RNA–Protein interactions for RNA: ENST00000522387.5

PABPC1-219, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2 BASIC

Gene PABPC1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-219ENST00000522387 JCADQ9P266 1359 aa16.54■□□□□ 0.24
PABPC1-219ENST00000522387 DIAPH1O60610 1272 aaKnown RBP16.54■□□□□ 0.24
PABPC1-219ENST00000522387 HMOX1P09601 288 aa16.54■□□□□ 0.24
PABPC1-219ENST00000522387 STRN4Q9NRL3 753 aa16.54■□□□□ 0.24
PABPC1-219ENST00000522387 U2AF1L5P0DN76 240 aaPredicted RBP16.53■□□□□ 0.24
PABPC1-219ENST00000522387 U2AF1Q01081 240 aaKnown RBP eCLIP16.53■□□□□ 0.24
PABPC1-219ENST00000522387 EIF4A2Q14240 407 aaKnown RBP16.53■□□□□ 0.24
PABPC1-219ENST00000522387 WDR43Q15061 677 aaKnown RBP eCLIP16.53■□□□□ 0.24
PABPC1-219ENST00000522387 USHBP1Q8N6Y0 703 aa16.53■□□□□ 0.24
PABPC1-219ENST00000522387 FBXO41Q8TF61 875 aa16.53■□□□□ 0.24
PABPC1-219ENST00000522387 C8orf37Q96NL8 207 aa16.53■□□□□ 0.24
PABPC1-219ENST00000522387 ADAMTS8Q9UP79 889 aa16.53■□□□□ 0.24
PABPC1-219ENST00000522387 FLT4P35916 1363 aa16.53■□□□□ 0.24
PABPC1-219ENST00000522387 PNISRQ8TF01 805 aaKnown RBP16.53■□□□□ 0.24
PABPC1-219ENST00000522387 USP35Q9P2H5 1018 aa16.53■□□□□ 0.24
PABPC1-219ENST00000522387 CCDC146Q8IYE0 955 aa16.52■□□□□ 0.24
PABPC1-219ENST00000522387 IP6K1Q92551 441 aa16.52■□□□□ 0.24
PABPC1-219ENST00000522387 BTG4Q9NY30 223 aa16.52■□□□□ 0.24
PABPC1-219ENST00000522387 CSB-PGBD3P0DP91 1061 aa16.52■□□□□ 0.23
PABPC1-219ENST00000522387 CRYBG1Q9Y4K1 1723 aa16.52■□□□□ 0.23
PABPC1-219ENST00000522387 RGPD5Q99666 1765 aa16.51■□□□□ 0.23
PABPC1-219ENST00000522387 SALL2Q9Y467 1007 aaPredicted RBP16.51■□□□□ 0.23
PABPC1-219ENST00000522387 USP54Q70EL1 1684 aa16.51■□□□□ 0.23
PABPC1-219ENST00000522387 ABCA3Q99758 1704 aa16.51■□□□□ 0.23
PABPC1-219ENST00000522387 MEX3CQ5U5Q3 659 aaKnown RBP16.5■□□□□ 0.23
PABPC1-219ENST00000522387 ANKRD24Q8TF21 1146 aa16.5■□□□□ 0.23
PABPC1-219ENST00000522387 IL13P35225 146 aa16.5■□□□□ 0.23
PABPC1-219ENST00000522387 AEBP1Q8IUX7 1158 aa16.5■□□□□ 0.23
PABPC1-219ENST00000522387 EVA1CP58658 441 aa16.49■□□□□ 0.23
PABPC1-219ENST00000522387 NGLY1Q96IV0 654 aa16.49■□□□□ 0.23
PABPC1-219ENST00000522387 CDK12Q9NYV4 1490 aaPredicted RBP16.49■□□□□ 0.23
PABPC1-219ENST00000522387 NUDCQ9Y266 331 aa16.48■□□□□ 0.23
PABPC1-219ENST00000522387 NBPF6Q5VWK0 638 aa16.48■□□□□ 0.23
PABPC1-219ENST00000522387 NBPF4Q96M43 638 aa16.48■□□□□ 0.23
PABPC1-219ENST00000522387 EYA1Q99502 592 aa16.48■□□□□ 0.23
PABPC1-219ENST00000522387 NLRP2Q9NX02 1062 aa16.48■□□□□ 0.23
PABPC1-219ENST00000522387 SMG6Q86US8 1419 aaKnown RBP16.48■□□□□ 0.23
PABPC1-219ENST00000522387 SULT6B1Q6IMI4 303 aa16.47■□□□□ 0.23
PABPC1-219ENST00000522387 ERBB3P21860 1342 aa16.47■□□□□ 0.23
PABPC1-219ENST00000522387 SUPT16HQ9Y5B9 1047 aaKnown RBP16.47■□□□□ 0.23
PABPC1-219ENST00000522387 COL3A1P02461 1466 aaPredicted RBP16.47■□□□□ 0.23
PABPC1-219ENST00000522387 LRP6O75581 1613 aa16.47■□□□□ 0.23
PABPC1-219ENST00000522387 COL22A1Q8NFW1 1626 aaPredicted RBP16.47■□□□□ 0.23
PABPC1-219ENST00000522387 CPDO75976 1380 aa16.47■□□□□ 0.23
PABPC1-219ENST00000522387 INSRP06213 1382 aa16.47■□□□□ 0.23
PABPC1-219ENST00000522387 LARP1Q6PKG0 1096 aaKnown RBP16.46■□□□□ 0.23
PABPC1-219ENST00000522387 SHPRHQ149N8 1683 aa16.46■□□□□ 0.23
PABPC1-219ENST00000522387 CAMTA1Q9Y6Y1 1673 aa16.46■□□□□ 0.23
PABPC1-219ENST00000522387 EP400Q96L91 3159 aa16.46■□□□□ 0.23
PABPC1-219ENST00000522387 TOM1L2Q6ZVM7 507 aa16.46■□□□□ 0.23
PABPC1-219ENST00000522387 NEUROD2Q15784 382 aa16.45■□□□□ 0.22
PABPC1-219ENST00000522387 CCDC9Q9Y3X0 531 aaKnown RBP16.45■□□□□ 0.22
PABPC1-219ENST00000522387 SPATA31A6Q5VVP1 1343 aa16.44■□□□□ 0.22
PABPC1-219ENST00000522387 RGPD2P0DJD1 1756 aa16.44■□□□□ 0.22
PABPC1-219ENST00000522387 RTL1A6NKG5 1358 aa16.43■□□□□ 0.22
PABPC1-219ENST00000522387 RRP7AQ9Y3A4 280 aaKnown RBP16.43■□□□□ 0.22
PABPC1-219ENST00000522387 PRKAR2BP31323 418 aa16.42■□□□□ 0.22
PABPC1-219ENST00000522387 HNRNPUQ00839 825 aaKnown RBP eCLIP16.42■□□□□ 0.22
PABPC1-219ENST00000522387 COL18A1P39060 1754 aa16.42■□□□□ 0.22
PABPC1-219ENST00000522387 BLMP54132 1417 aaPredicted RBP16.41■□□□□ 0.22
PABPC1-219ENST00000522387 KIF24Q5T7B8 1368 aa16.41■□□□□ 0.22
PABPC1-219ENST00000522387 PHACTR3Q96KR7 559 aa16.41■□□□□ 0.22
PABPC1-219ENST00000522387 COL5A2P05997 1499 aaPredicted RBP16.41■□□□□ 0.22
PABPC1-219ENST00000522387 ILDR1Q86SU0 546 aaPredicted RBP16.4■□□□□ 0.22
PABPC1-219ENST00000522387 APAF1O14727 1248 aa16.39■□□□□ 0.21
PABPC1-219ENST00000522387 RSPH6AQ9H0K4 717 aa16.39■□□□□ 0.21
PABPC1-219ENST00000522387 USP21Q9UK80 565 aa16.39■□□□□ 0.21
PABPC1-219ENST00000522387 WDR17Q8IZU2 1322 aa16.39■□□□□ 0.21
PABPC1-219ENST00000522387 IGSF1Q8N6C5 1336 aa16.38■□□□□ 0.21
PABPC1-219ENST00000522387 LMO7Q8WWI1 1683 aa16.38■□□□□ 0.21
PABPC1-219ENST00000522387 AFF2P51816 1311 aa16.38■□□□□ 0.21
PABPC1-219ENST00000522387 FCHSD2O94868 740 aa16.36■□□□□ 0.21
PABPC1-219ENST00000522387 MAPK8IP3Q9UPT6 1336 aa16.36■□□□□ 0.21
PABPC1-219ENST00000522387 PLCH1Q4KWH8 1693 aa16.36■□□□□ 0.21
PABPC1-219ENST00000522387 COL14A1Q05707 1796 aaKnown RBP16.36■□□□□ 0.21
PABPC1-219ENST00000522387 UNC5CLQ8IV45 518 aa16.36■□□□□ 0.21
PABPC1-219ENST00000522387 TCP11L2Q8N4U5 519 aa16.36■□□□□ 0.21
PABPC1-219ENST00000522387 PLEKHF1Q96S99 279 aa16.36■□□□□ 0.21
PABPC1-219ENST00000522387 A0A0G2JS52 829 aa16.35■□□□□ 0.21
PABPC1-219ENST00000522387 RUNDC1Q96C34 613 aa16.35■□□□□ 0.21
PABPC1-219ENST00000522387 BCL9LQ86UU0 1499 aa16.34■□□□□ 0.21
PABPC1-219ENST00000522387 NEFMP07197 916 aa16.34■□□□□ 0.21
PABPC1-219ENST00000522387 FNBP4Q8N3X1 1017 aaPredicted RBP16.34■□□□□ 0.21
PABPC1-219ENST00000522387 RAPGEF4Q8WZA2 1011 aa16.34■□□□□ 0.21
PABPC1-219ENST00000522387 SLIT2O94813 1529 aa16.34■□□□□ 0.21
PABPC1-219ENST00000522387 CRB1P82279 1406 aa16.32■□□□□ 0.2
PABPC1-219ENST00000522387 RGPD1P0DJD0 1748 aa16.32■□□□□ 0.2
PABPC1-219ENST00000522387 FAM98CQ17RN3 349 aaKnown RBP16.32■□□□□ 0.2
PABPC1-219ENST00000522387 MTHFSDQ2M296 383 aaKnown RBP16.32■□□□□ 0.2
PABPC1-219ENST00000522387 CARD10Q9BWT7 1032 aa16.32■□□□□ 0.2
PABPC1-219ENST00000522387 DCTN1Q14203 1278 aa16.31■□□□□ 0.2
PABPC1-219ENST00000522387 KDRP35968 1356 aa16.31■□□□□ 0.2
PABPC1-219ENST00000522387 RIPK4P57078 832 aa16.3■□□□□ 0.2
PABPC1-219ENST00000522387 QTRT2Q9H974 415 aaKnown RBP16.3■□□□□ 0.2
PABPC1-219ENST00000522387 MEGF6O75095 1541 aa16.3■□□□□ 0.2
PABPC1-219ENST00000522387 DDX54Q8TDD1 881 aaKnown RBP16.3■□□□□ 0.2
PABPC1-219ENST00000522387 THUMPD2Q9BTF0 503 aaKnown RBP16.3■□□□□ 0.2
PABPC1-219ENST00000522387 SPATA31A1Q5TZJ5 1347 aa16.3■□□□□ 0.2
PABPC1-219ENST00000522387 TATP17735 454 aaPredicted RBP16.29■□□□□ 0.2
PABPC1-219ENST00000522387 TMPOP42166 694 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms