RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 SMPD1P17405 629 aa6.05□□□□□ -1.44
CD44-229ENST00000528672 SH3BP5LQ7L8J4 393 aa6.05□□□□□ -1.44
CD44-229ENST00000528672 TRMT44Q8IYL2 757 aaKnown RBP6.05□□□□□ -1.44
CD44-229ENST00000528672 EHBP1Q8NDI1 1231 aa6.05□□□□□ -1.44
CD44-229ENST00000528672 BAP1Q92560 729 aa6.05□□□□□ -1.44
CD44-229ENST00000528672 TRIM47Q96LD4 638 aa6.05□□□□□ -1.44
CD44-229ENST00000528672 C1QTNF2Q9BXJ5 285 aa6.05□□□□□ -1.44
CD44-229ENST00000528672 SIAH2O43255 324 aa6.04□□□□□ -1.44
CD44-229ENST00000528672 FAM174AQ8TBP5 190 aa6.04□□□□□ -1.44
CD44-229ENST00000528672 ZNF592Q92610 1267 aa6.04□□□□□ -1.44
CD44-229ENST00000528672 CDK15Q96Q40 435 aa6.04□□□□□ -1.44
CD44-229ENST00000528672 SENP2Q9HC62 589 aa6.04□□□□□ -1.44
CD44-229ENST00000528672 CDV3Q9UKY7 258 aaKnown RBP6.04□□□□□ -1.44
CD44-229ENST00000528672 MAP4K5Q9Y4K4 846 aa6.04□□□□□ -1.44
CD44-229ENST00000528672 CARNS1A5YM72 827 aa6.03□□□□□ -1.44
CD44-229ENST00000528672 PIK3CDO00329 1044 aa6.03□□□□□ -1.44
CD44-229ENST00000528672 RAD21O60216 631 aa6.03□□□□□ -1.44
CD44-229ENST00000528672 FBXO45P0C2W1 286 aa6.03□□□□□ -1.44
CD44-229ENST00000528672 NDUFB9Q9Y6M9 179 aa6.03□□□□□ -1.44
CD44-229ENST00000528672 PTK2Q05397 1052 aa6.02□□□□□ -1.45
CD44-229ENST00000528672 TSGA10IPQ3SY00 556 aa6.02□□□□□ -1.45
CD44-229ENST00000528672 C4orf48Q5BLP8 95 aa6.02□□□□□ -1.45
CD44-229ENST00000528672 HDGFL1Q5TGJ6 251 aa6.02□□□□□ -1.45
CD44-229ENST00000528672 FOXJ1Q92949 421 aa6.02□□□□□ -1.45
CD44-229ENST00000528672 GLMNQ92990 594 aa6.02□□□□□ -1.45
CD44-229ENST00000528672 PRM3Q9NNZ6 103 aa6.02□□□□□ -1.45
CD44-229ENST00000528672 J3QL48 77 aa6.01□□□□□ -1.45
CD44-229ENST00000528672 KIFC2Q96AC6 838 aa6.01□□□□□ -1.45
CD44-229ENST00000528672 UCN2Q96RP3 112 aa6.01□□□□□ -1.45
CD44-229ENST00000528672 ADH1CP00326 375 aa6□□□□□ -1.45
CD44-229ENST00000528672 MCCD1P59942 119 aaPredicted RBP6□□□□□ -1.45
CD44-229ENST00000528672 CDCA8Q53HL2 280 aa6□□□□□ -1.45
CD44-229ENST00000528672 CCDC125Q86Z20 511 aa6□□□□□ -1.45
CD44-229ENST00000528672 FAM181BA6NEQ2 426 aa5.99□□□□□ -1.45
CD44-229ENST00000528672 RFX1P22670 979 aa5.99□□□□□ -1.45
CD44-229ENST00000528672 NR5A1Q13285 461 aa5.99□□□□□ -1.45
CD44-229ENST00000528672 HPS1Q92902 700 aa5.99□□□□□ -1.45
CD44-229ENST00000528672 TRIM52Q96A61 297 aa5.99□□□□□ -1.45
CD44-229ENST00000528672 ARHGAP9Q9BRR9 750 aa5.99□□□□□ -1.45
CD44-229ENST00000528672 CARD14Q9BXL6 1004 aa5.99□□□□□ -1.45
CD44-229ENST00000528672 LOC100996750A0A140TA64 210 aa5.98□□□□□ -1.45
CD44-229ENST00000528672 AGERQ15109 404 aa5.98□□□□□ -1.45
CD44-229ENST00000528672 ERFEQ4G0M1 354 aa5.98□□□□□ -1.45
CD44-229ENST00000528672 SLC16A10Q8TF71 515 aa5.98□□□□□ -1.45
CD44-229ENST00000528672 KRTAP4-6Q9BYQ5 205 aa5.98□□□□□ -1.45
CD44-229ENST00000528672 PODXL2Q9NZ53 605 aa5.98□□□□□ -1.45
CD44-229ENST00000528672 ZBBXA8MT70 800 aa5.97□□□□□ -1.45
CD44-229ENST00000528672 ALDH1A1P00352 501 aa5.97□□□□□ -1.45
CD44-229ENST00000528672 NBPF20Q3BBV1 942 aa5.97□□□□□ -1.45
CD44-229ENST00000528672 SLC10A4Q96EP9 437 aa5.97□□□□□ -1.45
CD44-229ENST00000528672 CALR3Q96L12 384 aaKnown RBP5.97□□□□□ -1.45
CD44-229ENST00000528672 ALG2Q9H553 416 aa5.97□□□□□ -1.45
CD44-229ENST00000528672 WASF2Q9Y6W5 498 aa5.97□□□□□ -1.45
CD44-229ENST00000528672 MAGEB6P1A0A0J9YX57 407 aa5.96□□□□□ -1.46
CD44-229ENST00000528672 LORP23490 312 aaPredicted RBP5.96□□□□□ -1.46
CD44-229ENST00000528672 TBC1D9Q6ZT07 1266 aa5.96□□□□□ -1.46
CD44-229ENST00000528672 ZBTB33Q86T24 672 aa5.96□□□□□ -1.46
CD44-229ENST00000528672 NXF1Q9UBU9 619 aaKnown RBP5.96□□□□□ -1.46
CD44-229ENST00000528672 TLL2Q9Y6L7 1015 aa5.96□□□□□ -1.46
CD44-229ENST00000528672 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.95□□□□□ -1.46
CD44-229ENST00000528672 GMPRP36959 345 aa5.95□□□□□ -1.46
CD44-229ENST00000528672 SEPT12Q8IYM1 358 aa5.95□□□□□ -1.46
CD44-229ENST00000528672 DEPDC4Q8N2C3 294 aa5.95□□□□□ -1.46
CD44-229ENST00000528672 ZSCAN1Q8NBB4 408 aa5.95□□□□□ -1.46
CD44-229ENST00000528672 ADAM32Q8TC27 787 aa5.95□□□□□ -1.46
CD44-229ENST00000528672 GRM5P41594 1212 aa5.94□□□□□ -1.46
CD44-229ENST00000528672 NR1H3Q13133 447 aa5.94□□□□□ -1.46
CD44-229ENST00000528672 CFAP70Q5T0N1 1121 aa5.94□□□□□ -1.46
CD44-229ENST00000528672 NPAS3Q8IXF0 933 aa5.94□□□□□ -1.46
CD44-229ENST00000528672 STAU1O95793 577 aaKnown RBP5.93□□□□□ -1.46
CD44-229ENST00000528672 RAB15P59190 212 aa5.93□□□□□ -1.46
CD44-229ENST00000528672 DHX9Q08211 1270 aaKnown RBP5.93□□□□□ -1.46
CD44-229ENST00000528672 NNTQ13423 1086 aa5.93□□□□□ -1.46
CD44-229ENST00000528672 VASH1Q7L8A9 365 aaPredicted RBP5.93□□□□□ -1.46
CD44-229ENST00000528672 IRF7Q92985 503 aa5.93□□□□□ -1.46
CD44-229ENST00000528672 TFIP11Q9UBB9 837 aaKnown RBP5.93□□□□□ -1.46
CD44-229ENST00000528672 PCDHB9Q9Y5E1 797 aa5.93□□□□□ -1.46
CD44-229ENST00000528672 ESPNB1AK53 854 aa5.92□□□□□ -1.46
CD44-229ENST00000528672 LGR5O75473 907 aa5.92□□□□□ -1.46
CD44-229ENST00000528672 WASHC4Q2M389 1173 aa5.92□□□□□ -1.46
CD44-229ENST00000528672 CDCA7Q9BWT1 371 aaPredicted RBP5.92□□□□□ -1.46
CD44-229ENST00000528672 KLF16Q9BXK1 252 aaPredicted RBP5.92□□□□□ -1.46
CD44-229ENST00000528672 EMILIN1Q9Y6C2 1016 aa5.92□□□□□ -1.46
CD44-229ENST00000528672 PALM3A6NDB9 673 aaPredicted RBP5.91□□□□□ -1.46
CD44-229ENST00000528672 GIGYF1O75420 1035 aaPredicted RBP5.91□□□□□ -1.46
CD44-229ENST00000528672 FSHRP23945 695 aa5.91□□□□□ -1.46
CD44-229ENST00000528672 SOX11P35716 441 aa5.91□□□□□ -1.46
CD44-229ENST00000528672 TRIM26Q12899 539 aaPredicted RBP5.91□□□□□ -1.46
CD44-229ENST00000528672 CCDC116Q8IYX3 515 aa5.91□□□□□ -1.46
CD44-229ENST00000528672 GAS2L2Q8NHY3 880 aa5.91□□□□□ -1.46
CD44-229ENST00000528672 CCDC85AQ96PX6 553 aaPredicted RBP5.91□□□□□ -1.46
CD44-229ENST00000528672 KCTD15Q96SI1 283 aaPredicted RBP5.91□□□□□ -1.46
CD44-229ENST00000528672 TIMP2P16035 220 aa5.9□□□□□ -1.46
CD44-229ENST00000528672 LMOD1P29536 600 aaPredicted RBP5.9□□□□□ -1.46
CD44-229ENST00000528672 SRPK2P78362 688 aaKnown RBP5.9□□□□□ -1.46
CD44-229ENST00000528672 RNF20Q5VTR2 975 aa5.9□□□□□ -1.46
CD44-229ENST00000528672 DZIP3Q86Y13 1208 aaKnown RBP5.9□□□□□ -1.46
CD44-229ENST00000528672 WWC1Q8IX03 1113 aa5.9□□□□□ -1.46
CD44-229ENST00000528672 PPP1R12CQ9BZL4 782 aa5.9□□□□□ -1.46
CD44-229ENST00000528672 PGPEP1Q9NXJ5 209 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms