RNA–Protein interactions for RNA: ENST00000514830.5

PDLIM5-220, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-220ENST00000514830 UPF1Q92900 1129 aaKnown RBP eCLIP16.17■□□□□ 0.18
PDLIM5-220ENST00000514830 LRP6O75581 1613 aa16.16■□□□□ 0.18
PDLIM5-220ENST00000514830 CCER2I3L3R5 266 aa16.16■□□□□ 0.18
PDLIM5-220ENST00000514830 TNNT2P45379 298 aaPredicted RBP16.16■□□□□ 0.18
PDLIM5-220ENST00000514830 MTHFSP49914 203 aa16.16■□□□□ 0.18
PDLIM5-220ENST00000514830 IP6K1Q92551 441 aa16.16■□□□□ 0.18
PDLIM5-220ENST00000514830 FBLN1P23142 703 aa16.15■□□□□ 0.18
PDLIM5-220ENST00000514830 HAP1P54257 671 aaPredicted RBP16.15■□□□□ 0.18
PDLIM5-220ENST00000514830 RRS1Q15050 365 aaKnown RBP16.15■□□□□ 0.18
PDLIM5-220ENST00000514830 NRAPQ86VF7 1730 aa16.15■□□□□ 0.18
PDLIM5-220ENST00000514830 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.15■□□□□ 0.18
PDLIM5-220ENST00000514830 EMILIN1Q9Y6C2 1016 aa16.15■□□□□ 0.18
PDLIM5-220ENST00000514830 CAMTA1Q9Y6Y1 1673 aa16.14■□□□□ 0.18
PDLIM5-220ENST00000514830 RGPD1P0DJD0 1748 aa16.14■□□□□ 0.17
PDLIM5-220ENST00000514830 HOXC9P31274 260 aa16.14■□□□□ 0.17
PDLIM5-220ENST00000514830 ZC3H6P61129 1189 aaKnown RBP16.14■□□□□ 0.17
PDLIM5-220ENST00000514830 CNGB1Q14028 1251 aaPredicted RBP16.14■□□□□ 0.17
PDLIM5-220ENST00000514830 SOX12O15370 315 aa16.13■□□□□ 0.17
PDLIM5-220ENST00000514830 MIER1Q8N108 512 aa16.13■□□□□ 0.17
PDLIM5-220ENST00000514830 PRDM11Q9NQV5 511 aa16.13■□□□□ 0.17
PDLIM5-220ENST00000514830 SLIT2O94813 1529 aa16.13■□□□□ 0.17
PDLIM5-220ENST00000514830 FAM83GA6ND36 823 aa16.12■□□□□ 0.17
PDLIM5-220ENST00000514830 AMPHP49418 695 aa16.12■□□□□ 0.17
PDLIM5-220ENST00000514830 CFAP53Q96M91 514 aa16.12■□□□□ 0.17
PDLIM5-220ENST00000514830 COL5A2P05997 1499 aaPredicted RBP16.1■□□□□ 0.17
PDLIM5-220ENST00000514830 NGLY1Q96IV0 654 aa16.1■□□□□ 0.17
PDLIM5-220ENST00000514830 NCAPD2Q15021 1401 aa16.1■□□□□ 0.17
PDLIM5-220ENST00000514830 RGPD2P0DJD1 1756 aa16.09■□□□□ 0.17
PDLIM5-220ENST00000514830 RBM6P78332 1123 aaKnown RBP16.09■□□□□ 0.17
PDLIM5-220ENST00000514830 HSP90AB2PQ58FF8 381 aa16.09■□□□□ 0.17
PDLIM5-220ENST00000514830 AXIN2Q9Y2T1 843 aa16.09■□□□□ 0.17
PDLIM5-220ENST00000514830 ERBB3P21860 1342 aa16.09■□□□□ 0.17
PDLIM5-220ENST00000514830 AFF2P51816 1311 aa16.09■□□□□ 0.17
PDLIM5-220ENST00000514830 FNBP4Q8N3X1 1017 aaPredicted RBP16.08■□□□□ 0.16
PDLIM5-220ENST00000514830 PPM1GO15355 546 aaPredicted RBP16.07■□□□□ 0.16
PDLIM5-220ENST00000514830 DIAPH1O60610 1272 aaKnown RBP16.07■□□□□ 0.16
PDLIM5-220ENST00000514830 PLEKHG5O94827 1062 aa16.07■□□□□ 0.16
PDLIM5-220ENST00000514830 ADAMTS2O95450 1211 aa16.07■□□□□ 0.16
PDLIM5-220ENST00000514830 IL13P35225 146 aa16.07■□□□□ 0.16
PDLIM5-220ENST00000514830 CHRNA2Q15822 529 aa16.07■□□□□ 0.16
PDLIM5-220ENST00000514830 QTRT2Q9H974 415 aaKnown RBP16.07■□□□□ 0.16
PDLIM5-220ENST00000514830 BCL9LQ86UU0 1499 aa16.06■□□□□ 0.16
PDLIM5-220ENST00000514830 WDR17Q8IZU2 1322 aa16.06■□□□□ 0.16
PDLIM5-220ENST00000514830 EIF4A2Q14240 407 aaKnown RBP16.06■□□□□ 0.16
PDLIM5-220ENST00000514830 PLEKHG2Q9H7P9 1386 aa16.05■□□□□ 0.16
PDLIM5-220ENST00000514830 CCDC184Q52MB2 194 aa16.05■□□□□ 0.16
PDLIM5-220ENST00000514830 C8orf37Q96NL8 207 aa16.05■□□□□ 0.16
PDLIM5-220ENST00000514830 MRS2Q9HD23 443 aa16.05■□□□□ 0.16
PDLIM5-220ENST00000514830 WNK3Q9BYP7 1800 aa16.05■□□□□ 0.16
PDLIM5-220ENST00000514830 KDRP35968 1356 aa16.04■□□□□ 0.16
PDLIM5-220ENST00000514830 IGSF1Q8N6C5 1336 aa16.04■□□□□ 0.16
PDLIM5-220ENST00000514830 PNISRQ8TF01 805 aaKnown RBP16.04■□□□□ 0.16
PDLIM5-220ENST00000514830 ANKRD24Q8TF21 1146 aa16.04■□□□□ 0.16
PDLIM5-220ENST00000514830 BTG4Q9NY30 223 aa16.04■□□□□ 0.16
PDLIM5-220ENST00000514830 NUDCQ9Y266 331 aa16.04■□□□□ 0.16
PDLIM5-220ENST00000514830 CRB1P82279 1406 aa16.03■□□□□ 0.16
PDLIM5-220ENST00000514830 ZBTB7CA1YPR0 619 aa16.03■□□□□ 0.16
PDLIM5-220ENST00000514830 UNC5CLQ8IV45 518 aa16.02■□□□□ 0.16
PDLIM5-220ENST00000514830 EYA1Q99502 592 aa16■□□□□ 0.15
PDLIM5-220ENST00000514830 CARD10Q9BWT7 1032 aa16■□□□□ 0.15
PDLIM5-220ENST00000514830 PARP4Q9UKK3 1724 aaKnown RBP15.99■□□□□ 0.15
PDLIM5-220ENST00000514830 VPS72Q15906 364 aa15.99■□□□□ 0.15
PDLIM5-220ENST00000514830 NBPF6Q5VWK0 638 aa15.99■□□□□ 0.15
PDLIM5-220ENST00000514830 NBPF4Q96M43 638 aa15.99■□□□□ 0.15
PDLIM5-220ENST00000514830 ATRNO75882 1429 aa15.99■□□□□ 0.15
PDLIM5-220ENST00000514830 FCHSD2O94868 740 aa15.98■□□□□ 0.15
PDLIM5-220ENST00000514830 EVA1CP58658 441 aa15.98■□□□□ 0.15
PDLIM5-220ENST00000514830 TRPC5Q9UL62 973 aaPredicted RBP15.98■□□□□ 0.15
PDLIM5-220ENST00000514830 PKD1L3Q7Z443 1732 aa15.97■□□□□ 0.15
PDLIM5-220ENST00000514830 WDR43Q15061 677 aaKnown RBP eCLIP15.97■□□□□ 0.15
PDLIM5-220ENST00000514830 LARP1Q6PKG0 1096 aaKnown RBP15.97■□□□□ 0.15
PDLIM5-220ENST00000514830 LTV1Q96GA3 475 aaPredicted RBP15.97■□□□□ 0.15
PDLIM5-220ENST00000514830 USP21Q9UK80 565 aa15.97■□□□□ 0.15
PDLIM5-220ENST00000514830 THRAP3Q9Y2W1 955 aaKnown RBP15.97■□□□□ 0.15
PDLIM5-220ENST00000514830 SPATA31A5Q5VU36 1347 aa15.96■□□□□ 0.15
PDLIM5-220ENST00000514830 SPATA31A7Q8IWB4 1347 aa15.96■□□□□ 0.15
PDLIM5-220ENST00000514830 U2AF1L5P0DN76 240 aaPredicted RBP15.96■□□□□ 0.15
PDLIM5-220ENST00000514830 CSB-PGBD3P0DP91 1061 aa15.96■□□□□ 0.15
PDLIM5-220ENST00000514830 U2AF1Q01081 240 aaKnown RBP eCLIP15.96■□□□□ 0.151e-7■■■■■ 28.2
PDLIM5-220ENST00000514830 TOM1L2Q6ZVM7 507 aa15.96■□□□□ 0.15
PDLIM5-220ENST00000514830 PNNQ9H307 717 aaKnown RBP15.96■□□□□ 0.15
PDLIM5-220ENST00000514830 ADAMTS8Q9UP79 889 aa15.96■□□□□ 0.15
PDLIM5-220ENST00000514830 SPATA31A1Q5TZJ5 1347 aa15.95■□□□□ 0.14
PDLIM5-220ENST00000514830 DISP2A7MBM2 1401 aa15.95■□□□□ 0.14
PDLIM5-220ENST00000514830 U2SURPO15042 1029 aaKnown RBP15.95■□□□□ 0.14
PDLIM5-220ENST00000514830 CCDC125Q86Z20 511 aa15.95■□□□□ 0.14
PDLIM5-220ENST00000514830 RSPH6AQ9H0K4 717 aa15.95■□□□□ 0.14
PDLIM5-220ENST00000514830 STRN4Q9NRL3 753 aa15.95■□□□□ 0.14
PDLIM5-220ENST00000514830 NLRP2Q9NX02 1062 aa15.95■□□□□ 0.14
PDLIM5-220ENST00000514830 GLI3P10071 1580 aa15.95■□□□□ 0.14
PDLIM5-220ENST00000514830 SULT6B1Q6IMI4 303 aa15.94■□□□□ 0.14
PDLIM5-220ENST00000514830 BARGINQ6ZT62 677 aa15.94■□□□□ 0.14
PDLIM5-220ENST00000514830 THSD7AQ9UPZ6 1657 aa15.94■□□□□ 0.14
PDLIM5-220ENST00000514830 PLEKHF1Q96S99 279 aa15.93■□□□□ 0.14
PDLIM5-220ENST00000514830 CDCA7Q9BWT1 371 aaPredicted RBP15.93■□□□□ 0.14
PDLIM5-220ENST00000514830 SHANK3Q9BYB0 1731 aa15.93■□□□□ 0.14
PDLIM5-220ENST00000514830 OVOS2A0A0G2JMS6 1433 aa15.93■□□□□ 0.14
PDLIM5-220ENST00000514830 RGS12O14924 1447 aa15.93■□□□□ 0.14
PDLIM5-220ENST00000514830 AEBP1Q8IUX7 1158 aa15.92■□□□□ 0.14
PDLIM5-220ENST00000514830 TCP11L2Q8N4U5 519 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms