 aaKnown RBP14.34□□□□□ -0.11
CSDE1-213ENST00000530784 SENP2Q9HC62 589 aa14.34□□□□□ -0.11
CSDE1-213ENST00000530784 SEMA3FQ13275 785 aa14.33□□□□□ -0.12
CSDE1-213ENST00000530784 TRIM47Q96LD4 638 aa14.33□□□□□ -0.12
CSDE1-213ENST00000530784 CYLDQ9NQC7 956 aa14.33□□□□□ -0.12
CSDE1-213ENST00000530784 SNRPBP14678 240 aaKnown RBP14.32□□□□□ -0.12
CSDE1-213ENST00000530784 ADD1P35611 737 aaKnown RBP14.32□□□□□ -0.12
CSDE1-213ENST00000530784 SCARF1Q14162 830 aa14.32□□□□□ -0.12
CSDE1-213ENST00000530784 C6orf118Q5T5N4 469 aa14.32□□□□□ -0.12
CSDE1-213ENST00000530784 CCDC125Q86Z20 511 aa14.32□□□□□ -0.12
CSDE1-213ENST00000530784 ABCC9O60706 1549 aa14.31□□□□□ -0.12
CSDE1-213ENST00000530784 POM121CA8CG34 1229 aa14.31□□□□□ -0.12
CSDE1-213ENST00000530784 SOX11P35716 441 aa14.31□□□□□ -0.12
CSDE1-213ENST00000530784 LINC00528Q8N1L1 170 aa14.31□□□□□ -0.12
CSDE1-213ENST00000530784 PCDHB11Q9Y5F2 797 aa14.31□□□□□ -0.12
CSDE1-213ENST00000530784 PHTF2Q8N3S3 785 aa14.3□□□□□ -0.12
CSDE1-213ENST00000530784 FNBP4Q8N3X1 1017 aaPredicted RBP14.3□□□□□ -0.12
CSDE1-213ENST00000530784 CCDC85AQ96PX6 553 aaPredicted RBP14.3□□□□□ -0.12
CSDE1-213ENST00000530784 GTF3C3Q9Y5Q9 886 aa14.3□□□□□ -0.12
CSDE1-213ENST00000530784 UPP2O95045 317 aa14.29□□□□□ -0.12
CSDE1-213ENST00000530784 BMP2P12643 396 aa14.29□□□□□ -0.12
CSDE1-213ENST00000530784 TSGA10IPQ3SY00 556 aa14.29□□□□□ -0.12
CSDE1-213ENST00000530784 SLFNL1Q499Z3 407 aa14.29□□□□□ -0.12
CSDE1-213ENST00000530784 PROSER2Q86WR7 435 aaPredicted RBP14.29□□□□□ -0.12
CSDE1-213ENST00000530784 KIFC2Q96AC6 838 aa14.29□□□□□ -0.12
CSDE1-213ENST00000530784 AGBL1Q96MI9 1066 aa14.29□□□□□ -0.12
CSDE1-213ENST00000530784 TSEN34Q9BSV6 310 aaKnown RBP14.29□□□□□ -0.12
CSDE1-213ENST00000530784 ALG2Q9H553 416 aa14.29□□□□□ -0.12
CSDE1-213ENST00000530784 CCDC180Q9P1Z9 1646 aa14.28□□□□□ -0.12
CSDE1-213ENST00000530784 A6NJR5 290 aa14.27□□□□□ -0.13
CSDE1-213ENST00000530784 RNF135Q8IUD6 432 aa14.27□□□□□ -0.13
CSDE1-213ENST00000530784 CDCA7Q9BWT1 371 aaPredicted RBP14.27□□□□□ -0.13
CSDE1-213ENST00000530784 SCTRP47872 440 aa14.26□□□□□ -0.13
CSDE1-213ENST00000530784 ERVK-9P63128 1117 aa14.26□□□□□ -0.13
CSDE1-213ENST00000530784 RELBQ01201 579 aa14.26□□□□□ -0.13
CSDE1-213ENST00000530784 ADH1AP07327 375 aa14.25□□□□□ -0.13
CSDE1-213ENST00000530784 CC2D2BQ6DHV5 1058 aa14.24□□□□□ -0.13
CSDE1-213ENST00000530784 KDF1Q8NAX2 398 aaPredicted RBP14.24□□□□□ -0.13
CSDE1-213ENST00000530784 ADAMTS19Q8TE59 1207 aa14.24□□□□□ -0.13
CSDE1-213ENST00000530784 TRIM52Q96A61 297 aa14.23□□□□□ -0.13
CSDE1-213ENST00000530784 ZNF395Q9H8N7 513 aaPredicted RBP14.22□□□□□ -0.13
CSDE1-213ENST00000530784 CHIC2Q9UKJ5 165 aa14.22□□□□□ -0.13
CSDE1-213ENST00000530784 DOLKQ9UPQ8 538 aa14.22□□□□□ -0.13
CSDE1-213ENST00000530784 PIK3CDO00329 1044 aa14.21□□□□□ -0.13
CSDE1-213ENST00000530784 HDGFL1Q5TGJ6 251 aa14.21□□□□□ -0.13
CSDE1-213ENST00000530784 SPINT1O43278 529 aa14.2□□□□□ -0.14
CSDE1-213ENST00000530784 PTGIRP43119 386 aa14.2□□□□□ -0.14
CSDE1-213ENST00000530784 OSBPL3Q9H4L5 887 aa14.19□□□□□ -0.14
CSDE1-213ENST00000530784 SOS2Q07890 1332 aaPredicted RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms