RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 FHDC1Q9C0D6 1143 aaPredicted RBP16.99■□□□□ 0.31
SDCBP-211ENST00000523441 STK32BQ9NY57 414 aa16.99■□□□□ 0.31
SDCBP-211ENST00000523441 CHD4Q14839 1912 aa16.99■□□□□ 0.31
SDCBP-211ENST00000523441 PLEKHG3A1L390 1219 aa16.98■□□□□ 0.31
SDCBP-211ENST00000523441 PROM2Q8N271 834 aa16.98■□□□□ 0.31
SDCBP-211ENST00000523441 CSB-PGBD3P0DP91 1061 aa16.97■□□□□ 0.31
SDCBP-211ENST00000523441 PTGER2P43116 358 aa16.97■□□□□ 0.31
SDCBP-211ENST00000523441 KLHL34Q8N239 644 aa16.97■□□□□ 0.31
SDCBP-211ENST00000523441 MARCH10Q8NA82 808 aaPredicted RBP16.97■□□□□ 0.31
SDCBP-211ENST00000523441 C11orf95C9JLR9 678 aaPredicted RBP16.96■□□□□ 0.31
SDCBP-211ENST00000523441 TXNRD1Q16881 649 aa16.96■□□□□ 0.31
SDCBP-211ENST00000523441 SYT17Q9BSW7 474 aa16.95■□□□□ 0.3
SDCBP-211ENST00000523441 KAT6BQ8WYB5 2073 aa16.95■□□□□ 0.3
SDCBP-211ENST00000523441 PELP1Q8IZL8 1130 aaKnown RBP16.94■□□□□ 0.3
SDCBP-211ENST00000523441 AXIN2Q9Y2T1 843 aa16.94■□□□□ 0.3
SDCBP-211ENST00000523441 QRICH2Q9H0J4 1663 aa16.94■□□□□ 0.3
SDCBP-211ENST00000523441 COL18A1P39060 1754 aa16.93■□□□□ 0.3
SDCBP-211ENST00000523441 UTRNP46939 3433 aa16.93■□□□□ 0.3
SDCBP-211ENST00000523441 SLC15A2Q16348 729 aa16.93■□□□□ 0.3
SDCBP-211ENST00000523441 NBPF1Q3BBV0 1214 aa16.93■□□□□ 0.3
SDCBP-211ENST00000523441 ACSBG1Q96GR2 724 aa16.93■□□□□ 0.3
SDCBP-211ENST00000523441 CABP1Q9NZU7 370 aa16.93■□□□□ 0.3
SDCBP-211ENST00000523441 PIK3C2AO00443 1686 aa16.92■□□□□ 0.3
SDCBP-211ENST00000523441 AATKQ6ZMQ8 1374 aa16.91■□□□□ 0.3
SDCBP-211ENST00000523441 C1QTNF8P60827 252 aa16.91■□□□□ 0.3
SDCBP-211ENST00000523441 WDR17Q8IZU2 1322 aa16.91■□□□□ 0.3
SDCBP-211ENST00000523441 MTFR1LQ9H019 292 aa16.9■□□□□ 0.3
SDCBP-211ENST00000523441 SLIT3O75094 1523 aa16.9■□□□□ 0.3
SDCBP-211ENST00000523441 USP6P35125 1406 aa16.89■□□□□ 0.29
SDCBP-211ENST00000523441 EXOC5O00471 708 aa16.89■□□□□ 0.29
SDCBP-211ENST00000523441 GPR162Q16538 588 aa16.89■□□□□ 0.29
SDCBP-211ENST00000523441 CENPJQ9HC77 1338 aaPredicted RBP16.89■□□□□ 0.29
SDCBP-211ENST00000523441 KIAA1210Q9ULL0 1709 aa16.88■□□□□ 0.29
SDCBP-211ENST00000523441 ARXQ96QS3 562 aa16.88■□□□□ 0.29
SDCBP-211ENST00000523441 CPSF1Q10570 1443 aaKnown RBP16.87■□□□□ 0.29
SDCBP-211ENST00000523441 STAC3Q96MF2 364 aa16.87■□□□□ 0.29
SDCBP-211ENST00000523441 NHSQ6T4R5 1651 aa16.85■□□□□ 0.29
SDCBP-211ENST00000523441 CDCA7Q9BWT1 371 aaPredicted RBP16.85■□□□□ 0.29
SDCBP-211ENST00000523441 BTAF1O14981 1849 aa16.84■□□□□ 0.29
SDCBP-211ENST00000523441 CARD10Q9BWT7 1032 aa16.84■□□□□ 0.29
SDCBP-211ENST00000523441 GIGYF1O75420 1035 aaPredicted RBP16.83■□□□□ 0.28
SDCBP-211ENST00000523441 SGIP1Q9BQI5 828 aa16.83■□□□□ 0.28
SDCBP-211ENST00000523441 ZNF827Q17R98 1081 aa16.82■□□□□ 0.28
SDCBP-211ENST00000523441 ARHGEF25Q86VW2 580 aa16.82■□□□□ 0.28
SDCBP-211ENST00000523441 NLRP2Q9NX02 1062 aa16.82■□□□□ 0.28
SDCBP-211ENST00000523441 TNS2Q63HR2 1409 aa16.81■□□□□ 0.28
SDCBP-211ENST00000523441 BRD4O60885 1362 aaPredicted RBP16.81■□□□□ 0.28
SDCBP-211ENST00000523441 TTC21BQ7Z4L5 1316 aa16.8■□□□□ 0.28
SDCBP-211ENST00000523441 KCNH5Q8NCM2 988 aa16.8■□□□□ 0.28
SDCBP-211ENST00000523441 PAPPAQ13219 1627 aa16.79■□□□□ 0.28
SDCBP-211ENST00000523441 LTN1O94822 1766 aa16.79■□□□□ 0.28
SDCBP-211ENST00000523441 BCL9O00512 1426 aa16.79■□□□□ 0.28
SDCBP-211ENST00000523441 CCDC7Q96M83 1385 aa16.78■□□□□ 0.28
SDCBP-211ENST00000523441 TRPM1Q7Z4N2 1603 aa16.78■□□□□ 0.28
SDCBP-211ENST00000523441 KCNQ4P56696 695 aa16.78■□□□□ 0.28
SDCBP-211ENST00000523441 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.78■□□□□ 0.28
SDCBP-211ENST00000523441 EVC2Q86UK5 1308 aa16.77■□□□□ 0.28
SDCBP-211ENST00000523441 POLD1P28340 1107 aa16.77■□□□□ 0.28
SDCBP-211ENST00000523441 IFFO2Q5TF58 517 aa16.77■□□□□ 0.28
SDCBP-211ENST00000523441 LRRC4BQ9NT99 713 aa16.77■□□□□ 0.28
SDCBP-211ENST00000523441 TUBGCP6Q96RT7 1819 aa16.77■□□□□ 0.27
SDCBP-211ENST00000523441 NFAT5O94916 1531 aa16.76■□□□□ 0.27
SDCBP-211ENST00000523441 MSH5O43196 834 aa16.76■□□□□ 0.27
SDCBP-211ENST00000523441 NLGN2Q8NFZ4 835 aa16.76■□□□□ 0.27
SDCBP-211ENST00000523441 KTN1Q86UP2 1357 aaKnown RBP16.76■□□□□ 0.27
SDCBP-211ENST00000523441 ABCC6O95255 1503 aa16.75■□□□□ 0.27
SDCBP-211ENST00000523441 DDX54Q8TDD1 881 aaKnown RBP16.75■□□□□ 0.27
SDCBP-211ENST00000523441 SYTL4Q96C24 671 aaPredicted RBP16.75■□□□□ 0.27
SDCBP-211ENST00000523441 SHANK3Q9BYB0 1731 aa16.74■□□□□ 0.27
SDCBP-211ENST00000523441 IL2RBP14784 551 aa16.74■□□□□ 0.27
SDCBP-211ENST00000523441 TFCP2L1Q9NZI6 479 aa16.73■□□□□ 0.27
SDCBP-211ENST00000523441 LTV1Q96GA3 475 aaPredicted RBP16.72■□□□□ 0.27
SDCBP-211ENST00000523441 ZNF692Q9BU19 519 aaPredicted RBP16.72■□□□□ 0.27
SDCBP-211ENST00000523441 MAP3K5Q99683 1374 aa16.72■□□□□ 0.27
SDCBP-211ENST00000523441 GOLGB1Q14789 3259 aaKnown RBP16.72■□□□□ 0.27
SDCBP-211ENST00000523441 TTC21AQ8NDW8 1320 aa16.71■□□□□ 0.27
SDCBP-211ENST00000523441 NME9Q86XW9 330 aa16.71■□□□□ 0.27
SDCBP-211ENST00000523441 ANKRD24Q8TF21 1146 aa16.71■□□□□ 0.27
SDCBP-211ENST00000523441 ERBB3P21860 1342 aa16.7■□□□□ 0.26
SDCBP-211ENST00000523441 PNPLA7Q6ZV29 1317 aa16.7■□□□□ 0.26
SDCBP-211ENST00000523441 MON2Q7Z3U7 1717 aa16.7■□□□□ 0.26
SDCBP-211ENST00000523441 ZNF526Q8TF50 670 aaPredicted RBP16.7■□□□□ 0.26
SDCBP-211ENST00000523441 AKT1S1Q96B36 256 aa16.7■□□□□ 0.26
SDCBP-211ENST00000523441 QSER1Q2KHR3 1735 aa16.7■□□□□ 0.26
SDCBP-211ENST00000523441 DOT1LQ8TEK3 1739 aa16.7■□□□□ 0.26
SDCBP-211ENST00000523441 YBX3P16989 372 aaKnown RBP eCLIP16.69■□□□□ 0.26
SDCBP-211ENST00000523441 MSL1Q68DK7 614 aa16.69■□□□□ 0.26
SDCBP-211ENST00000523441 TMC1Q8TDI8 760 aa16.68■□□□□ 0.26
SDCBP-211ENST00000523441 WWC3Q9ULE0 1092 aa16.68■□□□□ 0.26
SDCBP-211ENST00000523441 CEP350Q5VT06 3117 aa16.68■□□□□ 0.26
SDCBP-211ENST00000523441 SLC16A10Q8TF71 515 aa16.67■□□□□ 0.26
SDCBP-211ENST00000523441 PRIM1P49642 420 aaKnown RBP16.66■□□□□ 0.26
SDCBP-211ENST00000523441 L3MBTL2Q969R5 705 aa16.66■□□□□ 0.26
SDCBP-211ENST00000523441 ROCK2O75116 1388 aaKnown RBP16.65■□□□□ 0.26
SDCBP-211ENST00000523441 RGPD2P0DJD1 1756 aa16.65■□□□□ 0.26
SDCBP-211ENST00000523441 COL24A1Q17RW2 1714 aa16.65■□□□□ 0.26
SDCBP-211ENST00000523441 ATP10DQ9P241 1426 aa16.64■□□□□ 0.25
SDCBP-211ENST00000523441 SLC27A3Q5K4L6 730 aa16.64■□□□□ 0.25
SDCBP-211ENST00000523441 LY75O60449 1722 aa16.63■□□□□ 0.25
SDCBP-211ENST00000523441 NEUROD1Q13562 356 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms