RNA–Protein interactions for RNA: ENST00000515572.5

SNF8-215, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 2

Gene SNF8, Length 687 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-215ENST00000515572 KIF24Q5T7B8 1368 aa16.24■□□□□ 0.19
SNF8-215ENST00000515572 COL5A2P05997 1499 aaPredicted RBP16.23■□□□□ 0.19
SNF8-215ENST00000515572 MAP3K19Q56UN5 1328 aa16.23■□□□□ 0.19
SNF8-215ENST00000515572 BLMP54132 1417 aaPredicted RBP16.23■□□□□ 0.19
SNF8-215ENST00000515572 QTRT2Q9H974 415 aaKnown RBP16.23■□□□□ 0.19
SNF8-215ENST00000515572 EVA1CP58658 441 aa16.22■□□□□ 0.19
SNF8-215ENST00000515572 DDX10Q13206 875 aaKnown RBP16.22■□□□□ 0.19
SNF8-215ENST00000515572 VPS72Q15906 364 aa16.22■□□□□ 0.19
SNF8-215ENST00000515572 FAM208AQ9UK61 1670 aaKnown RBP16.21■□□□□ 0.19
SNF8-215ENST00000515572 AMPHP49418 695 aa16.21■□□□□ 0.19
SNF8-215ENST00000515572 POTEAQ6S8J7 498 aa16.21■□□□□ 0.19
SNF8-215ENST00000515572 IP6K1Q92551 441 aa16.21■□□□□ 0.19
SNF8-215ENST00000515572 PEAK1Q9H792 1746 aa16.2■□□□□ 0.18
SNF8-215ENST00000515572 RBM6P78332 1123 aaKnown RBP16.2■□□□□ 0.18
SNF8-215ENST00000515572 RRS1Q15050 365 aaKnown RBP16.2■□□□□ 0.18
SNF8-215ENST00000515572 CC2D1BQ5T0F9 858 aaKnown RBP16.2■□□□□ 0.18
SNF8-215ENST00000515572 GJD4Q96KN9 370 aaPredicted RBP16.2■□□□□ 0.18
SNF8-215ENST00000515572 STRN4Q9NRL3 753 aa16.2■□□□□ 0.18
SNF8-215ENST00000515572 AXIN2Q9Y2T1 843 aa16.2■□□□□ 0.18
SNF8-215ENST00000515572 FLT4P35916 1363 aa16.19■□□□□ 0.18
SNF8-215ENST00000515572 FBLN1P23142 703 aa16.19■□□□□ 0.18
SNF8-215ENST00000515572 RXRBP28702 533 aa16.19■□□□□ 0.18
SNF8-215ENST00000515572 HOXC9P31274 260 aa16.19■□□□□ 0.18
SNF8-215ENST00000515572 CRB1P82279 1406 aa16.19■□□□□ 0.18
SNF8-215ENST00000515572 GLI3P10071 1580 aa16.18■□□□□ 0.18
SNF8-215ENST00000515572 CDK12Q9NYV4 1490 aaPredicted RBP16.18■□□□□ 0.18
SNF8-215ENST00000515572 TNNT2P45379 298 aaPredicted RBP16.18■□□□□ 0.18
SNF8-215ENST00000515572 CCDC9Q9Y3X0 531 aaKnown RBP16.18■□□□□ 0.18
SNF8-215ENST00000515572 SMG6Q86US8 1419 aaKnown RBP16.18■□□□□ 0.18
SNF8-215ENST00000515572 SPATA31A5Q5VU36 1347 aa16.18■□□□□ 0.18
SNF8-215ENST00000515572 SPATA31A7Q8IWB4 1347 aa16.18■□□□□ 0.18
SNF8-215ENST00000515572 WDR17Q8IZU2 1322 aa16.18■□□□□ 0.18
SNF8-215ENST00000515572 POLKQ9UBT6 870 aa16.17■□□□□ 0.18
SNF8-215ENST00000515572 ERBB3P21860 1342 aa16.17■□□□□ 0.18
SNF8-215ENST00000515572 INSRP06213 1382 aa16.16■□□□□ 0.18
SNF8-215ENST00000515572 LARP1Q6PKG0 1096 aaKnown RBP16.16■□□□□ 0.18
SNF8-215ENST00000515572 EMILIN1Q9Y6C2 1016 aa16.16■□□□□ 0.18
SNF8-215ENST00000515572 SPATA31A1Q5TZJ5 1347 aa16.16■□□□□ 0.18
SNF8-215ENST00000515572 PPM1GO15355 546 aaPredicted RBP16.15■□□□□ 0.18
SNF8-215ENST00000515572 CSB-PGBD3P0DP91 1061 aa16.15■□□□□ 0.18
SNF8-215ENST00000515572 ANKRD24Q8TF21 1146 aa16.15■□□□□ 0.18
SNF8-215ENST00000515572 WNK3Q9BYP7 1800 aa16.15■□□□□ 0.18
SNF8-215ENST00000515572 TOM1L2Q6ZVM7 507 aa16.14■□□□□ 0.17
SNF8-215ENST00000515572 THRAP3Q9Y2W1 955 aaKnown RBP16.14■□□□□ 0.17
SNF8-215ENST00000515572 CARD10Q9BWT7 1032 aa16.13■□□□□ 0.17
SNF8-215ENST00000515572 RGPD2P0DJD1 1756 aa16.13■□□□□ 0.17
SNF8-215ENST00000515572 ONECUT3O60422 494 aaPredicted RBP16.12■□□□□ 0.17
SNF8-215ENST00000515572 CNGB1Q14028 1251 aaPredicted RBP16.12■□□□□ 0.17
SNF8-215ENST00000515572 HSP90AB2PQ58FF8 381 aa16.12■□□□□ 0.17
SNF8-215ENST00000515572 BARGINQ6ZT62 677 aa16.12■□□□□ 0.17
SNF8-215ENST00000515572 TCP11L2Q8N4U5 519 aa16.12■□□□□ 0.17
SNF8-215ENST00000515572 PARD3Q8TEW0 1356 aa16.12■□□□□ 0.17
SNF8-215ENST00000515572 THSD7AQ9UPZ6 1657 aa16.11■□□□□ 0.17
SNF8-215ENST00000515572 LTV1Q96GA3 475 aaPredicted RBP16.11■□□□□ 0.17
SNF8-215ENST00000515572 USP35Q9P2H5 1018 aa16.11■□□□□ 0.17
SNF8-215ENST00000515572 RALBP1Q15311 655 aa16.1■□□□□ 0.17
SNF8-215ENST00000515572 NLRP2Q9NX02 1062 aa16.1■□□□□ 0.17
SNF8-215ENST00000515572 PARP4Q9UKK3 1724 aaKnown RBP16.1■□□□□ 0.17
SNF8-215ENST00000515572 RGS12O14924 1447 aa16.1■□□□□ 0.17
SNF8-215ENST00000515572 MTHFSP49914 203 aa16.09■□□□□ 0.17
SNF8-215ENST00000515572 FAM98CQ17RN3 349 aaKnown RBP16.09■□□□□ 0.17
SNF8-215ENST00000515572 BRWD3Q6RI45 1802 aa16.08■□□□□ 0.17
SNF8-215ENST00000515572 PPP2R1AP30153 589 aa16.08■□□□□ 0.16
SNF8-215ENST00000515572 CDCA7Q9BWT1 371 aaPredicted RBP16.08■□□□□ 0.16
SNF8-215ENST00000515572 A0A0G2JS52 829 aa16.06■□□□□ 0.16
SNF8-215ENST00000515572 MYT1Q01538 1121 aa16.06■□□□□ 0.16
SNF8-215ENST00000515572 SEPT12Q8IYM1 358 aa16.06■□□□□ 0.16
SNF8-215ENST00000515572 RGPD1P0DJD0 1748 aa16.05■□□□□ 0.16
SNF8-215ENST00000515572 LRRC37A3O60309 1634 aa16.05■□□□□ 0.16
SNF8-215ENST00000515572 DISP2A7MBM2 1401 aa16.05■□□□□ 0.16
SNF8-215ENST00000515572 EIF4A2Q14240 407 aaKnown RBP16.05■□□□□ 0.16
SNF8-215ENST00000515572 NBPF6Q5VWK0 638 aa16.05■□□□□ 0.16
SNF8-215ENST00000515572 ILDR2Q71H61 639 aa16.05■□□□□ 0.16
SNF8-215ENST00000515572 NBPF4Q96M43 638 aa16.05■□□□□ 0.16
SNF8-215ENST00000515572 CFAP53Q96M91 514 aa16.05■□□□□ 0.16
SNF8-215ENST00000515572 NCAPD2Q15021 1401 aa16.04■□□□□ 0.16
SNF8-215ENST00000515572 IL2RBP14784 551 aa16.04■□□□□ 0.16
SNF8-215ENST00000515572 COL3A1P02461 1466 aaPredicted RBP16.03■□□□□ 0.16
SNF8-215ENST00000515572 IGSF1Q8N6C5 1336 aa16.02■□□□□ 0.16
SNF8-215ENST00000515572 DIAPH1O60610 1272 aaKnown RBP16.02■□□□□ 0.16
SNF8-215ENST00000515572 IL13P35225 146 aa16.02■□□□□ 0.16
SNF8-215ENST00000515572 EYA1Q99502 592 aa16.02■□□□□ 0.16
SNF8-215ENST00000515572 PRKRIP1Q9H875 184 aaPredicted RBP16.02■□□□□ 0.16
SNF8-215ENST00000515572 MYBBP1AQ9BQG0 1328 aaKnown RBP16.01■□□□□ 0.15
SNF8-215ENST00000515572 DDB1Q16531 1140 aa16■□□□□ 0.15
SNF8-215ENST00000515572 KRT27Q7Z3Y8 459 aa16■□□□□ 0.15
SNF8-215ENST00000515572 RAPGEF4Q8WZA2 1011 aa16■□□□□ 0.15
SNF8-215ENST00000515572 TNS2Q63HR2 1409 aa16■□□□□ 0.15
SNF8-215ENST00000515572 PLEKHG2Q9H7P9 1386 aa16■□□□□ 0.15
SNF8-215ENST00000515572 PDE3BQ13370 1112 aa15.99■□□□□ 0.15
SNF8-215ENST00000515572 USHBP1Q8N6Y0 703 aa15.99■□□□□ 0.15
SNF8-215ENST00000515572 OVOS2A0A0G2JMS6 1433 aa15.99■□□□□ 0.15
SNF8-215ENST00000515572 MEGF6O75095 1541 aa15.99■□□□□ 0.15
SNF8-215ENST00000515572 EXOC5O00471 708 aa15.98■□□□□ 0.15
SNF8-215ENST00000515572 ANP32CO43423 234 aa15.98■□□□□ 0.15
SNF8-215ENST00000515572 TATP17735 454 aaPredicted RBP15.98■□□□□ 0.15
SNF8-215ENST00000515572 PKD1L3Q7Z443 1732 aa15.98■□□□□ 0.15
SNF8-215ENST00000515572 KDRP35968 1356 aa15.98■□□□□ 0.15
SNF8-215ENST00000515572 SHANK3Q9BYB0 1731 aa15.97■□□□□ 0.15
SNF8-215ENST00000515572 NUDCQ9Y266 331 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms