RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 AMPHP49418 695 aa28.31■■■□□ 2.12
LSM6-207ENST00000515311 IP6K1Q92551 441 aa28.31■■■□□ 2.12
LSM6-207ENST00000515311 NWD2Q9ULI1 1742 aa28.31■■■□□ 2.12
LSM6-207ENST00000515311 RGPD5Q99666 1765 aa28.31■■■□□ 2.12
LSM6-207ENST00000515311 INSRP06213 1382 aa28.3■■■□□ 2.12
LSM6-207ENST00000515311 HOXC9P31274 260 aa28.3■■■□□ 2.12
LSM6-207ENST00000515311 ZBTB7CA1YPR0 619 aa28.29■■■□□ 2.12
LSM6-207ENST00000515311 FAM83GA6ND36 823 aa28.29■■■□□ 2.12
LSM6-207ENST00000515311 PPM1GO15355 546 aaPredicted RBP28.29■■■□□ 2.12
LSM6-207ENST00000515311 CHRNA2Q15822 529 aa28.28■■■□□ 2.12
LSM6-207ENST00000515311 ILDR1Q86SU0 546 aaPredicted RBP28.28■■■□□ 2.12
LSM6-207ENST00000515311 CAMTA1Q9Y6Y1 1673 aa28.27■■■□□ 2.12
LSM6-207ENST00000515311 COL3A1P02461 1466 aaPredicted RBP28.27■■■□□ 2.12
LSM6-207ENST00000515311 CFAP53Q96M91 514 aa28.25■■■□□ 2.11
LSM6-207ENST00000515311 FAM208AQ9UK61 1670 aaKnown RBP28.25■■■□□ 2.11
LSM6-207ENST00000515311 SLIT2O94813 1529 aa28.24■■■□□ 2.11
LSM6-207ENST00000515311 NRAPQ86VF7 1730 aa28.24■■■□□ 2.11
LSM6-207ENST00000515311 AXIN2Q9Y2T1 843 aa28.24■■■□□ 2.11
LSM6-207ENST00000515311 HSP90AB2PQ58FF8 381 aa28.23■■■□□ 2.11
LSM6-207ENST00000515311 MEX3CQ5U5Q3 659 aaKnown RBP28.23■■■□□ 2.11
LSM6-207ENST00000515311 COL5A2P05997 1499 aaPredicted RBP28.22■■■□□ 2.11
LSM6-207ENST00000515311 MIER1Q8N108 512 aa28.22■■■□□ 2.11
LSM6-207ENST00000515311 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.21■■■□□ 2.11
LSM6-207ENST00000515311 C8orf37Q96NL8 207 aa28.21■■■□□ 2.11
LSM6-207ENST00000515311 FNBP4Q8N3X1 1017 aaPredicted RBP28.19■■■□□ 2.1
LSM6-207ENST00000515311 NGLY1Q96IV0 654 aa28.19■■■□□ 2.1
LSM6-207ENST00000515311 BTG4Q9NY30 223 aa28.19■■■□□ 2.1
LSM6-207ENST00000515311 ERBB3P21860 1342 aa28.18■■■□□ 2.1
LSM6-207ENST00000515311 CCER2I3L3R5 266 aa28.18■■■□□ 2.1
LSM6-207ENST00000515311 ANKRD24Q8TF21 1146 aa28.17■■■□□ 2.1
LSM6-207ENST00000515311 RGPD1P0DJD0 1748 aa28.17■■■□□ 2.1
LSM6-207ENST00000515311 DIAPH1O60610 1272 aaKnown RBP28.16■■■□□ 2.1
LSM6-207ENST00000515311 EIF4A2Q14240 407 aaKnown RBP28.16■■■□□ 2.1
LSM6-207ENST00000515311 BCL9LQ86UU0 1499 aa28.15■■■□□ 2.1
LSM6-207ENST00000515311 IL13P35225 146 aa28.14■■■□□ 2.1
LSM6-207ENST00000515311 WDR17Q8IZU2 1322 aa28.14■■■□□ 2.09
LSM6-207ENST00000515311 RGPD2P0DJD1 1756 aa28.14■■■□□ 2.09
LSM6-207ENST00000515311 CCDC184Q52MB2 194 aa28.13■■■□□ 2.09
LSM6-207ENST00000515311 MRS2Q9HD23 443 aa28.13■■■□□ 2.09
LSM6-207ENST00000515311 EVA1CP58658 441 aa28.12■■■□□ 2.09
LSM6-207ENST00000515311 LTV1Q96GA3 475 aaPredicted RBP28.12■■■□□ 2.09
LSM6-207ENST00000515311 AFF2P51816 1311 aa28.12■■■□□ 2.09
LSM6-207ENST00000515311 UNC5CLQ8IV45 518 aa28.11■■■□□ 2.09
LSM6-207ENST00000515311 NUDCQ9Y266 331 aa28.1■■■□□ 2.09
LSM6-207ENST00000515311 CRB1P82279 1406 aa28.09■■■□□ 2.09
LSM6-207ENST00000515311 CSB-PGBD3P0DP91 1061 aa28.09■■■□□ 2.09
LSM6-207ENST00000515311 STRN4Q9NRL3 753 aa28.09■■■□□ 2.09
LSM6-207ENST00000515311 USP21Q9UK80 565 aa28.09■■■□□ 2.09
LSM6-207ENST00000515311 NCAPD2Q15021 1401 aa28.09■■■□□ 2.09
LSM6-207ENST00000515311 LARP1Q6PKG0 1096 aaKnown RBP28.07■■■□□ 2.08
LSM6-207ENST00000515311 IGSF1Q8N6C5 1336 aa28.07■■■□□ 2.08
LSM6-207ENST00000515311 TOM1L2Q6ZVM7 507 aa28.05■■■□□ 2.08
LSM6-207ENST00000515311 EYA1Q99502 592 aa28.05■■■□□ 2.08
LSM6-207ENST00000515311 CARD10Q9BWT7 1032 aa28.05■■■□□ 2.08
LSM6-207ENST00000515311 VPS72Q15906 364 aa28.04■■■□□ 2.08
LSM6-207ENST00000515311 NBPF6Q5VWK0 638 aa28.04■■■□□ 2.08
LSM6-207ENST00000515311 NBPF4Q96M43 638 aa28.04■■■□□ 2.08
LSM6-207ENST00000515311 NLRP2Q9NX02 1062 aa28.04■■■□□ 2.08
LSM6-207ENST00000515311 U2SURPO15042 1029 aaKnown RBP28.03■■■□□ 2.08
LSM6-207ENST00000515311 PNISRQ8TF01 805 aaKnown RBP28.03■■■□□ 2.08
LSM6-207ENST00000515311 ATRNO75882 1429 aa28.02■■■□□ 2.08
LSM6-207ENST00000515311 KDRP35968 1356 aa28.02■■■□□ 2.08
LSM6-207ENST00000515311 WDR43Q15061 677 aaKnown RBP eCLIP28.02■■■□□ 2.08
LSM6-207ENST00000515311 SPATA31A5Q5VU36 1347 aa28.01■■■□□ 2.07
LSM6-207ENST00000515311 SPATA31A7Q8IWB4 1347 aa28.01■■■□□ 2.07
LSM6-207ENST00000515311 ZNF772Q68DY9 489 aaPredicted RBP28.01■■■□□ 2.07
LSM6-207ENST00000515311 WNK3Q9BYP7 1800 aa28.01■■■□□ 2.07
LSM6-207ENST00000515311 U2AF1L5P0DN76 240 aaPredicted RBP28■■■□□ 2.07
LSM6-207ENST00000515311 U2AF1Q01081 240 aaKnown RBP eCLIP28■■■□□ 2.07
LSM6-207ENST00000515311 SPATA31A1Q5TZJ5 1347 aa27.99■■■□□ 2.07
LSM6-207ENST00000515311 TRPC5Q9UL62 973 aaPredicted RBP27.99■■■□□ 2.07
LSM6-207ENST00000515311 SULT6B1Q6IMI4 303 aa27.97■■■□□ 2.07
LSM6-207ENST00000515311 THRAP3Q9Y2W1 955 aaKnown RBP27.97■■■□□ 2.07
LSM6-207ENST00000515311 PARP4Q9UKK3 1724 aaKnown RBP27.96■■■□□ 2.07
LSM6-207ENST00000515311 USHBP1Q8N6Y0 703 aa27.96■■■□□ 2.07
LSM6-207ENST00000515311 PLEKHG2Q9H7P9 1386 aa27.96■■■□□ 2.07
LSM6-207ENST00000515311 GLI3P10071 1580 aa27.95■■■□□ 2.07
LSM6-207ENST00000515311 FCHSD2O94868 740 aa27.95■■■□□ 2.06
LSM6-207ENST00000515311 AEBP1Q8IUX7 1158 aa27.95■■■□□ 2.06
LSM6-207ENST00000515311 CCDC9Q9Y3X0 531 aaKnown RBP27.95■■■□□ 2.06
LSM6-207ENST00000515311 HMOX1P09601 288 aa27.94■■■□□ 2.06
LSM6-207ENST00000515311 TCP11L2Q8N4U5 519 aa27.94■■■□□ 2.06
LSM6-207ENST00000515311 ADAMTS8Q9UP79 889 aa27.94■■■□□ 2.06
LSM6-207ENST00000515311 RSPH6AQ9H0K4 717 aa27.93■■■□□ 2.06
LSM6-207ENST00000515311 QTRT2Q9H974 415 aaKnown RBP27.93■■■□□ 2.06
LSM6-207ENST00000515311 GJD4Q96KN9 370 aaPredicted RBP27.92■■■□□ 2.06
LSM6-207ENST00000515311 USP35Q9P2H5 1018 aa27.92■■■□□ 2.06
LSM6-207ENST00000515311 DISP2A7MBM2 1401 aa27.92■■■□□ 2.06
LSM6-207ENST00000515311 BARGINQ6ZT62 677 aa27.91■■■□□ 2.06
LSM6-207ENST00000515311 PNNQ9H307 717 aaKnown RBP27.91■■■□□ 2.06
LSM6-207ENST00000515311 RAPGEF4Q8WZA2 1011 aa27.9■■■□□ 2.06
LSM6-207ENST00000515311 RGS17Q9UGC6 210 aaPredicted RBP27.9■■■□□ 2.06
LSM6-207ENST00000515311 MEGF6O75095 1541 aa27.9■■■□□ 2.06
LSM6-207ENST00000515311 CDCA7Q9BWT1 371 aaPredicted RBP27.89■■■□□ 2.06
LSM6-207ENST00000515311 PKD1L3Q7Z443 1732 aa27.89■■■□□ 2.05
LSM6-207ENST00000515311 THSD7AQ9UPZ6 1657 aa27.88■■■□□ 2.05
LSM6-207ENST00000515311 OVOS2A0A0G2JMS6 1433 aa27.88■■■□□ 2.05
LSM6-207ENST00000515311 IL2RBP14784 551 aa27.88■■■□□ 2.05
LSM6-207ENST00000515311 FAM9BQ8IZU0 186 aa27.88■■■□□ 2.05
LSM6-207ENST00000515311 PRKAR2BP31323 418 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms