RNA–Protein interactions for RNA: ENST00000530520.5

ME3-209, Transcript of malic enzyme 3, human

TSL 5

Gene ME3, Length 1,573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ME3-209	ENST00000530520	CCDC184	Q52MB2	194 aa		33.29	■■■□□ 2.92
ME3-209	ENST00000530520	RGPD5	Q99666	1765 aa		33.28	■■■□□ 2.92
ME3-209	ENST00000530520	ADAMTS2	O95450	1211 aa		33.28	■■■□□ 2.92
ME3-209	ENST00000530520	COL18A1	P39060	1754 aa		33.28	■■■□□ 2.92
ME3-209	ENST00000530520	ABCC6	O95255	1503 aa		33.27	■■■□□ 2.92
ME3-209	ENST00000530520	IP6K1	Q92551	441 aa		33.26	■■■□□ 2.92
ME3-209	ENST00000530520	COL14A1	Q05707	1796 aa	Known RBP	33.26	■■■□□ 2.91
ME3-209	ENST00000530520	HSP90AB2P	Q58FF8	381 aa		33.26	■■■□□ 2.91
ME3-209	ENST00000530520	COL3A1	P02461	1466 aa	Predicted RBP	33.25	■■■□□ 2.91
ME3-209	ENST00000530520	LRP6	O75581	1613 aa		33.24	■■■□□ 2.91
ME3-209	ENST00000530520	LMO7	Q8WWI1	1683 aa		33.23	■■■□□ 2.91
ME3-209	ENST00000530520	BLM	P54132	1417 aa	Predicted RBP	33.23	■■■□□ 2.91
ME3-209	ENST00000530520	INSR	P06213	1382 aa		33.23	■■■□□ 2.91
ME3-209	ENST00000530520	FAM83G	A6ND36	823 aa		33.21	■■■□□ 2.91
ME3-209	ENST00000530520	PLCH1	Q4KWH8	1693 aa		33.2	■■■□□ 2.91
ME3-209	ENST00000530520	DIAPH1	O60610	1272 aa	Known RBP	33.2	■■■□□ 2.91
ME3-209	ENST00000530520	AXIN2	Q9Y2T1	843 aa		33.2	■■■□□ 2.91
ME3-209	ENST00000530520	LTV1	Q96GA3	475 aa	Predicted RBP	33.17	■■■□□ 2.9
ME3-209	ENST00000530520	CAMTA1	Q9Y6Y1	1673 aa		33.17	■■■□□ 2.9
ME3-209	ENST00000530520	EIF4A2	Q14240	407 aa	Known RBP	33.16	■■■□□ 2.9
ME3-209	ENST00000530520	MEX3C	Q5U5Q3	659 aa	Known RBP	33.16	■■■□□ 2.9
ME3-209	ENST00000530520	NUDC	Q9Y266	331 aa		33.14	■■■□□ 2.9
ME3-209	ENST00000530520	ANKRD24	Q8TF21	1146 aa		33.13	■■■□□ 2.89
ME3-209	ENST00000530520	IL13	P35225	146 aa		33.13	■■■□□ 2.89
ME3-209	ENST00000530520	C8orf37	Q96NL8	207 aa		33.13	■■■□□ 2.89
ME3-209	ENST00000530520	NWD2	Q9ULI1	1742 aa		33.12	■■■□□ 2.89
ME3-209	ENST00000530520	WDR43	Q15061	677 aa	Known RBP eCLIP	33.12	■■■□□ 2.89
ME3-209	ENST00000530520	BTG4	Q9NY30	223 aa		33.12	■■■□□ 2.89
ME3-209	ENST00000530520	ERBB3	P21860	1342 aa		33.11	■■■□□ 2.89
ME3-209	ENST00000530520	COL5A2	P05997	1499 aa	Predicted RBP	33.11	■■■□□ 2.89
ME3-209	ENST00000530520	U2SURP	O15042	1029 aa	Known RBP	33.11	■■■□□ 2.89
ME3-209	ENST00000530520	FAM208A	Q9UK61	1670 aa	Known RBP	33.11	■■■□□ 2.89
ME3-209	ENST00000530520	RGPD2	P0DJD1	1756 aa		33.1	■■■□□ 2.89
ME3-209	ENST00000530520	CSB-PGBD3	P0DP91	1061 aa		33.09	■■■□□ 2.89
ME3-209	ENST00000530520	NGLY1	Q96IV0	654 aa		33.09	■■■□□ 2.89
ME3-209	ENST00000530520	PNISR	Q8TF01	805 aa	Known RBP	33.09	■■■□□ 2.89
ME3-209	ENST00000530520	STRN4	Q9NRL3	753 aa		33.08	■■■□□ 2.89
ME3-209	ENST00000530520	RGPD1	P0DJD0	1748 aa		33.08	■■■□□ 2.89
ME3-209	ENST00000530520	NRAP	Q86VF7	1730 aa		33.08	■■■□□ 2.89
ME3-209	ENST00000530520	EVA1C	P58658	441 aa		33.07	■■■□□ 2.88
ME3-209	ENST00000530520	SLIT2	O94813	1529 aa		33.06	■■■□□ 2.88
ME3-209	ENST00000530520	FAM9B	Q8IZU0	186 aa		33.06	■■■□□ 2.88
ME3-209	ENST00000530520	U2AF1L5	P0DN76	240 aa	Predicted RBP	33.05	■■■□□ 2.88
ME3-209	ENST00000530520	U2AF1	Q01081	240 aa	Known RBP eCLIP	33.05	■■■□□ 2.88
ME3-209	ENST00000530520	WDR17	Q8IZU2	1322 aa		33.04	■■■□□ 2.88
ME3-209	ENST00000530520	EYA1	Q99502	592 aa		33.03	■■■□□ 2.88
ME3-209	ENST00000530520	NLRP2	Q9NX02	1062 aa		33.01	■■■□□ 2.88
ME3-209	ENST00000530520	IGSF1	Q8N6C5	1336 aa		33.01	■■■□□ 2.87
ME3-209	ENST00000530520	NBPF6	Q5VWK0	638 aa		33	■■■□□ 2.87
ME3-209	ENST00000530520	TOM1L2	Q6ZVM7	507 aa		33	■■■□□ 2.87
ME3-209	ENST00000530520	NBPF4	Q96M43	638 aa		33	■■■□□ 2.87
ME3-209	ENST00000530520	ADAMTS8	Q9UP79	889 aa		33	■■■□□ 2.87
ME3-209	ENST00000530520	LARP1	Q6PKG0	1096 aa	Known RBP	32.99	■■■□□ 2.87
ME3-209	ENST00000530520	ILDR1	Q86SU0	546 aa	Predicted RBP	32.99	■■■□□ 2.87
ME3-209	ENST00000530520	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	32.98	■■■□□ 2.87
ME3-209	ENST00000530520	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.98	■■■□□ 2.87
ME3-209	ENST00000530520	HMOX1	P09601	288 aa		32.97	■■■□□ 2.87
ME3-209	ENST00000530520	USHBP1	Q8N6Y0	703 aa		32.97	■■■□□ 2.87
ME3-209	ENST00000530520	SULT6B1	Q6IMI4	303 aa		32.96	■■■□□ 2.87
ME3-209	ENST00000530520	CRB1	P82279	1406 aa		32.96	■■■□□ 2.87
ME3-209	ENST00000530520	BCL9L	Q86UU0	1499 aa		32.96	■■■□□ 2.87
ME3-209	ENST00000530520	AFF2	P51816	1311 aa		32.96	■■■□□ 2.87
ME3-209	ENST00000530520	UNC5CL	Q8IV45	518 aa		32.96	■■■□□ 2.87
ME3-209	ENST00000530520	USP21	Q9UK80	565 aa		32.96	■■■□□ 2.87
ME3-209	ENST00000530520	AEBP1	Q8IUX7	1158 aa		32.94	■■■□□ 2.86
ME3-209	ENST00000530520	NCAPD2	Q15021	1401 aa		32.92	■■■□□ 2.86
ME3-209	ENST00000530520	KDR	P35968	1356 aa		32.92	■■■□□ 2.86
ME3-209	ENST00000530520	FCHSD2	O94868	740 aa		32.91	■■■□□ 2.86
ME3-209	ENST00000530520	CARD10	Q9BWT7	1032 aa		32.91	■■■□□ 2.86
ME3-209	ENST00000530520	RSPH6A	Q9H0K4	717 aa		32.9	■■■□□ 2.86
ME3-209	ENST00000530520	USP35	Q9P2H5	1018 aa		32.9	■■■□□ 2.86
ME3-209	ENST00000530520	CCDC9	Q9Y3X0	531 aa	Known RBP	32.89	■■■□□ 2.86
ME3-209	ENST00000530520	PRKAR2B	P31323	418 aa		32.88	■■■□□ 2.85
ME3-209	ENST00000530520	PNN	Q9H307	717 aa	Known RBP	32.88	■■■□□ 2.85
ME3-209	ENST00000530520	CCDC146	Q8IYE0	955 aa		32.87	■■■□□ 2.85
ME3-209	ENST00000530520	VPS72	Q15906	364 aa		32.85	■■■□□ 2.85
ME3-209	ENST00000530520	NEFM	P07197	916 aa		32.83	■■■□□ 2.85
ME3-209	ENST00000530520	SPATA31A1	Q5TZJ5	1347 aa		32.83	■■■□□ 2.85
ME3-209	ENST00000530520	SPATA31A5	Q5VU36	1347 aa		32.83	■■■□□ 2.85
ME3-209	ENST00000530520	SPATA31A7	Q8IWB4	1347 aa		32.83	■■■□□ 2.85
ME3-209	ENST00000530520	WNK3	Q9BYP7	1800 aa		32.83	■■■□□ 2.85
ME3-209	ENST00000530520	RAPGEF4	Q8WZA2	1011 aa		32.83	■■■□□ 2.85
ME3-209	ENST00000530520	RUNDC1	Q96C34	613 aa		32.83	■■■□□ 2.85
ME3-209	ENST00000530520	MAPK8IP3	Q9UPT6	1336 aa		32.83	■■■□□ 2.85
ME3-209	ENST00000530520	PARP4	Q9UKK3	1724 aa	Known RBP	32.82	■■■□□ 2.84
ME3-209	ENST00000530520	TCP11L2	Q8N4U5	519 aa		32.81	■■■□□ 2.84
ME3-209	ENST00000530520	PLEKHF1	Q96S99	279 aa		32.81	■■■□□ 2.84
ME3-209	ENST00000530520	TRPC5	Q9UL62	973 aa	Predicted RBP	32.8	■■■□□ 2.84
ME3-209	ENST00000530520	ATRN	O75882	1429 aa		32.8	■■■□□ 2.84
ME3-209	ENST00000530520	MEGF6	O75095	1541 aa		32.79	■■■□□ 2.84
ME3-209	ENST00000530520	TAT	P17735	454 aa	Predicted RBP	32.78	■■■□□ 2.84
ME3-209	ENST00000530520	THRAP3	Q9Y2W1	955 aa	Known RBP	32.78	■■■□□ 2.84
ME3-209	ENST00000530520	IL2RB	P14784	551 aa		32.77	■■■□□ 2.84
ME3-209	ENST00000530520	ZNF772	Q68DY9	489 aa	Predicted RBP	32.77	■■■□□ 2.84
ME3-209	ENST00000530520	PHACTR3	Q96KR7	559 aa		32.76	■■■□□ 2.84
ME3-209	ENST00000530520	QTRT2	Q9H974	415 aa	Known RBP	32.75	■■■□□ 2.83
ME3-209	ENST00000530520	PHF23	Q9BUL5	403 aa	Predicted RBP	32.74	■■■□□ 2.83
ME3-209	ENST00000530520	GLI3	P10071	1580 aa		32.73	■■■□□ 2.83
ME3-209	ENST00000530520	OVOS2	A0A0G2JMS6	1433 aa		32.73	■■■□□ 2.83
ME3-209	ENST00000530520	GJD4	Q96KN9	370 aa	Predicted RBP	32.73	■■■□□ 2.83

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms