RNA–Protein interactions for RNA: ENST00000530700.1

USH1C-209, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 403 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-209ENST00000530700 COL22A1Q8NFW1 1626 aaPredicted RBP18.24■□□□□ 0.51
USH1C-209ENST00000530700 USP54Q70EL1 1684 aa18.24■□□□□ 0.51
USH1C-209ENST00000530700 MRS2Q9HD23 443 aa18.23■□□□□ 0.51
USH1C-209ENST00000530700 BLMP54132 1417 aaPredicted RBP18.23■□□□□ 0.51
USH1C-209ENST00000530700 C8orf37Q96NL8 207 aa18.22■□□□□ 0.51
USH1C-209ENST00000530700 BTG4Q9NY30 223 aa18.22■□□□□ 0.51
USH1C-209ENST00000530700 AXIN2Q9Y2T1 843 aa18.22■□□□□ 0.51
USH1C-209ENST00000530700 NFAT5O94916 1531 aa18.22■□□□□ 0.51
USH1C-209ENST00000530700 SMG6Q86US8 1419 aaKnown RBP18.22■□□□□ 0.51
USH1C-209ENST00000530700 SHPRHQ149N8 1683 aa18.22■□□□□ 0.51
USH1C-209ENST00000530700 CSB-PGBD3P0DP91 1061 aa18.21■□□□□ 0.51
USH1C-209ENST00000530700 FNBP4Q8N3X1 1017 aaPredicted RBP18.21■□□□□ 0.51
USH1C-209ENST00000530700 ANKRD24Q8TF21 1146 aa18.21■□□□□ 0.51
USH1C-209ENST00000530700 PNNQ9H307 717 aaKnown RBP18.2■□□□□ 0.5
USH1C-209ENST00000530700 IL13P35225 146 aa18.19■□□□□ 0.5
USH1C-209ENST00000530700 EIF4A2Q14240 407 aaKnown RBP18.19■□□□□ 0.5
USH1C-209ENST00000530700 WDR43Q15061 677 aaKnown RBP eCLIP18.19■□□□□ 0.5
USH1C-209ENST00000530700 LTV1Q96GA3 475 aaPredicted RBP18.19■□□□□ 0.5
USH1C-209ENST00000530700 ANKRD26Q9UPS8 1709 aa18.19■□□□□ 0.5
USH1C-209ENST00000530700 UNC5CLQ8IV45 518 aa18.18■□□□□ 0.5
USH1C-209ENST00000530700 STRN4Q9NRL3 753 aa18.18■□□□□ 0.5
USH1C-209ENST00000530700 CDK12Q9NYV4 1490 aaPredicted RBP18.18■□□□□ 0.5
USH1C-209ENST00000530700 USP21Q9UK80 565 aa18.17■□□□□ 0.5
USH1C-209ENST00000530700 ABCC6O95255 1503 aa18.17■□□□□ 0.5
USH1C-209ENST00000530700 ERBB3P21860 1342 aa18.17■□□□□ 0.5
USH1C-209ENST00000530700 U2SURPO15042 1029 aaKnown RBP18.16■□□□□ 0.5
USH1C-209ENST00000530700 TOM1L2Q6ZVM7 507 aa18.16■□□□□ 0.5
USH1C-209ENST00000530700 NLRP2Q9NX02 1062 aa18.16■□□□□ 0.5
USH1C-209ENST00000530700 WDR17Q8IZU2 1322 aa18.16■□□□□ 0.5
USH1C-209ENST00000530700 U2AF1L5P0DN76 240 aaPredicted RBP18.15■□□□□ 0.5
USH1C-209ENST00000530700 U2AF1Q01081 240 aaKnown RBP eCLIP18.15■□□□□ 0.5
USH1C-209ENST00000530700 ZNF772Q68DY9 489 aaPredicted RBP18.15■□□□□ 0.5
USH1C-209ENST00000530700 PNISRQ8TF01 805 aaKnown RBP18.15■□□□□ 0.5
USH1C-209ENST00000530700 PHRF1Q9P1Y6 1649 aaKnown RBP18.14■□□□□ 0.49
USH1C-209ENST00000530700 CARD10Q9BWT7 1032 aa18.14■□□□□ 0.49
USH1C-209ENST00000530700 MARF1Q9Y4F3 1742 aaKnown RBP18.13■□□□□ 0.49
USH1C-209ENST00000530700 FCHSD2O94868 740 aa18.13■□□□□ 0.49
USH1C-209ENST00000530700 NEFMP07197 916 aa18.13■□□□□ 0.49
USH1C-209ENST00000530700 EYA1Q99502 592 aa18.13■□□□□ 0.49
USH1C-209ENST00000530700 VPS72Q15906 364 aa18.12■□□□□ 0.49
USH1C-209ENST00000530700 CCDC184Q52MB2 194 aa18.12■□□□□ 0.49
USH1C-209ENST00000530700 NBPF6Q5VWK0 638 aa18.12■□□□□ 0.49
USH1C-209ENST00000530700 NBPF4Q96M43 638 aa18.12■□□□□ 0.49
USH1C-209ENST00000530700 TRPC5Q9UL62 973 aaPredicted RBP18.12■□□□□ 0.49
USH1C-209ENST00000530700 THRAP3Q9Y2W1 955 aaKnown RBP18.12■□□□□ 0.49
USH1C-209ENST00000530700 AFF2P51816 1311 aa18.12■□□□□ 0.49
USH1C-209ENST00000530700 LARP1Q6PKG0 1096 aaKnown RBP18.11■□□□□ 0.49
USH1C-209ENST00000530700 CCDC9Q9Y3X0 531 aaKnown RBP18.11■□□□□ 0.49
USH1C-209ENST00000530700 SLIT2O94813 1529 aa18.11■□□□□ 0.49
USH1C-209ENST00000530700 LRP6O75581 1613 aa18.11■□□□□ 0.49
USH1C-209ENST00000530700 MAP2P11137 1827 aaKnown RBP18.1■□□□□ 0.49
USH1C-209ENST00000530700 CRYBG1Q9Y4K1 1723 aa18.1■□□□□ 0.49
USH1C-209ENST00000530700 CAMTA1Q9Y6Y1 1673 aa18.1■□□□□ 0.49
USH1C-209ENST00000530700 IGSF1Q8N6C5 1336 aa18.1■□□□□ 0.49
USH1C-209ENST00000530700 ADRA2BP18089 450 aa18.1■□□□□ 0.49
USH1C-209ENST00000530700 SULT6B1Q6IMI4 303 aa18.1■□□□□ 0.49
USH1C-209ENST00000530700 CDCA7Q9BWT1 371 aaPredicted RBP18.1■□□□□ 0.49
USH1C-209ENST00000530700 COL14A1Q05707 1796 aaKnown RBP18.09■□□□□ 0.49
USH1C-209ENST00000530700 COL5A2P05997 1499 aaPredicted RBP18.09■□□□□ 0.49
USH1C-209ENST00000530700 FAM9BQ8IZU0 186 aa18.09■□□□□ 0.49
USH1C-209ENST00000530700 QTRT2Q9H974 415 aaKnown RBP18.09■□□□□ 0.49
USH1C-209ENST00000530700 ADAMTS8Q9UP79 889 aa18.09■□□□□ 0.49
USH1C-209ENST00000530700 CRB1P82279 1406 aa18.08■□□□□ 0.49
USH1C-209ENST00000530700 TCP11L2Q8N4U5 519 aa18.08■□□□□ 0.48
USH1C-209ENST00000530700 RAPGEF4Q8WZA2 1011 aa18.08■□□□□ 0.48
USH1C-209ENST00000530700 SPATA31A5Q5VU36 1347 aa18.07■□□□□ 0.48
USH1C-209ENST00000530700 SPATA31A7Q8IWB4 1347 aa18.07■□□□□ 0.48
USH1C-209ENST00000530700 BCL9LQ86UU0 1499 aa18.07■□□□□ 0.48
USH1C-209ENST00000530700 SPATA31A1Q5TZJ5 1347 aa18.06■□□□□ 0.48
USH1C-209ENST00000530700 HMOX1P09601 288 aa18.06■□□□□ 0.48
USH1C-209ENST00000530700 TATP17735 454 aaPredicted RBP18.06■□□□□ 0.48
USH1C-209ENST00000530700 GJD4Q96KN9 370 aaPredicted RBP18.06■□□□□ 0.48
USH1C-209ENST00000530700 USP35Q9P2H5 1018 aa18.06■□□□□ 0.48
USH1C-209ENST00000530700 COL3A1P02461 1466 aaPredicted RBP18.06■□□□□ 0.48
USH1C-209ENST00000530700 ABCA3Q99758 1704 aa18.06■□□□□ 0.48
USH1C-209ENST00000530700 IL2RBP14784 551 aa18.05■□□□□ 0.48
USH1C-209ENST00000530700 AMOTQ4VCS5 1084 aa18.05■□□□□ 0.48
USH1C-209ENST00000530700 BARGINQ6ZT62 677 aa18.05■□□□□ 0.48
USH1C-209ENST00000530700 COL18A1P39060 1754 aa18.04■□□□□ 0.48
USH1C-209ENST00000530700 PEAK1Q9H792 1746 aa18.04■□□□□ 0.48
USH1C-209ENST00000530700 PLEKHO1Q53GL0 409 aaPredicted RBP18.04■□□□□ 0.48
USH1C-209ENST00000530700 RUNDC1Q96C34 613 aa18.04■□□□□ 0.48
USH1C-209ENST00000530700 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.04■□□□□ 0.48
USH1C-209ENST00000530700 USHBP1Q8N6Y0 703 aa18.03■□□□□ 0.48
USH1C-209ENST00000530700 RSPH6AQ9H0K4 717 aa18.03■□□□□ 0.48
USH1C-209ENST00000530700 LTN1O94822 1766 aa18.03■□□□□ 0.48
USH1C-209ENST00000530700 KDRP35968 1356 aa18.03■□□□□ 0.48
USH1C-209ENST00000530700 PLEKHG2Q9H7P9 1386 aa18.03■□□□□ 0.48
USH1C-209ENST00000530700 LMO7Q8WWI1 1683 aa18.03■□□□□ 0.48
USH1C-209ENST00000530700 MAPK8IP3Q9UPT6 1336 aa18.02■□□□□ 0.48
USH1C-209ENST00000530700 PRKAR2BP31323 418 aa18.02■□□□□ 0.48
USH1C-209ENST00000530700 SPG7Q9UQ90 795 aa18.02■□□□□ 0.48
USH1C-209ENST00000530700 EXOC5O00471 708 aa18.01■□□□□ 0.47
USH1C-209ENST00000530700 RBM6P78332 1123 aaKnown RBP18.01■□□□□ 0.47
USH1C-209ENST00000530700 AEBP1Q8IUX7 1158 aa18.01■□□□□ 0.47
USH1C-209ENST00000530700 ONECUT3O60422 494 aaPredicted RBP18■□□□□ 0.47
USH1C-209ENST00000530700 NGEFQ8N5V2 710 aa18■□□□□ 0.47
USH1C-209ENST00000530700 GAS2L2Q8NHY3 880 aa18■□□□□ 0.47
USH1C-209ENST00000530700 PLEKHF1Q96S99 279 aa18■□□□□ 0.47
USH1C-209ENST00000530700 RXRBP28702 533 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms