RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, human

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCBP-210	ENST00000522843	ZBTB24	O43167	697 aa	Predicted RBP	11.33	□□□□□ -0.6
SDCBP-210	ENST00000522843	RANGAP1	P46060	587 aa	Predicted RBP	11.33	□□□□□ -0.6
SDCBP-210	ENST00000522843	NLRP7	Q8WX94	980 aa		11.33	□□□□□ -0.6
SDCBP-210	ENST00000522843	KDM2A	Q9Y2K7	1162 aa		11.33	□□□□□ -0.6
SDCBP-210	ENST00000522843	ABCA6	Q8N139	1617 aa		11.33	□□□□□ -0.6
SDCBP-210	ENST00000522843	SMCP	P49901	116 aa	Predicted RBP	11.32	□□□□□ -0.6
SDCBP-210	ENST00000522843	ZNF518A	Q6AHZ1	1483 aa		11.32	□□□□□ -0.6
SDCBP-210	ENST00000522843	HSPA1L	P34931	641 aa		11.31	□□□□□ -0.6
SDCBP-210	ENST00000522843	EFCAB2	Q5VUJ9	269 aa		11.31	□□□□□ -0.6
SDCBP-210	ENST00000522843	PRDM9	Q9NQV7	894 aa		11.31	□□□□□ -0.6
SDCBP-210	ENST00000522843	GMPR2	Q9P2T1	348 aa	Known RBP	11.31	□□□□□ -0.6
SDCBP-210	ENST00000522843	AGL	P35573	1532 aa		11.3	□□□□□ -0.6
SDCBP-210	ENST00000522843	MYO5C	Q9NQX4	1742 aa		11.3	□□□□□ -0.6
SDCBP-210	ENST00000522843	TTC24	A2A3L6	582 aa	Predicted RBP	11.3	□□□□□ -0.6
SDCBP-210	ENST00000522843	C11orf95	C9JLR9	678 aa	Predicted RBP	11.3	□□□□□ -0.6
SDCBP-210	ENST00000522843	GRIPAP1	Q4V328	841 aa		11.3	□□□□□ -0.6
SDCBP-210	ENST00000522843	MSS51	Q4VC12	460 aa		11.3	□□□□□ -0.6
SDCBP-210	ENST00000522843	PHOX2B	Q99453	314 aa		11.3	□□□□□ -0.6
SDCBP-210	ENST00000522843	KIF14	Q15058	1648 aa		11.29	□□□□□ -0.6
SDCBP-210	ENST00000522843	MLH3	Q9UHC1	1453 aa		11.28	□□□□□ -0.6
SDCBP-210	ENST00000522843	RNF19B	Q6ZMZ0	732 aa		11.28	□□□□□ -0.6
SDCBP-210	ENST00000522843	WFS1	O76024	890 aa		11.27	□□□□□ -0.61
SDCBP-210	ENST00000522843	NPAT	Q14207	1427 aa		11.26	□□□□□ -0.61
SDCBP-210	ENST00000522843	TCOF1	Q13428	1488 aa	Known RBP	11.26	□□□□□ -0.61
SDCBP-210	ENST00000522843	WNT7A	O00755	349 aa		11.26	□□□□□ -0.61
SDCBP-210	ENST00000522843	CNTLN	Q9NXG0	1405 aa		11.25	□□□□□ -0.61
SDCBP-210	ENST00000522843	PLA2R1	Q13018	1463 aa		11.25	□□□□□ -0.61
SDCBP-210	ENST00000522843	ARHGAP5	Q13017	1502 aa		11.25	□□□□□ -0.61
SDCBP-210	ENST00000522843	ALK	Q9UM73	1620 aa		11.24	□□□□□ -0.61
SDCBP-210	ENST00000522843		Q3C1V9	767 aa		11.24	□□□□□ -0.61
SDCBP-210	ENST00000522843	SNIP1	Q8TAD8	396 aa	Known RBP	11.24	□□□□□ -0.61
SDCBP-210	ENST00000522843	ZMYM3	Q14202	1370 aa		11.24	□□□□□ -0.61
SDCBP-210	ENST00000522843	MROH2A	A6NES4	1674 aa		11.24	□□□□□ -0.61
SDCBP-210	ENST00000522843	ZNF142	P52746	1687 aa	Predicted RBP	11.24	□□□□□ -0.61
SDCBP-210	ENST00000522843	KIDINS220	Q9ULH0	1771 aa		11.23	□□□□□ -0.61
SDCBP-210	ENST00000522843	MYO3A	Q8NEV4	1616 aa		11.23	□□□□□ -0.61
SDCBP-210	ENST00000522843	CDC42BPB	Q9Y5S2	1711 aa		11.23	□□□□□ -0.61
SDCBP-210	ENST00000522843	SMPD1	P17405	629 aa		11.22	□□□□□ -0.61
SDCBP-210	ENST00000522843	MMP16	P51512	607 aa		11.22	□□□□□ -0.61
SDCBP-210	ENST00000522843	PIP4K2B	P78356	416 aa		11.22	□□□□□ -0.61
SDCBP-210	ENST00000522843	ESF1	Q9H501	851 aa	Known RBP	11.22	□□□□□ -0.61
SDCBP-210	ENST00000522843	ABCC1	P33527	1531 aa		11.21	□□□□□ -0.61
SDCBP-210	ENST00000522843	TRIM32	Q13049	653 aa		11.21	□□□□□ -0.61
SDCBP-210	ENST00000522843	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.2	□□□□□ -0.62
SDCBP-210	ENST00000522843	TRO	Q12816	1431 aa	Predicted RBP	11.2	□□□□□ -0.62
SDCBP-210	ENST00000522843	PTPRK	Q15262	1439 aa		11.2	□□□□□ -0.62
SDCBP-210	ENST00000522843	NFX1	Q12986	1120 aa	Known RBP	11.2	□□□□□ -0.62
SDCBP-210	ENST00000522843	ITSN2	Q9NZM3	1697 aa		11.2	□□□□□ -0.62
SDCBP-210	ENST00000522843	GPIHBP1	Q8IV16	184 aa		11.19	□□□□□ -0.62
SDCBP-210	ENST00000522843	VSIG10	Q8N0Z9	540 aa		11.19	□□□□□ -0.62
SDCBP-210	ENST00000522843	MRGPRX2	Q96LB1	330 aa		11.19	□□□□□ -0.62
SDCBP-210	ENST00000522843	ATP13A2	Q9NQ11	1180 aa		11.19	□□□□□ -0.62
SDCBP-210	ENST00000522843	RGS17	Q9UGC6	210 aa	Predicted RBP	11.19	□□□□□ -0.62
SDCBP-210	ENST00000522843	LRRIQ1	Q96JM4	1722 aa		11.18	□□□□□ -0.62
SDCBP-210	ENST00000522843	CD46	P15529	392 aa		11.18	□□□□□ -0.62
SDCBP-210	ENST00000522843	USB1	Q9BQ65	265 aa	Known RBP	11.18	□□□□□ -0.62
SDCBP-210	ENST00000522843	NEURL4	Q96JN8	1562 aa		11.18	□□□□□ -0.62
SDCBP-210	ENST00000522843	CLTC	Q00610	1675 aa	Known RBP	11.17	□□□□□ -0.62
SDCBP-210	ENST00000522843		J3QL48	77 aa		11.17	□□□□□ -0.62
SDCBP-210	ENST00000522843	TOM1	O60784	492 aa		11.17	□□□□□ -0.62
SDCBP-210	ENST00000522843	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.17	□□□□□ -0.62
SDCBP-210	ENST00000522843	PREX2	Q70Z35	1606 aa		11.17	□□□□□ -0.62
SDCBP-210	ENST00000522843	WIPF1	O43516	503 aa		11.16	□□□□□ -0.62
SDCBP-210	ENST00000522843	SHANK2	Q9UPX8	1470 aa		11.16	□□□□□ -0.62
SDCBP-210	ENST00000522843	SAMD9L	Q8IVG5	1584 aa		11.16	□□□□□ -0.62
SDCBP-210	ENST00000522843	CPS1	P31327	1500 aa		11.15	□□□□□ -0.62
SDCBP-210	ENST00000522843	KDM4A	O75164	1064 aa		11.15	□□□□□ -0.62
SDCBP-210	ENST00000522843	DXO	O77932	396 aa	Known RBP	11.15	□□□□□ -0.62
SDCBP-210	ENST00000522843	REPIN1	Q9BWE0	567 aa	Known RBP	11.15	□□□□□ -0.62
SDCBP-210	ENST00000522843	SENP2	Q9HC62	589 aa		11.15	□□□□□ -0.62
SDCBP-210	ENST00000522843	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.15	□□□□□ -0.62
SDCBP-210	ENST00000522843	DNMT1	P26358	1616 aa	Known RBP	11.15	□□□□□ -0.62
SDCBP-210	ENST00000522843	VWDE	Q8N2E2	1590 aa		11.15	□□□□□ -0.62
SDCBP-210	ENST00000522843	SNRPB	P14678	240 aa	Known RBP	11.14	□□□□□ -0.63
SDCBP-210	ENST00000522843	STK17A	Q9UEE5	414 aa		11.14	□□□□□ -0.63
SDCBP-210	ENST00000522843	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.14	□□□□□ -0.63
SDCBP-210	ENST00000522843	PLXNC1	O60486	1568 aa		11.14	□□□□□ -0.63
SDCBP-210	ENST00000522843	ARHGAP35	Q9NRY4	1499 aa		11.13	□□□□□ -0.63
SDCBP-210	ENST00000522843	INSM1	Q01101	510 aa	Predicted RBP	11.13	□□□□□ -0.63
SDCBP-210	ENST00000522843	TRIM47	Q96LD4	638 aa		11.13	□□□□□ -0.63
SDCBP-210	ENST00000522843	A2ML1	A8K2U0	1454 aa		11.12	□□□□□ -0.63
SDCBP-210	ENST00000522843	CLIP1	P30622	1438 aa		11.12	□□□□□ -0.63
SDCBP-210	ENST00000522843	FMN1	Q68DA7	1419 aa		11.12	□□□□□ -0.63
SDCBP-210	ENST00000522843	USP46	P62068	366 aa		11.12	□□□□□ -0.63
SDCBP-210	ENST00000522843	CCDC24	Q8N4L8	307 aa		11.12	□□□□□ -0.63
SDCBP-210	ENST00000522843	HPS1	Q92902	700 aa		11.12	□□□□□ -0.63
SDCBP-210	ENST00000522843	POLR1A	O95602	1720 aa	Predicted RBP	11.12	□□□□□ -0.63
SDCBP-210	ENST00000522843	TERT	O14746	1132 aa	Known RBP	11.11	□□□□□ -0.63
SDCBP-210	ENST00000522843	RC3H1	Q5TC82	1133 aa	Known RBP	11.11	□□□□□ -0.63
SDCBP-210	ENST00000522843	CDC42BPA	Q5VT25	1732 aa		11.11	□□□□□ -0.63
SDCBP-210	ENST00000522843	SYCP2	Q9BX26	1530 aa		11.09	□□□□□ -0.63
SDCBP-210	ENST00000522843	STRCP1	A6NGW2	1772 aa		11.09	□□□□□ -0.63
SDCBP-210	ENST00000522843	SLC24A1	O60721	1099 aa		11.09	□□□□□ -0.63
SDCBP-210	ENST00000522843	WNT7B	P56706	349 aa		11.09	□□□□□ -0.63
SDCBP-210	ENST00000522843	SKOR1	P84550	965 aa		11.09	□□□□□ -0.63
SDCBP-210	ENST00000522843	MAP2K5	Q13163	448 aa		11.09	□□□□□ -0.63
SDCBP-210	ENST00000522843	KIFC2	Q96AC6	838 aa		11.09	□□□□□ -0.63
SDCBP-210	ENST00000522843	EEA1	Q15075	1411 aa		11.09	□□□□□ -0.63
SDCBP-210	ENST00000522843	INO80	Q9ULG1	1556 aa	Predicted RBP	11.08	□□□□□ -0.64
SDCBP-210	ENST00000522843	A2M	P01023	1474 aa		11.08	□□□□□ -0.64

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