RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	KDF1	Q8NAX2	398 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-212	ENST00000524922	TRIM34	Q9BYJ4	488 aa		4.54	□□□□□ -1.68
CD44-212	ENST00000524922	ZC3H4	Q9UPT8	1303 aa	Known RBP	4.53	□□□□□ -1.68
CD44-212	ENST00000524922	GPR37L1	O60883	481 aa		4.53	□□□□□ -1.68
CD44-212	ENST00000524922	SCARF1	Q14162	830 aa		4.53	□□□□□ -1.68
CD44-212	ENST00000524922	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	4.53	□□□□□ -1.68
CD44-212	ENST00000524922	VASH1	Q7L8A9	365 aa	Predicted RBP	4.53	□□□□□ -1.68
CD44-212	ENST00000524922	IRF7	Q92985	503 aa		4.53	□□□□□ -1.68
CD44-212	ENST00000524922	BCAN	Q96GW7	911 aa		4.53	□□□□□ -1.68
CD44-212	ENST00000524922	CARD14	Q9BXL6	1004 aa		4.53	□□□□□ -1.68
CD44-212	ENST00000524922	GOPC	Q9HD26	462 aa		4.53	□□□□□ -1.68
CD44-212	ENST00000524922	USP17L8	P0C7I0	530 aa		4.52	□□□□□ -1.69
CD44-212	ENST00000524922	RFC5	P40937	340 aa		4.52	□□□□□ -1.69
CD44-212	ENST00000524922	CBLB	Q13191	982 aa		4.52	□□□□□ -1.69
CD44-212	ENST00000524922	INTS6L	Q5JSJ4	861 aa	Known RBP	4.52	□□□□□ -1.69
CD44-212	ENST00000524922	C6orf118	Q5T5N4	469 aa		4.52	□□□□□ -1.69
CD44-212	ENST00000524922	SLC16A10	Q8TF71	515 aa		4.52	□□□□□ -1.69
CD44-212	ENST00000524922	GJD4	Q96KN9	370 aa	Predicted RBP	4.52	□□□□□ -1.69
CD44-212	ENST00000524922	ARHGAP9	Q9BRR9	750 aa		4.52	□□□□□ -1.69
CD44-212	ENST00000524922	GPSM3	Q9Y4H4	160 aa		4.52	□□□□□ -1.69
CD44-212	ENST00000524922	EMILIN1	Q9Y6C2	1016 aa		4.52	□□□□□ -1.69
CD44-212	ENST00000524922	ESPN	B1AK53	854 aa		4.51	□□□□□ -1.69
CD44-212	ENST00000524922	SPINT1	O43278	529 aa		4.51	□□□□□ -1.69
CD44-212	ENST00000524922	LILRA1	O75019	489 aa		4.51	□□□□□ -1.69
CD44-212	ENST00000524922	PPFIA3	O75145	1194 aa		4.51	□□□□□ -1.69
CD44-212	ENST00000524922	AP1G2	O75843	785 aa		4.51	□□□□□ -1.69
CD44-212	ENST00000524922	KRT76	Q01546	638 aa		4.51	□□□□□ -1.69
CD44-212	ENST00000524922	ADAM32	Q8TC27	787 aa		4.51	□□□□□ -1.69
CD44-212	ENST00000524922	KCTD15	Q96SI1	283 aa	Predicted RBP	4.51	□□□□□ -1.69
CD44-212	ENST00000524922	BMP2	P12643	396 aa		4.5	□□□□□ -1.69
CD44-212	ENST00000524922	GPR161	Q8N6U8	529 aa	Known RBP	4.5	□□□□□ -1.69
CD44-212	ENST00000524922	TSEN34	Q9BSV6	310 aa	Known RBP	4.5	□□□□□ -1.69
CD44-212	ENST00000524922	MAN1A2	O60476	641 aa		4.49	□□□□□ -1.69
CD44-212	ENST00000524922	ADD1	P35611	737 aa	Known RBP	4.49	□□□□□ -1.69
CD44-212	ENST00000524922	ZSCAN1	Q8NBB4	408 aa		4.49	□□□□□ -1.69
CD44-212	ENST00000524922	SLC10A4	Q96EP9	437 aa		4.49	□□□□□ -1.69
CD44-212	ENST00000524922	CDV3	Q9UKY7	258 aa	Known RBP	4.49	□□□□□ -1.69
CD44-212	ENST00000524922	SENP3-EIF4A1	A0A087X0R7	540 aa		4.48	□□□□□ -1.69
CD44-212	ENST00000524922	TTLL8	A6PVC2	850 aa		4.48	□□□□□ -1.69
CD44-212	ENST00000524922	SLC24A1	O60721	1099 aa		4.48	□□□□□ -1.69
CD44-212	ENST00000524922	CTSO	P43234	321 aa	Predicted RBP	4.48	□□□□□ -1.69
CD44-212	ENST00000524922	GSK3A	P49840	483 aa		4.48	□□□□□ -1.69
CD44-212	ENST00000524922	BRPF1	P55201	1214 aa	Predicted RBP	4.48	□□□□□ -1.69
CD44-212	ENST00000524922	PTK2	Q05397	1052 aa		4.48	□□□□□ -1.69
CD44-212	ENST00000524922	ZNF784	Q8NCA9	323 aa	Predicted RBP	4.48	□□□□□ -1.69
CD44-212	ENST00000524922	AGBL1	Q96MI9	1066 aa		4.48	□□□□□ -1.69
CD44-212	ENST00000524922	TMPRSS4	Q9NRS4	437 aa		4.48	□□□□□ -1.69
CD44-212	ENST00000524922	SLC35F4	A4IF30	521 aa		4.47	□□□□□ -1.69
CD44-212	ENST00000524922	ERVH48-1	M5A8F1	160 aa		4.47	□□□□□ -1.69
CD44-212	ENST00000524922	PTS	Q03393	145 aa		4.47	□□□□□ -1.69
CD44-212	ENST00000524922	ZBTB33	Q86T24	672 aa		4.47	□□□□□ -1.69
CD44-212	ENST00000524922	RNF217	Q8TC41	542 aa		4.47	□□□□□ -1.69
CD44-212	ENST00000524922	NANOS1	Q8WY41	292 aa	Known RBP	4.47	□□□□□ -1.69
CD44-212	ENST00000524922	PGPEP1	Q9NXJ5	209 aa		4.47	□□□□□ -1.69
CD44-212	ENST00000524922	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	4.46	□□□□□ -1.7
CD44-212	ENST00000524922	FOXD4L5	Q5VV16	416 aa	Predicted RBP	4.46	□□□□□ -1.7
CD44-212	ENST00000524922	INSM2	Q96T92	566 aa	Predicted RBP	4.46	□□□□□ -1.7
CD44-212	ENST00000524922	FIGNL2	A6NMB9	653 aa		4.45	□□□□□ -1.7
CD44-212	ENST00000524922	SOCS7	O14512	581 aa		4.45	□□□□□ -1.7
CD44-212	ENST00000524922	UPP2	O95045	317 aa		4.45	□□□□□ -1.7
CD44-212	ENST00000524922	ADH1A	P07327	375 aa		4.45	□□□□□ -1.7
CD44-212	ENST00000524922	FBXO45	P0C2W1	286 aa		4.45	□□□□□ -1.7
CD44-212	ENST00000524922	DHX9	Q08211	1270 aa	Known RBP	4.45	□□□□□ -1.7
CD44-212	ENST00000524922	NBPF20	Q3BBV1	942 aa		4.45	□□□□□ -1.7
CD44-212	ENST00000524922	TMEM259	Q4ZIN3	620 aa		4.45	□□□□□ -1.7
CD44-212	ENST00000524922	RNFT1	Q5M7Z0	435 aa		4.45	□□□□□ -1.7
CD44-212	ENST00000524922	CCDC155	Q8N6L0	562 aa		4.45	□□□□□ -1.7
CD44-212	ENST00000524922	RELB	Q01201	579 aa		4.44	□□□□□ -1.7
CD44-212	ENST00000524922	SEPT12	Q8IYM1	358 aa		4.44	□□□□□ -1.7
CD44-212	ENST00000524922	MTMR14	Q8NCE2	650 aa		4.44	□□□□□ -1.7
CD44-212	ENST00000524922	IL27	Q8NEV9	243 aa		4.44	□□□□□ -1.7
CD44-212	ENST00000524922	ZBBX	A8MT70	800 aa		4.43	□□□□□ -1.7
CD44-212	ENST00000524922	GIGYF1	O75420	1035 aa	Predicted RBP	4.43	□□□□□ -1.7
CD44-212	ENST00000524922	ITGA6	P23229	1130 aa		4.43	□□□□□ -1.7
CD44-212	ENST00000524922	PTGIR	P43119	386 aa		4.43	□□□□□ -1.7
CD44-212	ENST00000524922	NEUROD2	Q15784	382 aa		4.43	□□□□□ -1.7
CD44-212	ENST00000524922	ZNF395	Q9H8N7	513 aa	Predicted RBP	4.43	□□□□□ -1.7
CD44-212	ENST00000524922	CUEDC1	Q9NWM3	386 aa	Predicted RBP	4.43	□□□□□ -1.7
CD44-212	ENST00000524922	DZIP3	Q86Y13	1208 aa	Known RBP	4.42	□□□□□ -1.7
CD44-212	ENST00000524922	PCMTD1	Q96MG8	357 aa	Predicted RBP	4.42	□□□□□ -1.7
CD44-212	ENST00000524922	SLURP2	P0DP57	97 aa		4.41	□□□□□ -1.7
CD44-212	ENST00000524922	SCTR	P47872	440 aa		4.41	□□□□□ -1.7
CD44-212	ENST00000524922	RNF144A	P50876	292 aa	Predicted RBP	4.41	□□□□□ -1.7
CD44-212	ENST00000524922	ERVK-9	P63128	1117 aa		4.41	□□□□□ -1.7
CD44-212	ENST00000524922	BANK1	Q8NDB2	785 aa		4.41	□□□□□ -1.7
CD44-212	ENST00000524922	COL25A1	Q9BXS0	654 aa	Predicted RBP	4.41	□□□□□ -1.7
CD44-212	ENST00000524922	CYLD	Q9NQC7	956 aa		4.41	□□□□□ -1.7
CD44-212	ENST00000524922	SNRK	Q9NRH2	765 aa		4.41	□□□□□ -1.7
CD44-212	ENST00000524922	TRAK2	O60296	914 aa		4.4	□□□□□ -1.71
CD44-212	ENST00000524922	ARHGEF15	O94989	841 aa		4.4	□□□□□ -1.71
CD44-212	ENST00000524922	RAB15	P59190	212 aa		4.4	□□□□□ -1.71
CD44-212	ENST00000524922	GAS6	Q14393	721 aa		4.4	□□□□□ -1.71
CD44-212	ENST00000524922	WHAMM	Q8TF30	809 aa		4.4	□□□□□ -1.71
CD44-212	ENST00000524922	CNTNAP3B	Q96NU0	1288 aa		4.4	□□□□□ -1.71
CD44-212	ENST00000524922	CNTNAP3	Q9BZ76	1288 aa		4.4	□□□□□ -1.71
CD44-212	ENST00000524922	FAM181B	A6NEQ2	426 aa		4.39	□□□□□ -1.71
CD44-212	ENST00000524922	KCNMA1	Q12791	1236 aa		4.39	□□□□□ -1.71
CD44-212	ENST00000524922	NR1H3	Q13133	447 aa		4.39	□□□□□ -1.71
CD44-212	ENST00000524922	ZNF385C	Q66K41	422 aa	Predicted RBP	4.39	□□□□□ -1.71
CD44-212	ENST00000524922	VWA5B2	Q8N398	1253 aa		4.39	□□□□□ -1.71

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