RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 METP08581 1390 aa12.54□□□□□ -0.4
USP53-207ENST00000510852 STK26Q9P289 416 aa12.54□□□□□ -0.4
USP53-207ENST00000510852 MED14O60244 1454 aa12.54□□□□□ -0.4
USP53-207ENST00000510852 CDCA8Q53HL2 280 aa12.53□□□□□ -0.4
USP53-207ENST00000510852 ZNF622Q969S3 477 aaKnown RBP eCLIP12.53□□□□□ -0.4
USP53-207ENST00000510852 TBX22Q9Y458 520 aa12.53□□□□□ -0.4
USP53-207ENST00000510852 YTHDC2Q9H6S0 1430 aaKnown RBP12.53□□□□□ -0.4
USP53-207ENST00000510852 MAP4K4O95819 1239 aaPredicted RBP12.53□□□□□ -0.4
USP53-207ENST00000510852 SETD1AO15047 1707 aaKnown RBP12.53□□□□□ -0.4
USP53-207ENST00000510852 EIF3AQ14152 1382 aaKnown RBP12.52□□□□□ -0.4
USP53-207ENST00000510852 NPHP4O75161 1426 aaPredicted RBP12.52□□□□□ -0.4
USP53-207ENST00000510852 PPFIA4O75335 1185 aa12.52□□□□□ -0.41
USP53-207ENST00000510852 TSHZ1Q6ZSZ6 1077 aa12.52□□□□□ -0.41
USP53-207ENST00000510852 LRPPRCP42704 1394 aaKnown RBP12.52□□□□□ -0.41
USP53-207ENST00000510852 STK24Q9Y6E0 443 aa12.51□□□□□ -0.41
USP53-207ENST00000510852 SREK1Q8WXA9 508 aaKnown RBP12.5□□□□□ -0.41
USP53-207ENST00000510852 MTA3Q9BTC8 594 aa12.5□□□□□ -0.41
USP53-207ENST00000510852 DIP2AQ14689 1571 aa12.5□□□□□ -0.41
USP53-207ENST00000510852 MYBPC2Q14324 1141 aa12.5□□□□□ -0.41
USP53-207ENST00000510852 TESK2Q96S53 571 aa12.5□□□□□ -0.41
USP53-207ENST00000510852 ABCC11Q96J66 1382 aa12.5□□□□□ -0.41
USP53-207ENST00000510852 POLR1AO95602 1720 aaPredicted RBP12.49□□□□□ -0.41
USP53-207ENST00000510852 C11orf95C9JLR9 678 aaPredicted RBP12.49□□□□□ -0.41
USP53-207ENST00000510852 ERCC3P19447 782 aa12.49□□□□□ -0.41
USP53-207ENST00000510852 RTL5Q5HYW3 569 aaPredicted RBP12.49□□□□□ -0.41
USP53-207ENST00000510852 PPP1R1BQ9UD71 204 aaPredicted RBP12.49□□□□□ -0.41
USP53-207ENST00000510852 CENPJQ9HC77 1338 aaPredicted RBP12.49□□□□□ -0.41
USP53-207ENST00000510852 PTPRUQ92729 1446 aa12.49□□□□□ -0.41
USP53-207ENST00000510852 MCCD1P59942 119 aaPredicted RBP12.48□□□□□ -0.41
USP53-207ENST00000510852 SEMA3EO15041 775 aa12.48□□□□□ -0.41
USP53-207ENST00000510852 PRAM1Q96QH2 718 aa12.47□□□□□ -0.41
USP53-207ENST00000510852 PIK3R4Q99570 1358 aa12.47□□□□□ -0.41
USP53-207ENST00000510852 TECPR2O15040 1411 aa12.47□□□□□ -0.41
USP53-207ENST00000510852 WASHC2AQ641Q2 1341 aa12.47□□□□□ -0.41
USP53-207ENST00000510852 MRRFQ96E11 262 aaKnown RBP12.47□□□□□ -0.41
USP53-207ENST00000510852 POGKQ9P215 609 aa12.47□□□□□ -0.41
USP53-207ENST00000510852 DLC1Q96QB1 1528 aa12.46□□□□□ -0.41
USP53-207ENST00000510852 SAFB2Q14151 953 aaKnown RBP eCLIP12.46□□□□□ -0.41
USP53-207ENST00000510852 AK7Q96M32 723 aa12.46□□□□□ -0.41
USP53-207ENST00000510852 ARHGEF28Q8N1W1 1705 aaKnown RBP12.46□□□□□ -0.41
USP53-207ENST00000510852 CCER2I3L3R5 266 aa12.46□□□□□ -0.42
USP53-207ENST00000510852 LONRF3Q496Y0 759 aa12.46□□□□□ -0.42
USP53-207ENST00000510852 WAPLQ7Z5K2 1190 aa12.46□□□□□ -0.42
USP53-207ENST00000510852 PROSER2Q86WR7 435 aaPredicted RBP12.46□□□□□ -0.42
USP53-207ENST00000510852 MORC4Q8TE76 937 aa12.46□□□□□ -0.42
USP53-207ENST00000510852 KIF7Q2M1P5 1343 aa12.45□□□□□ -0.42
USP53-207ENST00000510852 SOX12O15370 315 aa12.45□□□□□ -0.42
USP53-207ENST00000510852 TMF1P82094 1093 aa12.45□□□□□ -0.42
USP53-207ENST00000510852 FNBP4Q8N3X1 1017 aaPredicted RBP12.45□□□□□ -0.42
USP53-207ENST00000510852 CCDC7Q96M83 1385 aa12.45□□□□□ -0.42
USP53-207ENST00000510852 ROBO2Q9HCK4 1378 aa12.45□□□□□ -0.42
USP53-207ENST00000510852 PLEKHH1Q9ULM0 1364 aa12.45□□□□□ -0.42
USP53-207ENST00000510852 RBM47A0AV96 593 aaKnown RBP12.45□□□□□ -0.42
USP53-207ENST00000510852 KRBA2Q6ZNG9 492 aa12.45□□□□□ -0.42
USP53-207ENST00000510852 KLHL42Q9P2K6 505 aa12.45□□□□□ -0.42
USP53-207ENST00000510852 DISP3Q9P2K9 1392 aa12.44□□□□□ -0.42
USP53-207ENST00000510852 SBNO2Q9Y2G9 1366 aa12.44□□□□□ -0.42
USP53-207ENST00000510852 FAM135BQ49AJ0 1406 aa12.44□□□□□ -0.42
USP53-207ENST00000510852 KCNA6P17658 529 aa12.43□□□□□ -0.42
USP53-207ENST00000510852 CNGB1Q14028 1251 aaPredicted RBP12.43□□□□□ -0.42
USP53-207ENST00000510852 STRCQ7RTU9 1775 aa12.43□□□□□ -0.42
USP53-207ENST00000510852 KNDC1Q76NI1 1749 aa12.43□□□□□ -0.42
USP53-207ENST00000510852 CPS1P31327 1500 aa12.43□□□□□ -0.42
USP53-207ENST00000510852 PLEKHG3A1L390 1219 aa12.42□□□□□ -0.42
USP53-207ENST00000510852 KCNA1Q09470 495 aa12.42□□□□□ -0.42
USP53-207ENST00000510852 VTI1AQ96AJ9 217 aa12.42□□□□□ -0.42
USP53-207ENST00000510852 CDCA7Q9BWT1 371 aaPredicted RBP12.42□□□□□ -0.42
USP53-207ENST00000510852 UBA5Q9GZZ9 404 aa12.42□□□□□ -0.42
USP53-207ENST00000510852 PNMA2Q9UL42 364 aa12.42□□□□□ -0.42
USP53-207ENST00000510852 PTCH1Q13635 1447 aa12.42□□□□□ -0.42
USP53-207ENST00000510852 POM121Q96HA1 1249 aa12.42□□□□□ -0.42
USP53-207ENST00000510852 QRICH2Q9H0J4 1663 aa12.42□□□□□ -0.42
USP53-207ENST00000510852 MINK1Q8N4C8 1332 aaPredicted RBP12.42□□□□□ -0.42
USP53-207ENST00000510852 XRN1Q8IZH2 1706 aaKnown RBP12.41□□□□□ -0.42
USP53-207ENST00000510852 PAX3P23760 479 aa12.41□□□□□ -0.42
USP53-207ENST00000510852 DDX10Q13206 875 aaKnown RBP12.41□□□□□ -0.42
USP53-207ENST00000510852 SND1Q7KZF4 910 aaKnown RBP eCLIP12.41□□□□□ -0.42
USP53-207ENST00000510852 MMP14P50281 582 aa12.4□□□□□ -0.42
USP53-207ENST00000510852 ZFYVE27Q5T4F4 411 aa12.4□□□□□ -0.42
USP53-207ENST00000510852 GPATCH3Q96I76 525 aa12.4□□□□□ -0.42
USP53-207ENST00000510852 CHD2O14647 1828 aaKnown RBP12.4□□□□□ -0.42
USP53-207ENST00000510852 EVC2Q86UK5 1308 aa12.4□□□□□ -0.43
USP53-207ENST00000510852 IVNS1ABPQ9Y6Y0 642 aa12.39□□□□□ -0.43
USP53-207ENST00000510852 CREB3O43889 395 aa12.39□□□□□ -0.43
USP53-207ENST00000510852 PDE4DQ08499 809 aa12.39□□□□□ -0.43
USP53-207ENST00000510852 PLSCR2Q9NRY7 297 aa12.39□□□□□ -0.43
USP53-207ENST00000510852 DMRT2Q9Y5R5 561 aa12.39□□□□□ -0.43
USP53-207ENST00000510852 TSR1Q2NL82 804 aaKnown RBP12.38□□□□□ -0.43
USP53-207ENST00000510852 TULP4Q9NRJ4 1543 aa12.38□□□□□ -0.43
USP53-207ENST00000510852 CARNS1A5YM72 827 aa12.38□□□□□ -0.43
USP53-207ENST00000510852 TTC36A6NLP5 189 aa12.38□□□□□ -0.43
USP53-207ENST00000510852 RNF25Q96BH1 459 aaPredicted RBP12.38□□□□□ -0.43
USP53-207ENST00000510852 NWD1Q149M9 1564 aa12.37□□□□□ -0.43
USP53-207ENST00000510852 MCM6Q14566 821 aa12.37□□□□□ -0.43
USP53-207ENST00000510852 DIEXFQ68CQ4 756 aaKnown RBP12.37□□□□□ -0.43
USP53-207ENST00000510852 SDR16C5Q8N3Y7 309 aa12.37□□□□□ -0.43
USP53-207ENST00000510852 SH3BP1Q9Y3L3 701 aa12.37□□□□□ -0.43
USP53-207ENST00000510852 POLA2Q14181 598 aa12.37□□□□□ -0.43
USP53-207ENST00000510852 CCDC96Q2M329 555 aa12.37□□□□□ -0.43
USP53-207ENST00000510852 MAMSTRQ6ZN01 415 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms