RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ARHGAP31Q2M1Z3 1444 aa14.49□□□□□ -0.09
LIMCH1-213ENST00000511496 LRMPQ12912 555 aa14.48□□□□□ -0.09
LIMCH1-213ENST00000511496 ELF2Q15723 593 aa14.48□□□□□ -0.09
LIMCH1-213ENST00000511496 NOL8Q76FK4 1167 aaKnown RBP14.48□□□□□ -0.09
LIMCH1-213ENST00000511496 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.48□□□□□ -0.09
LIMCH1-213ENST00000511496 UHRF1BP1Q6BDS2 1440 aa14.48□□□□□ -0.09
LIMCH1-213ENST00000511496 NUCB1Q02818 461 aa14.48□□□□□ -0.09
LIMCH1-213ENST00000511496 CCDC191Q8NCU4 936 aa14.48□□□□□ -0.09
LIMCH1-213ENST00000511496 POLKQ9UBT6 870 aa14.48□□□□□ -0.09
LIMCH1-213ENST00000511496 AP5Z1O43299 807 aa14.47□□□□□ -0.09
LIMCH1-213ENST00000511496 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.47□□□□□ -0.09
LIMCH1-213ENST00000511496 SLC26A8Q96RN1 970 aa14.47□□□□□ -0.09
LIMCH1-213ENST00000511496 TESK2Q96S53 571 aa14.47□□□□□ -0.09
LIMCH1-213ENST00000511496 ZNF446Q9NWS9 450 aa14.47□□□□□ -0.09
LIMCH1-213ENST00000511496 ST18O60284 1047 aa14.47□□□□□ -0.09
LIMCH1-213ENST00000511496 PZPP20742 1482 aa14.47□□□□□ -0.09
LIMCH1-213ENST00000511496 BRPF1P55201 1214 aaPredicted RBP14.47□□□□□ -0.09
LIMCH1-213ENST00000511496 REC8O95072 547 aa14.46□□□□□ -0.09
LIMCH1-213ENST00000511496 CTR9Q6PD62 1173 aa14.46□□□□□ -0.09
LIMCH1-213ENST00000511496 NFATC2IPQ8NCF5 419 aa14.46□□□□□ -0.09
LIMCH1-213ENST00000511496 DDX19BQ9UMR2 479 aa14.46□□□□□ -0.09
LIMCH1-213ENST00000511496 TEX35Q5T0J7 233 aa14.46□□□□□ -0.1
LIMCH1-213ENST00000511496 PAXBP1Q9Y5B6 917 aa14.46□□□□□ -0.1
LIMCH1-213ENST00000511496 LRRFIP2Q9Y608 721 aaKnown RBP14.46□□□□□ -0.1
LIMCH1-213ENST00000511496 TPM3P06753 285 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 GUCY2CP25092 1073 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 E2F4Q16254 413 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 CCDC186Q7Z3E2 898 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 JRKLQ9Y4A0 524 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 CEP83Q9Y592 693 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 UGGT2Q9NYU1 1516 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 SNAPC4Q5SXM2 1469 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 FAM135AQ9P2D6 1515 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 TMED8Q6PL24 325 aaPredicted RBP14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 USP48Q86UV5 1035 aa14.45□□□□□ -0.1
LIMCH1-213ENST00000511496 BMS1Q14692 1282 aaKnown RBP14.44□□□□□ -0.1
LIMCH1-213ENST00000511496 TCOF1Q13428 1488 aaKnown RBP14.44□□□□□ -0.1
LIMCH1-213ENST00000511496 TRIM27P14373 513 aa14.44□□□□□ -0.1
LIMCH1-213ENST00000511496 CDC45O75419 566 aa14.44□□□□□ -0.1
LIMCH1-213ENST00000511496 GIMAP6Q6P9H5 292 aa14.44□□□□□ -0.1
LIMCH1-213ENST00000511496 KIF1BPQ96EK5 621 aa14.44□□□□□ -0.1
LIMCH1-213ENST00000511496 CCDC172P0C7W6 258 aa14.43□□□□□ -0.1
LIMCH1-213ENST00000511496 CEP135Q66GS9 1140 aa14.43□□□□□ -0.1
LIMCH1-213ENST00000511496 CREBRFQ8IUR6 639 aa14.43□□□□□ -0.1
LIMCH1-213ENST00000511496 GOLGA6L1Q8N7Z2 621 aa14.43□□□□□ -0.1
LIMCH1-213ENST00000511496 PRDM2Q13029 1718 aa14.43□□□□□ -0.1
LIMCH1-213ENST00000511496 ZSCAN26Q16670 478 aa14.43□□□□□ -0.1
LIMCH1-213ENST00000511496 TMEM57Q8N5G2 664 aa14.43□□□□□ -0.1
LIMCH1-213ENST00000511496 CARD10Q9BWT7 1032 aa14.43□□□□□ -0.1
LIMCH1-213ENST00000511496 ZNF777Q9ULD5 760 aaPredicted RBP14.43□□□□□ -0.1
LIMCH1-213ENST00000511496 ST5P78524 1137 aa14.42□□□□□ -0.1
LIMCH1-213ENST00000511496 TXLNBQ8N3L3 684 aa14.42□□□□□ -0.1
LIMCH1-213ENST00000511496 DAPK1P53355 1430 aa14.42□□□□□ -0.1
LIMCH1-213ENST00000511496 ANKRD36BQ8N2N9 1353 aa14.42□□□□□ -0.1
LIMCH1-213ENST00000511496 TCP11L2Q8N4U5 519 aa14.42□□□□□ -0.1
LIMCH1-213ENST00000511496 NRBP1Q9UHY1 535 aa14.42□□□□□ -0.1
LIMCH1-213ENST00000511496 EHBP1L1Q8N3D4 1523 aa14.42□□□□□ -0.1
LIMCH1-213ENST00000511496 TRHP20396 242 aaPredicted RBP14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 CCDC183Q5T5S1 534 aa14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 ATAD2BQ9ULI0 1458 aa14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 FAM53CQ9NYF3 392 aa14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 DNAJC21Q5F1R6 531 aaKnown RBP14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 FAM212AQ96EL1 285 aa14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 DEF6Q9H4E7 631 aa14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 C1orf115Q9H7X2 142 aa14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 ZCCHC17Q9NP64 241 aaKnown RBP14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 ERBINQ96RT1 1412 aa14.41□□□□□ -0.1
LIMCH1-213ENST00000511496 HTATSF1O43719 755 aaKnown RBP14.4□□□□□ -0.1
LIMCH1-213ENST00000511496 TSR2Q969E8 191 aaKnown RBP14.4□□□□□ -0.1
LIMCH1-213ENST00000511496 SMARCE1Q969G3 411 aa14.4□□□□□ -0.1
LIMCH1-213ENST00000511496 ABCC5O15440 1437 aa14.4□□□□□ -0.1
LIMCH1-213ENST00000511496 NUP155O75694 1391 aa14.4□□□□□ -0.1
LIMCH1-213ENST00000511496 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.4□□□□□ -0.1
LIMCH1-213ENST00000511496 USP26Q9BXU7 913 aa14.4□□□□□ -0.1
LIMCH1-213ENST00000511496 BRMS1Q9HCU9 246 aa14.4□□□□□ -0.1
LIMCH1-213ENST00000511496 ROCK1Q13464 1354 aa14.39□□□□□ -0.11
LIMCH1-213ENST00000511496 NOB1Q9ULX3 412 aaKnown RBP14.39□□□□□ -0.11
LIMCH1-213ENST00000511496 CWC15Q9P013 229 aaKnown RBP14.39□□□□□ -0.11
LIMCH1-213ENST00000511496 KIAA0586Q9BVV6 1533 aa14.39□□□□□ -0.11
LIMCH1-213ENST00000511496 MX1P20591 662 aa14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 NEK4P51957 841 aa14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 TTC31Q49AM3 519 aaPredicted RBP14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 EXOC6BQ9Y2D4 811 aa14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 RRP15Q9Y3B9 282 aaKnown RBP14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 MAGI3Q5TCQ9 1506 aa14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 COL17A1Q9UMD9 1497 aaPredicted RBP14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 BRD1O95696 1058 aa14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 GPS2Q13227 327 aa14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 CLASP1Q7Z460 1538 aa14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 A0A1B0GUL7 405 aa14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 ERCC6LQ2NKX8 1250 aa14.38□□□□□ -0.11
LIMCH1-213ENST00000511496 MUM1L1Q5H9M0 696 aa14.37□□□□□ -0.11
LIMCH1-213ENST00000511496 ATF7IPQ6VMQ6 1270 aa14.37□□□□□ -0.11
LIMCH1-213ENST00000511496 ZBTB40Q9NUA8 1239 aa14.37□□□□□ -0.11
LIMCH1-213ENST00000511496 TRMT1Q9NXH9 659 aaKnown RBP14.37□□□□□ -0.11
LIMCH1-213ENST00000511496 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.37□□□□□ -0.11
LIMCH1-213ENST00000511496 PLA2G4AP47712 749 aa14.37□□□□□ -0.11
LIMCH1-213ENST00000511496 TPM4P67936 248 aa14.37□□□□□ -0.11
LIMCH1-213ENST00000511496 TMX3Q96JJ7 454 aa14.37□□□□□ -0.11
LIMCH1-213ENST00000511496 MAGI2Q86UL8 1455 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms