RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 CPSF1Q10570 1443 aaKnown RBP17.25■□□□□ 0.35
USH1C-208ENST00000529563 CDCA7Q9BWT1 371 aaPredicted RBP17.25■□□□□ 0.35
USH1C-208ENST00000529563 PIK3C2AO00443 1686 aa17.25■□□□□ 0.35
USH1C-208ENST00000529563 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.24■□□□□ 0.35
USH1C-208ENST00000529563 TMC1Q8TDI8 760 aa17.24■□□□□ 0.35
USH1C-208ENST00000529563 CARD11Q9BXL7 1154 aa17.24■□□□□ 0.35
USH1C-208ENST00000529563 AXIN2Q9Y2T1 843 aa17.23■□□□□ 0.35
USH1C-208ENST00000529563 HDGFL2Q7Z4V5 671 aaPredicted RBP17.22■□□□□ 0.35
USH1C-208ENST00000529563 ARHGEF25Q86VW2 580 aa17.22■□□□□ 0.35
USH1C-208ENST00000529563 PCGF6Q9BYE7 350 aa17.22■□□□□ 0.35
USH1C-208ENST00000529563 RREB1Q92766 1687 aa17.22■□□□□ 0.35
USH1C-208ENST00000529563 EXOC5O00471 708 aa17.21■□□□□ 0.35
USH1C-208ENST00000529563 CARD10Q9BWT7 1032 aa17.21■□□□□ 0.35
USH1C-208ENST00000529563 SPON1Q9HCB6 807 aa17.21■□□□□ 0.35
USH1C-208ENST00000529563 NUP188Q5SRE5 1749 aa17.21■□□□□ 0.35
USH1C-208ENST00000529563 LRRC37A3O60309 1634 aa17.21■□□□□ 0.35
USH1C-208ENST00000529563 TONSLQ96HA7 1378 aa17.2■□□□□ 0.34
USH1C-208ENST00000529563 DCAF8L1A6NGE4 600 aa17.2■□□□□ 0.34
USH1C-208ENST00000529563 BCL11BQ9C0K0 894 aaPredicted RBP17.2■□□□□ 0.34
USH1C-208ENST00000529563 AKAP12Q02952 1782 aa17.2■□□□□ 0.34
USH1C-208ENST00000529563 MARCH10Q8NA82 808 aaPredicted RBP17.18■□□□□ 0.34
USH1C-208ENST00000529563 NLRP2Q9NX02 1062 aa17.18■□□□□ 0.34
USH1C-208ENST00000529563 CCDC7Q96M83 1385 aa17.17■□□□□ 0.34
USH1C-208ENST00000529563 PLSCR1O15162 318 aa17.17■□□□□ 0.34
USH1C-208ENST00000529563 COL18A1P39060 1754 aa17.17■□□□□ 0.34
USH1C-208ENST00000529563 KCNQ2O43526 872 aa17.16■□□□□ 0.34
USH1C-208ENST00000529563 NME9Q86XW9 330 aa17.16■□□□□ 0.34
USH1C-208ENST00000529563 TERF2IPQ9NYB0 399 aa17.16■□□□□ 0.34
USH1C-208ENST00000529563 WNK3Q9BYP7 1800 aa17.15■□□□□ 0.34
USH1C-208ENST00000529563 PEAK1Q9H792 1746 aa17.15■□□□□ 0.34
USH1C-208ENST00000529563 RGPD5Q99666 1765 aa17.15■□□□□ 0.34
USH1C-208ENST00000529563 NFAT5O94916 1531 aa17.14■□□□□ 0.33
USH1C-208ENST00000529563 SBNO2Q9Y2G9 1366 aa17.14■□□□□ 0.33
USH1C-208ENST00000529563 PTF1AQ7RTS3 328 aa17.13■□□□□ 0.33
USH1C-208ENST00000529563 SLC12A5Q9H2X9 1139 aa17.13■□□□□ 0.33
USH1C-208ENST00000529563 STK32BQ9NY57 414 aa17.13■□□□□ 0.33
USH1C-208ENST00000529563 MON2Q7Z3U7 1717 aa17.13■□□□□ 0.33
USH1C-208ENST00000529563 SBF2Q86WG5 1849 aa17.12■□□□□ 0.33
USH1C-208ENST00000529563 ABCC6O95255 1503 aa17.11■□□□□ 0.33
USH1C-208ENST00000529563 RGPD3A6NKT7 1758 aaPredicted RBP17.11■□□□□ 0.33
USH1C-208ENST00000529563 RGPD4Q7Z3J3 1758 aa17.11■□□□□ 0.33
USH1C-208ENST00000529563 ANKRD24Q8TF21 1146 aa17.11■□□□□ 0.33
USH1C-208ENST00000529563 ACSBG1Q96GR2 724 aa17.11■□□□□ 0.33
USH1C-208ENST00000529563 USP31Q70CQ4 1352 aa17.11■□□□□ 0.33
USH1C-208ENST00000529563 IL2RBP14784 551 aa17.1■□□□□ 0.33
USH1C-208ENST00000529563 TXNRD1Q16881 649 aa17.1■□□□□ 0.33
USH1C-208ENST00000529563 ANO8Q9HCE9 1232 aaPredicted RBP17.1■□□□□ 0.33
USH1C-208ENST00000529563 ERBB3P21860 1342 aa17.1■□□□□ 0.33
USH1C-208ENST00000529563 TNS2Q63HR2 1409 aa17.1■□□□□ 0.33
USH1C-208ENST00000529563 EDC4Q6P2E9 1401 aaKnown RBP17.1■□□□□ 0.33
USH1C-208ENST00000529563 ZBTB7AO95365 584 aa17.09■□□□□ 0.33
USH1C-208ENST00000529563 LTV1Q96GA3 475 aaPredicted RBP17.09■□□□□ 0.33
USH1C-208ENST00000529563 BCL9O00512 1426 aa17.09■□□□□ 0.33
USH1C-208ENST00000529563 YY1P25490 414 aa17.08■□□□□ 0.32
USH1C-208ENST00000529563 A0A1W2PP64 1363 aa17.07■□□□□ 0.32
USH1C-208ENST00000529563 NINLQ9Y2I6 1382 aa17.07■□□□□ 0.32
USH1C-208ENST00000529563 LTN1O94822 1766 aa17.07■□□□□ 0.32
USH1C-208ENST00000529563 CD163L1Q9NR16 1453 aa17.06■□□□□ 0.32
USH1C-208ENST00000529563 SLC24A1O60721 1099 aa17.06■□□□□ 0.32
USH1C-208ENST00000529563 PROM2Q8N271 834 aa17.06■□□□□ 0.32
USH1C-208ENST00000529563 COG3Q96JB2 828 aa17.06■□□□□ 0.32
USH1C-208ENST00000529563 ATF5Q9Y2D1 282 aaPredicted RBP17.06■□□□□ 0.32
USH1C-208ENST00000529563 SLC15A2Q16348 729 aa17.05■□□□□ 0.32
USH1C-208ENST00000529563 PUS7Q96PZ0 661 aaKnown RBP17.05■□□□□ 0.32
USH1C-208ENST00000529563 ST20-MTHFSA0A0A6YYL1 179 aa17.04■□□□□ 0.32
USH1C-208ENST00000529563 AMPHP49418 695 aa17.04■□□□□ 0.32
USH1C-208ENST00000529563 DDX54Q8TDD1 881 aaKnown RBP17.04■□□□□ 0.32
USH1C-208ENST00000529563 PDGFDQ9GZP0 370 aaPredicted RBP17.03■□□□□ 0.32
USH1C-208ENST00000529563 USP54Q70EL1 1684 aa17.03■□□□□ 0.32
USH1C-208ENST00000529563 KAT6BQ8WYB5 2073 aa17.03■□□□□ 0.32
USH1C-208ENST00000529563 IP6K1Q92551 441 aa17.02■□□□□ 0.32
USH1C-208ENST00000529563 SYTL4Q96C24 671 aaPredicted RBP17.02■□□□□ 0.32
USH1C-208ENST00000529563 NHSQ6T4R5 1651 aa17.01■□□□□ 0.31
USH1C-208ENST00000529563 CASZ1Q86V15 1759 aa17■□□□□ 0.31
USH1C-208ENST00000529563 MTFR1LQ9H019 292 aa17■□□□□ 0.31
USH1C-208ENST00000529563 TMF1P82094 1093 aa16.99■□□□□ 0.31
USH1C-208ENST00000529563 MAP3K19Q56UN5 1328 aa16.97■□□□□ 0.31
USH1C-208ENST00000529563 HOXC9P31274 260 aa16.97■□□□□ 0.31
USH1C-208ENST00000529563 TESK2Q96S53 571 aa16.97■□□□□ 0.31
USH1C-208ENST00000529563 PTGER2P43116 358 aa16.96■□□□□ 0.31
USH1C-208ENST00000529563 FAM208AQ9UK61 1670 aaKnown RBP16.96■□□□□ 0.31
USH1C-208ENST00000529563 BTAF1O14981 1849 aa16.96■□□□□ 0.3
USH1C-208ENST00000529563 MYOM1P52179 1685 aa16.95■□□□□ 0.3
USH1C-208ENST00000529563 ANKRD36BQ8N2N9 1353 aa16.95■□□□□ 0.3
USH1C-208ENST00000529563 CDCA8Q53HL2 280 aa16.95■□□□□ 0.3
USH1C-208ENST00000529563 KLHL34Q8N239 644 aa16.95■□□□□ 0.3
USH1C-208ENST00000529563 CCER1Q8TC90 406 aaPredicted RBP16.95■□□□□ 0.3
USH1C-208ENST00000529563 FHDC1Q9C0D6 1143 aaPredicted RBP16.95■□□□□ 0.3
USH1C-208ENST00000529563 SMG6Q86US8 1419 aaKnown RBP16.95■□□□□ 0.3
USH1C-208ENST00000529563 FBLN1P23142 703 aa16.94■□□□□ 0.3
USH1C-208ENST00000529563 SLC27A3Q5K4L6 730 aa16.94■□□□□ 0.3
USH1C-208ENST00000529563 ZCRB1Q8TBF4 217 aaKnown RBP16.94■□□□□ 0.3
USH1C-208ENST00000529563 ARXQ96QS3 562 aa16.94■□□□□ 0.3
USH1C-208ENST00000529563 GGNBP2Q9H3C7 697 aa16.94■□□□□ 0.3
USH1C-208ENST00000529563 USP47Q96K76 1375 aa16.93■□□□□ 0.3
USH1C-208ENST00000529563 PRIM1P49642 420 aaKnown RBP16.93■□□□□ 0.3
USH1C-208ENST00000529563 RRS1Q15050 365 aaKnown RBP16.93■□□□□ 0.3
USH1C-208ENST00000529563 RAPGEF4Q8WZA2 1011 aa16.93■□□□□ 0.3
USH1C-208ENST00000529563 SYT17Q9BSW7 474 aa16.93■□□□□ 0.3
USH1C-208ENST00000529563 TFCP2L1Q9NZI6 479 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms