RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ZFAND3Q9H8U3 227 aa8.95□□□□□ -0.98
CD44-217ENST00000525348 CAPN5O15484 640 aaPredicted RBP8.94□□□□□ -0.98
CD44-217ENST00000525348 INTS6LQ5JSJ4 861 aaKnown RBP8.94□□□□□ -0.98
CD44-217ENST00000525348 DZIP3Q86Y13 1208 aaKnown RBP8.94□□□□□ -0.98
CD44-217ENST00000525348 ITPKCQ96DU7 683 aa8.94□□□□□ -0.98
CD44-217ENST00000525348 POM121Q96HA1 1249 aa8.94□□□□□ -0.98
CD44-217ENST00000525348 ATP13A2Q9NQ11 1180 aa8.94□□□□□ -0.98
CD44-217ENST00000525348 ZIC2O95409 532 aaPredicted RBP8.93□□□□□ -0.98
CD44-217ENST00000525348 BMP1P13497 986 aa8.93□□□□□ -0.98
CD44-217ENST00000525348 TRIM46Q7Z4K8 759 aa8.93□□□□□ -0.98
CD44-217ENST00000525348 GMPR2Q9P2T1 348 aaKnown RBP8.93□□□□□ -0.98
CD44-217ENST00000525348 COG6Q9Y2V7 657 aa8.93□□□□□ -0.98
CD44-217ENST00000525348 PCDHB9Q9Y5E1 797 aa8.93□□□□□ -0.98
CD44-217ENST00000525348 CCDC116Q8IYX3 515 aa8.92□□□□□ -0.98
CD44-217ENST00000525348 CDV3Q9UKY7 258 aaKnown RBP8.92□□□□□ -0.98
CD44-217ENST00000525348 ESPNB1AK53 854 aa8.91□□□□□ -0.98
CD44-217ENST00000525348 ABL2P42684 1182 aa8.91□□□□□ -0.98
CD44-217ENST00000525348 PPP1R26Q5T8A7 1209 aaPredicted RBP8.91□□□□□ -0.98
CD44-217ENST00000525348 RAB15P59190 212 aa8.9□□□□□ -0.98
CD44-217ENST00000525348 ZNF787Q6DD87 383 aa8.9□□□□□ -0.98
CD44-217ENST00000525348 GIGYF1O75420 1035 aaPredicted RBP8.89□□□□□ -0.99
CD44-217ENST00000525348 NBPF20Q3BBV1 942 aa8.89□□□□□ -0.99
CD44-217ENST00000525348 VAC14Q08AM6 782 aa8.88□□□□□ -0.99
CD44-217ENST00000525348 FLIIQ13045 1269 aa8.88□□□□□ -0.99
CD44-217ENST00000525348 TMPRSS4Q9NRS4 437 aa8.88□□□□□ -0.99
CD44-217ENST00000525348 ERVH48-1M5A8F1 160 aa8.87□□□□□ -0.99
CD44-217ENST00000525348 CBLBQ13191 982 aa8.87□□□□□ -0.99
CD44-217ENST00000525348 PRM3Q9NNZ6 103 aa8.87□□□□□ -0.99
CD44-217ENST00000525348 EMILIN1Q9Y6C2 1016 aa8.87□□□□□ -0.99
CD44-217ENST00000525348 SNRPBP14678 240 aaKnown RBP8.86□□□□□ -0.99
CD44-217ENST00000525348 MRPL14Q6P1L8 145 aaKnown RBP8.86□□□□□ -0.99
CD44-217ENST00000525348 MEIOBQ8N635 442 aa8.86□□□□□ -0.99
CD44-217ENST00000525348 TRIM47Q96LD4 638 aa8.85□□□□□ -0.99
CD44-217ENST00000525348 LILRA1O75019 489 aa8.84□□□□□ -0.99
CD44-217ENST00000525348 UBTFP17480 764 aaKnown RBP8.84□□□□□ -0.99
CD44-217ENST00000525348 DHX9Q08211 1270 aaKnown RBP8.84□□□□□ -0.99
CD44-217ENST00000525348 ZNF784Q8NCA9 323 aaPredicted RBP8.84□□□□□ -0.99
CD44-217ENST00000525348 ZFP42Q96MM3 310 aa8.84□□□□□ -0.99
CD44-217ENST00000525348 C11orf95C9JLR9 678 aaPredicted RBP8.83□□□□□ -1
CD44-217ENST00000525348 Q6ZVU0 165 aa8.83□□□□□ -1
CD44-217ENST00000525348 SEPT12Q8IYM1 358 aa8.83□□□□□ -1
CD44-217ENST00000525348 PURBQ96QR8 312 aaKnown RBP8.83□□□□□ -1
CD44-217ENST00000525348 PGPEP1Q9NXJ5 209 aa8.83□□□□□ -1
CD44-217ENST00000525348 CEP126Q9P2H0 1117 aa8.83□□□□□ -1
CD44-217ENST00000525348 ADD1P35611 737 aaKnown RBP8.82□□□□□ -1
CD44-217ENST00000525348 MCCD1P59942 119 aaPredicted RBP8.82□□□□□ -1
CD44-217ENST00000525348 CLUAP1Q96AJ1 413 aa8.82□□□□□ -1
CD44-217ENST00000525348 ZNF330Q9Y3S2 320 aaPredicted RBP8.82□□□□□ -1
CD44-217ENST00000525348 C6orf118Q5T5N4 469 aa8.81□□□□□ -1
CD44-217ENST00000525348 LINC00528Q8N1L1 170 aa8.81□□□□□ -1
CD44-217ENST00000525348 AGBL1Q96MI9 1066 aa8.81□□□□□ -1
CD44-217ENST00000525348 CYLDQ9NQC7 956 aa8.81□□□□□ -1
CD44-217ENST00000525348 EIF4G2P78344 907 aaKnown RBP eCLIP8.8□□□□□ -1
CD44-217ENST00000525348 WASHC4Q2M389 1173 aa8.8□□□□□ -1
CD44-217ENST00000525348 TSGA10IPQ3SY00 556 aa8.8□□□□□ -1
CD44-217ENST00000525348 KDF1Q8NAX2 398 aaPredicted RBP8.8□□□□□ -1
CD44-217ENST00000525348 CCDC85AQ96PX6 553 aaPredicted RBP8.8□□□□□ -1
CD44-217ENST00000525348 SENP2Q9HC62 589 aa8.8□□□□□ -1
CD44-217ENST00000525348 POM121CA8CG34 1229 aa8.79□□□□□ -1
CD44-217ENST00000525348 SCTRP47872 440 aa8.79□□□□□ -1
CD44-217ENST00000525348 PHTF2Q8N3S3 785 aa8.79□□□□□ -1
CD44-217ENST00000525348 SOBPA7XYQ1 873 aa8.78□□□□□ -1
CD44-217ENST00000525348 RAD21O60216 631 aa8.78□□□□□ -1
CD44-217ENST00000525348 SCARF1Q14162 830 aa8.78□□□□□ -1
CD44-217ENST00000525348 KIFC2Q96AC6 838 aa8.78□□□□□ -1
CD44-217ENST00000525348 CDCA7Q9BWT1 371 aaPredicted RBP8.78□□□□□ -1
CD44-217ENST00000525348 PCDHB11Q9Y5F2 797 aa8.78□□□□□ -1
CD44-217ENST00000525348 ADH1AP07327 375 aa8.77□□□□□ -1.01
CD44-217ENST00000525348 BMP2P12643 396 aa8.77□□□□□ -1.01
CD44-217ENST00000525348 ERVK-9P63128 1117 aa8.77□□□□□ -1.01
CD44-217ENST00000525348 FNBP4Q8N3X1 1017 aaPredicted RBP8.77□□□□□ -1.01
CD44-217ENST00000525348 ADAMTS19Q8TE59 1207 aa8.77□□□□□ -1.01
CD44-217ENST00000525348 ZNF592Q92610 1267 aa8.77□□□□□ -1.01
CD44-217ENST00000525348 ZNF775Q96BV0 537 aaPredicted RBP8.77□□□□□ -1.01
CD44-217ENST00000525348 TSEN34Q9BSV6 310 aaKnown RBP8.77□□□□□ -1.01
CD44-217ENST00000525348 RELBQ01201 579 aa8.76□□□□□ -1.01
CD44-217ENST00000525348 RNF20Q5VTR2 975 aa8.76□□□□□ -1.01
CD44-217ENST00000525348 PIK3CDO00329 1044 aa8.75□□□□□ -1.01
CD44-217ENST00000525348 SPINT1O43278 529 aa8.75□□□□□ -1.01
CD44-217ENST00000525348 ALG2Q9H553 416 aa8.75□□□□□ -1.01
CD44-217ENST00000525348 CHIC2Q9UKJ5 165 aa8.75□□□□□ -1.01
CD44-217ENST00000525348 SOS2Q07890 1332 aaPredicted RBP8.75□□□□□ -1.01
CD44-217ENST00000525348 ZNF395Q9H8N7 513 aaPredicted RBP8.74□□□□□ -1.01
CD44-217ENST00000525348 UPP2O95045 317 aa8.73□□□□□ -1.01
CD44-217ENST00000525348 SOX11P35716 441 aa8.73□□□□□ -1.01
CD44-217ENST00000525348 SEMA3FQ13275 785 aa8.73□□□□□ -1.01
CD44-217ENST00000525348 CC2D2BQ6DHV5 1058 aa8.73□□□□□ -1.01
CD44-217ENST00000525348 PROSER2Q86WR7 435 aaPredicted RBP8.73□□□□□ -1.01
CD44-217ENST00000525348 CCDC125Q86Z20 511 aa8.73□□□□□ -1.01
CD44-217ENST00000525348 RNF135Q8IUD6 432 aa8.73□□□□□ -1.01
CD44-217ENST00000525348 INSM2Q96T92 566 aaPredicted RBP8.73□□□□□ -1.01
CD44-217ENST00000525348 OSBPL3Q9H4L5 887 aa8.73□□□□□ -1.01
CD44-217ENST00000525348 DNMT3LQ9UJW3 386 aa8.73□□□□□ -1.01
CD44-217ENST00000525348 TRAK2O60296 914 aa8.72□□□□□ -1.01
CD44-217ENST00000525348 PTGIRP43119 386 aa8.72□□□□□ -1.01
CD44-217ENST00000525348 CTSOP43234 321 aaPredicted RBP8.72□□□□□ -1.01
CD44-217ENST00000525348 SLFNL1Q499Z3 407 aa8.72□□□□□ -1.01
CD44-217ENST00000525348 A6NJR5 290 aa8.71□□□□□ -1.02
CD44-217ENST00000525348 DOLKQ9UPQ8 538 aa8.71□□□□□ -1.02
CD44-217ENST00000525348 WWC1Q8IX03 1113 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms