RNA–Protein interactions for RNA: ENST00000511985.1

PDGFC-207, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 725 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-207ENST00000511985 CCDC116Q8IYX3 515 aa12.49□□□□□ -0.41
PDGFC-207ENST00000511985 GPSM3Q9Y4H4 160 aa12.49□□□□□ -0.41
PDGFC-207ENST00000511985 LCE2AQ5TA79 106 aaPredicted RBP12.48□□□□□ -0.41
PDGFC-207ENST00000511985 KCTD15Q96SI1 283 aaPredicted RBP12.48□□□□□ -0.41
PDGFC-207ENST00000511985 SCARF1Q14162 830 aa12.47□□□□□ -0.41
PDGFC-207ENST00000511985 PNMA1Q8ND90 353 aa12.47□□□□□ -0.41
PDGFC-207ENST00000511985 GJD4Q96KN9 370 aaPredicted RBP12.47□□□□□ -0.41
PDGFC-207ENST00000511985 NFX1Q12986 1120 aaKnown RBP12.46□□□□□ -0.41
PDGFC-207ENST00000511985 C6orf118Q5T5N4 469 aa12.46□□□□□ -0.41
PDGFC-207ENST00000511985 WFS1O76024 890 aa12.45□□□□□ -0.42
PDGFC-207ENST00000511985 PPP1R26Q5T8A7 1209 aaPredicted RBP12.45□□□□□ -0.42
PDGFC-207ENST00000511985 EMILIN1Q9Y6C2 1016 aa12.45□□□□□ -0.42
PDGFC-207ENST00000511985 MEIOBQ8N635 442 aa12.44□□□□□ -0.42
PDGFC-207ENST00000511985 SOBPA7XYQ1 873 aa12.43□□□□□ -0.42
PDGFC-207ENST00000511985 TERTO14746 1132 aaKnown RBP12.43□□□□□ -0.42
PDGFC-207ENST00000511985 INTS6LQ5JSJ4 861 aaKnown RBP12.43□□□□□ -0.42
PDGFC-207ENST00000511985 CDV3Q9UKY7 258 aaKnown RBP12.43□□□□□ -0.42
PDGFC-207ENST00000511985 LINC00528Q8N1L1 170 aa12.42□□□□□ -0.42
PDGFC-207ENST00000511985 CBLBQ13191 982 aa12.41□□□□□ -0.42
PDGFC-207ENST00000511985 DZIP3Q86Y13 1208 aaKnown RBP12.41□□□□□ -0.42
PDGFC-207ENST00000511985 BMP2P12643 396 aa12.4□□□□□ -0.42
PDGFC-207ENST00000511985 RAB15P59190 212 aa12.4□□□□□ -0.42
PDGFC-207ENST00000511985 TMEM132AQ24JP5 1023 aa12.4□□□□□ -0.42
PDGFC-207ENST00000511985 LCE2CQ5TA81 110 aa12.4□□□□□ -0.42
PDGFC-207ENST00000511985 BANK1Q8NDB2 785 aa12.4□□□□□ -0.42
PDGFC-207ENST00000511985 SNRKQ9NRH2 765 aa12.4□□□□□ -0.42
PDGFC-207ENST00000511985 MTMR14Q8NCE2 650 aa12.39□□□□□ -0.43
PDGFC-207ENST00000511985 PGPEP1Q9NXJ5 209 aa12.39□□□□□ -0.43
PDGFC-207ENST00000511985 UPP2O95045 317 aa12.38□□□□□ -0.43
PDGFC-207ENST00000511985 VEGFBP49765 207 aa12.38□□□□□ -0.43
PDGFC-207ENST00000511985 NXF1Q9UBU9 619 aaKnown RBP12.38□□□□□ -0.43
PDGFC-207ENST00000511985 ZBBXA8MT70 800 aa12.37□□□□□ -0.43
PDGFC-207ENST00000511985 FBXO45P0C2W1 286 aa12.37□□□□□ -0.43
PDGFC-207ENST00000511985 DHX9Q08211 1270 aaKnown RBP12.37□□□□□ -0.43
PDGFC-207ENST00000511985 NBPF20Q3BBV1 942 aa12.37□□□□□ -0.43
PDGFC-207ENST00000511985 TMPRSS4Q9NRS4 437 aa12.37□□□□□ -0.43
PDGFC-207ENST00000511985 Q6ZVU0 165 aa12.35□□□□□ -0.43
PDGFC-207ENST00000511985 TSEN34Q9BSV6 310 aaKnown RBP12.35□□□□□ -0.43
PDGFC-207ENST00000511985 GPR37L1O60883 481 aa12.34□□□□□ -0.43
PDGFC-207ENST00000511985 PCDHB9Q9Y5E1 797 aa12.34□□□□□ -0.43
PDGFC-207ENST00000511985 MAN1A2O60476 641 aa12.33□□□□□ -0.44
PDGFC-207ENST00000511985 ERVH48-1M5A8F1 160 aa12.32□□□□□ -0.44
PDGFC-207ENST00000511985 ZNF784Q8NCA9 323 aaPredicted RBP12.32□□□□□ -0.44
PDGFC-207ENST00000511985 AGBL1Q96MI9 1066 aa12.32□□□□□ -0.44
PDGFC-207ENST00000511985 SOS2Q07890 1332 aaPredicted RBP12.32□□□□□ -0.44
PDGFC-207ENST00000511985 ESPNB1AK53 854 aa12.31□□□□□ -0.44
PDGFC-207ENST00000511985 DNMT3LQ9UJW3 386 aa12.31□□□□□ -0.44
PDGFC-207ENST00000511985 NDUFB9Q9Y6M9 179 aa12.31□□□□□ -0.44
PDGFC-207ENST00000511985 GIGYF1O75420 1035 aaPredicted RBP12.3□□□□□ -0.44
PDGFC-207ENST00000511985 SLC16A10Q8TF71 515 aa12.3□□□□□ -0.44
PDGFC-207ENST00000511985 SOCS7O14512 581 aa12.29□□□□□ -0.44
PDGFC-207ENST00000511985 ADD1P35611 737 aaKnown RBP12.28□□□□□ -0.44
PDGFC-207ENST00000511985 RELBQ01201 579 aa12.28□□□□□ -0.44
PDGFC-207ENST00000511985 NR1H3Q13133 447 aa12.28□□□□□ -0.44
PDGFC-207ENST00000511985 TTLL8A6PVC2 850 aa12.27□□□□□ -0.45
PDGFC-207ENST00000511985 H3BM21 787 aa12.27□□□□□ -0.45
PDGFC-207ENST00000511985 SPINT1O43278 529 aa12.27□□□□□ -0.45
PDGFC-207ENST00000511985 LILRA1O75019 489 aa12.27□□□□□ -0.45
PDGFC-207ENST00000511985 NPAS3Q8IXF0 933 aa12.27□□□□□ -0.45
PDGFC-207ENST00000511985 FIGNL2A6NMB9 653 aa12.26□□□□□ -0.45
PDGFC-207ENST00000511985 WIPF1O43516 503 aa12.25□□□□□ -0.45
PDGFC-207ENST00000511985 SEPT12Q8IYM1 358 aa12.25□□□□□ -0.45
PDGFC-207ENST00000511985 ZNF395Q9H8N7 513 aaPredicted RBP12.25□□□□□ -0.45
PDGFC-207ENST00000511985 CYLDQ9NQC7 956 aa12.25□□□□□ -0.45
PDGFC-207ENST00000511985 TBC1D2BQ9UPU7 963 aa12.25□□□□□ -0.45
PDGFC-207ENST00000511985 ERBB4Q15303 1308 aa12.25□□□□□ -0.45
PDGFC-207ENST00000511985 APBB1O00213 710 aa12.23□□□□□ -0.45
PDGFC-207ENST00000511985 CTSOP43234 321 aaPredicted RBP12.23□□□□□ -0.45
PDGFC-207ENST00000511985 IRF7Q92985 503 aa12.23□□□□□ -0.45
PDGFC-207ENST00000511985 INSM2Q96T92 566 aaPredicted RBP12.23□□□□□ -0.45
PDGFC-207ENST00000511985 ADH1AP07327 375 aa12.22□□□□□ -0.45
PDGFC-207ENST00000511985 GMPRP36959 345 aa12.22□□□□□ -0.45
PDGFC-207ENST00000511985 KDF1Q8NAX2 398 aaPredicted RBP12.22□□□□□ -0.45
PDGFC-207ENST00000511985 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.21□□□□□ -0.45
PDGFC-207ENST00000511985 POLMQ9NP87 494 aaPredicted RBP12.2□□□□□ -0.46
PDGFC-207ENST00000511985 PPFIA3O75145 1194 aa12.19□□□□□ -0.46
PDGFC-207ENST00000511985 ZNF330Q9Y3S2 320 aaPredicted RBP12.19□□□□□ -0.46
PDGFC-207ENST00000511985 PTGIRP43119 386 aa12.18□□□□□ -0.46
PDGFC-207ENST00000511985 PTSQ03393 145 aa12.17□□□□□ -0.46
PDGFC-207ENST00000511985 MCCD1P59942 119 aaPredicted RBP12.16□□□□□ -0.46
PDGFC-207ENST00000511985 IRF5Q13568 498 aa12.16□□□□□ -0.46
PDGFC-207ENST00000511985 RNF20Q5VTR2 975 aa12.16□□□□□ -0.46
PDGFC-207ENST00000511985 INSM1Q01101 510 aaPredicted RBP12.15□□□□□ -0.46
PDGFC-207ENST00000511985 RNF217Q8TC41 542 aa12.15□□□□□ -0.46
PDGFC-207ENST00000511985 SCTRP47872 440 aa12.14□□□□□ -0.47
PDGFC-207ENST00000511985 FOXD4L5Q5VV16 416 aaPredicted RBP12.14□□□□□ -0.47
PDGFC-207ENST00000511985 GDPD2Q9HCC8 539 aa12.14□□□□□ -0.47
PDGFC-207ENST00000511985 PRM3Q9NNZ6 103 aa12.14□□□□□ -0.47
PDGFC-207ENST00000511985 PCDHB11Q9Y5F2 797 aa12.14□□□□□ -0.47
PDGFC-207ENST00000511985 ATP5J2-PTCD1G3V325 749 aa12.13□□□□□ -0.47
PDGFC-207ENST00000511985 ERVK-9P63128 1117 aa12.13□□□□□ -0.47
PDGFC-207ENST00000511985 CC2D2BQ6DHV5 1058 aa12.13□□□□□ -0.47
PDGFC-207ENST00000511985 VSIG8P0DPA2 414 aa12.12□□□□□ -0.47
PDGFC-207ENST00000511985 ZNF592Q92610 1267 aa12.12□□□□□ -0.47
PDGFC-207ENST00000511985 CEP126Q9P2H0 1117 aa12.12□□□□□ -0.47
PDGFC-207ENST00000511985 ABL2P42684 1182 aa12.11□□□□□ -0.47
PDGFC-207ENST00000511985 VAC14Q08AM6 782 aa12.11□□□□□ -0.47
PDGFC-207ENST00000511985 MCM6Q14566 821 aa12.11□□□□□ -0.47
PDGFC-207ENST00000511985 CCDC155Q8N6L0 562 aa12.11□□□□□ -0.47
PDGFC-207ENST00000511985 SLC35F4A4IF30 521 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms