RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 ITPKCQ96DU7 683 aa9.93□□□□□ -0.82
NUP54-218ENST00000515460 CARD14Q9BXL6 1004 aa9.93□□□□□ -0.82
NUP54-218ENST00000515460 NXF1Q9UBU9 619 aaKnown RBP9.93□□□□□ -0.82
NUP54-218ENST00000515460 SKIV2LQ15477 1246 aaKnown RBP9.92□□□□□ -0.82
NUP54-218ENST00000515460 SLC16A10Q8TF71 515 aa9.92□□□□□ -0.82
NUP54-218ENST00000515460 NCAPD3P42695 1498 aa9.91□□□□□ -0.82
NUP54-218ENST00000515460 FBXO31Q5XUX0 539 aaPredicted RBP9.91□□□□□ -0.82
NUP54-218ENST00000515460 LRRN4Q8WUT4 740 aa9.91□□□□□ -0.82
NUP54-218ENST00000515460 SOBPA7XYQ1 873 aa9.9□□□□□ -0.82
NUP54-218ENST00000515460 C6orf118Q5T5N4 469 aa9.9□□□□□ -0.82
NUP54-218ENST00000515460 VASH1Q7L8A9 365 aaPredicted RBP9.9□□□□□ -0.82
NUP54-218ENST00000515460 SH3BP5LQ7L8J4 393 aa9.9□□□□□ -0.82
NUP54-218ENST00000515460 SH3RF1Q7Z6J0 888 aa9.9□□□□□ -0.82
NUP54-218ENST00000515460 MRC2Q9UBG0 1479 aa9.9□□□□□ -0.83
NUP54-218ENST00000515460 WIPF1O43516 503 aa9.89□□□□□ -0.83
NUP54-218ENST00000515460 FSHRP23945 695 aa9.89□□□□□ -0.83
NUP54-218ENST00000515460 WDR62O43379 1518 aa9.88□□□□□ -0.83
NUP54-218ENST00000515460 INSM1Q01101 510 aaPredicted RBP9.88□□□□□ -0.83
NUP54-218ENST00000515460 SH3D19Q5HYK7 790 aa9.88□□□□□ -0.83
NUP54-218ENST00000515460 DDRGK1Q96HY6 314 aa9.88□□□□□ -0.83
NUP54-218ENST00000515460 C1QTNF2Q9BXJ5 285 aa9.88□□□□□ -0.83
NUP54-218ENST00000515460 PDS5BQ9NTI5 1447 aa9.88□□□□□ -0.83
NUP54-218ENST00000515460 AP1G2O75843 785 aa9.86□□□□□ -0.83
NUP54-218ENST00000515460 BMP2P12643 396 aa9.86□□□□□ -0.83
NUP54-218ENST00000515460 NR6A1Q15406 480 aa9.86□□□□□ -0.83
NUP54-218ENST00000515460 SYNJ2O15056 1496 aa9.85□□□□□ -0.83
NUP54-218ENST00000515460 LAMC3Q9Y6N6 1575 aa9.85□□□□□ -0.83
NUP54-218ENST00000515460 UPP2O95045 317 aa9.85□□□□□ -0.83
NUP54-218ENST00000515460 TRMT44Q8IYL2 757 aaKnown RBP9.85□□□□□ -0.83
NUP54-218ENST00000515460 GPKOWQ92917 476 aaPredicted RBP eCLIP9.85□□□□□ -0.83
NUP54-218ENST00000515460 ARHGAP9Q9BRR9 750 aa9.85□□□□□ -0.83
NUP54-218ENST00000515460 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.85□□□□□ -0.83
NUP54-218ENST00000515460 FKBPLQ9UIM3 349 aa9.85□□□□□ -0.83
NUP54-218ENST00000515460 MAN1A2O60476 641 aa9.84□□□□□ -0.83
NUP54-218ENST00000515460 GMPRP36959 345 aa9.84□□□□□ -0.83
NUP54-218ENST00000515460 ERFEQ4G0M1 354 aa9.84□□□□□ -0.83
NUP54-218ENST00000515460 IRF7Q92985 503 aa9.84□□□□□ -0.83
NUP54-218ENST00000515460 MAP4K5Q9Y4K4 846 aa9.84□□□□□ -0.83
NUP54-218ENST00000515460 H3BM21 787 aa9.83□□□□□ -0.84
NUP54-218ENST00000515460 PDXDC2PQ6P474 469 aa9.83□□□□□ -0.84
NUP54-218ENST00000515460 NPAS3Q8IXF0 933 aa9.83□□□□□ -0.84
NUP54-218ENST00000515460 PPP2R2DQ66LE6 453 aa9.82□□□□□ -0.84
NUP54-218ENST00000515460 ZBTB33Q86T24 672 aa9.82□□□□□ -0.84
NUP54-218ENST00000515460 CCDC116Q8IYX3 515 aa9.82□□□□□ -0.84
NUP54-218ENST00000515460 LINC00528Q8N1L1 170 aa9.82□□□□□ -0.84
NUP54-218ENST00000515460 STK17AQ9UEE5 414 aa9.82□□□□□ -0.84
NUP54-218ENST00000515460 ERBB4Q15303 1308 aa9.82□□□□□ -0.84
NUP54-218ENST00000515460 TPRNQ4KMQ1 711 aa9.81□□□□□ -0.84
NUP54-218ENST00000515460 MEIOBQ8N635 442 aa9.81□□□□□ -0.84
NUP54-218ENST00000515460 EMILIN1Q9Y6C2 1016 aa9.81□□□□□ -0.84
NUP54-218ENST00000515460 EPS8L1Q8TE68 723 aa9.8□□□□□ -0.84
NUP54-218ENST00000515460 NEUROD2Q15784 382 aa9.79□□□□□ -0.84
NUP54-218ENST00000515460 PPP1R26Q5T8A7 1209 aaPredicted RBP9.79□□□□□ -0.84
NUP54-218ENST00000515460 SLC10A4Q96EP9 437 aa9.79□□□□□ -0.84
NUP54-218ENST00000515460 KCTD15Q96SI1 283 aaPredicted RBP9.79□□□□□ -0.84
NUP54-218ENST00000515460 TSEN34Q9BSV6 310 aaKnown RBP9.78□□□□□ -0.84
NUP54-218ENST00000515460 PTK2Q05397 1052 aa9.77□□□□□ -0.85
NUP54-218ENST00000515460 CBLBQ13191 982 aa9.77□□□□□ -0.85
NUP54-218ENST00000515460 HMX1Q9NP08 348 aaPredicted RBP9.77□□□□□ -0.85
NUP54-218ENST00000515460 OCSTAMPQ9BR26 566 aa9.76□□□□□ -0.85
NUP54-218ENST00000515460 PGPEP1Q9NXJ5 209 aa9.76□□□□□ -0.85
NUP54-218ENST00000515460 ATAD2BQ9ULI0 1458 aa9.76□□□□□ -0.85
NUP54-218ENST00000515460 USP17L8P0C7I0 530 aa9.75□□□□□ -0.85
NUP54-218ENST00000515460 ADAM32Q8TC27 787 aa9.75□□□□□ -0.85
NUP54-218ENST00000515460 DNMT3LQ9UJW3 386 aa9.75□□□□□ -0.85
NUP54-218ENST00000515460 SOS2Q07890 1332 aaPredicted RBP9.75□□□□□ -0.85
NUP54-218ENST00000515460 ZC3H4Q9UPT8 1303 aaKnown RBP9.75□□□□□ -0.85
NUP54-218ENST00000515460 SPATA31D1Q6ZQQ2 1576 aa9.75□□□□□ -0.85
NUP54-218ENST00000515460 RFC5P40937 340 aa9.74□□□□□ -0.85
NUP54-218ENST00000515460 RAB15P59190 212 aa9.74□□□□□ -0.85
NUP54-218ENST00000515460 FIGNL2A6NMB9 653 aa9.73□□□□□ -0.85
NUP54-218ENST00000515460 ZSCAN1Q8NBB4 408 aa9.73□□□□□ -0.85
NUP54-218ENST00000515460 IL27Q8NEV9 243 aa9.73□□□□□ -0.85
NUP54-218ENST00000515460 CDV3Q9UKY7 258 aaKnown RBP9.73□□□□□ -0.85
NUP54-218ENST00000515460 RSF1Q96T23 1441 aaPredicted RBP9.73□□□□□ -0.85
NUP54-218ENST00000515460 TTLL8A6PVC2 850 aa9.72□□□□□ -0.85
NUP54-218ENST00000515460 PPFIA3O75145 1194 aa9.72□□□□□ -0.85
NUP54-218ENST00000515460 INTS6LQ5JSJ4 861 aaKnown RBP9.72□□□□□ -0.85
NUP54-218ENST00000515460 PNMA1Q8ND90 353 aa9.72□□□□□ -0.85
NUP54-218ENST00000515460 PCMTD1Q96MG8 357 aaPredicted RBP9.72□□□□□ -0.85
NUP54-218ENST00000515460 DHX9Q08211 1270 aaKnown RBP9.71□□□□□ -0.86
NUP54-218ENST00000515460 Q6ZVU0 165 aa9.71□□□□□ -0.86
NUP54-218ENST00000515460 AGBL1Q96MI9 1066 aa9.71□□□□□ -0.86
NUP54-218ENST00000515460 GPSM3Q9Y4H4 160 aa9.71□□□□□ -0.86
NUP54-218ENST00000515460 BRPF1P55201 1214 aaPredicted RBP9.7□□□□□ -0.86
NUP54-218ENST00000515460 RELBQ01201 579 aa9.7□□□□□ -0.86
NUP54-218ENST00000515460 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.7□□□□□ -0.86
NUP54-218ENST00000515460 DZIP3Q86Y13 1208 aaKnown RBP9.7□□□□□ -0.86
NUP54-218ENST00000515460 GOPCQ9HD26 462 aa9.7□□□□□ -0.86
NUP54-218ENST00000515460 FAM181BA6NEQ2 426 aa9.69□□□□□ -0.86
NUP54-218ENST00000515460 TMPRSS4Q9NRS4 437 aa9.69□□□□□ -0.86
NUP54-218ENST00000515460 ZNF608Q9ULD9 1512 aaPredicted RBP9.68□□□□□ -0.86
NUP54-218ENST00000515460 ADGRL1O94910 1474 aa9.68□□□□□ -0.86
NUP54-218ENST00000515460 LORP23490 312 aaPredicted RBP9.68□□□□□ -0.86
NUP54-218ENST00000515460 NBPF20Q3BBV1 942 aa9.68□□□□□ -0.86
NUP54-218ENST00000515460 HMGXB3Q12766 1538 aa9.67□□□□□ -0.86
NUP54-218ENST00000515460 SPINT1O43278 529 aa9.67□□□□□ -0.86
NUP54-218ENST00000515460 VSIG8P0DPA2 414 aa9.67□□□□□ -0.86
NUP54-218ENST00000515460 PTSQ03393 145 aa9.67□□□□□ -0.86
NUP54-218ENST00000515460 ZNF395Q9H8N7 513 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms