RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 GPSM3Q9Y4H4 160 aa7.01□□□□□ -1.29
USP53-204ENST00000507906 USP17L15C9J2P7 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L10C9JJH3 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L13C9JLJ4 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L12C9JPN9 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L11C9JVI0 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L21D6R901 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L18D6R9N7 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L22D6RA61 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L17D6RBQ6 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L19D6RCP7 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L20D6RJB6 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 SCNN1AP37088 669 aa7□□□□□ -1.29
USP53-204ENST00000507906 USP17L24Q0WX57 530 aa7□□□□□ -1.29
USP53-204ENST00000507906 TRAF7Q6Q0C0 670 aa7□□□□□ -1.29
USP53-204ENST00000507906 PLPP7Q8NBV4 271 aa7□□□□□ -1.29
USP53-204ENST00000507906 MTRQ99707 1265 aa7□□□□□ -1.29
USP53-204ENST00000507906 ZPR1O75312 459 aa6.99□□□□□ -1.29
USP53-204ENST00000507906 DKK1O94907 266 aa6.99□□□□□ -1.29
USP53-204ENST00000507906 CLDN10P78369 228 aa6.99□□□□□ -1.29
USP53-204ENST00000507906 RNF135Q8IUD6 432 aa6.99□□□□□ -1.29
USP53-204ENST00000507906 CCDC85AQ96PX6 553 aaPredicted RBP6.99□□□□□ -1.29
USP53-204ENST00000507906 UNC93B1Q9H1C4 597 aa6.99□□□□□ -1.29
USP53-204ENST00000507906 FAM196BA6NMK8 535 aa6.98□□□□□ -1.29
USP53-204ENST00000507906 RASA1P20936 1047 aa6.98□□□□□ -1.29
USP53-204ENST00000507906 SLFNL1Q499Z3 407 aa6.98□□□□□ -1.29
USP53-204ENST00000507906 C4orf48Q5BLP8 95 aa6.98□□□□□ -1.29
USP53-204ENST00000507906 TJAP1Q5JTD0 557 aa6.98□□□□□ -1.29
USP53-204ENST00000507906 TXNDC2Q86VQ3 553 aa6.98□□□□□ -1.29
USP53-204ENST00000507906 ARMC2Q8NEN0 867 aa6.98□□□□□ -1.29
USP53-204ENST00000507906 NKX2-3Q8TAU0 364 aa6.98□□□□□ -1.29
USP53-204ENST00000507906 ARHGAP9Q9BRR9 750 aa6.98□□□□□ -1.29
USP53-204ENST00000507906 GNEQ9Y223 722 aaKnown RBP6.98□□□□□ -1.29
USP53-204ENST00000507906 PATL2C9JE40 543 aaKnown RBP6.97□□□□□ -1.29
USP53-204ENST00000507906 ZBTB7BO15156 539 aaPredicted RBP6.97□□□□□ -1.29
USP53-204ENST00000507906 GIGYF1O75420 1035 aaPredicted RBP6.97□□□□□ -1.29
USP53-204ENST00000507906 ADH1BP00325 375 aa6.97□□□□□ -1.29
USP53-204ENST00000507906 SSFA2P28290 1259 aa6.97□□□□□ -1.29
USP53-204ENST00000507906 SND1Q7KZF4 910 aaKnown RBP eCLIP6.97□□□□□ -1.29
USP53-204ENST00000507906 SH3RF1Q7Z6J0 888 aa6.97□□□□□ -1.29
USP53-204ENST00000507906 CCDC24Q8N4L8 307 aa6.97□□□□□ -1.29
USP53-204ENST00000507906 BAP1Q92560 729 aa6.97□□□□□ -1.29
USP53-204ENST00000507906 GPKOWQ92917 476 aaPredicted RBP eCLIP6.97□□□□□ -1.29
USP53-204ENST00000507906 FOXJ1Q92949 421 aa6.97□□□□□ -1.29
USP53-204ENST00000507906 KIAA1024Q9UPX6 916 aa6.97□□□□□ -1.29
USP53-204ENST00000507906 NBPF14Q5TI25 921 aa6.96□□□□□ -1.3
USP53-204ENST00000507906 CDCA7Q9BWT1 371 aaPredicted RBP6.96□□□□□ -1.3
USP53-204ENST00000507906 CARD14Q9BXL6 1004 aa6.96□□□□□ -1.3
USP53-204ENST00000507906 DPYDQ12882 1025 aa6.95□□□□□ -1.3
USP53-204ENST00000507906 PPP1R18Q6NYC8 613 aa6.95□□□□□ -1.3
USP53-204ENST00000507906 ANKMY2Q8IV38 441 aa6.95□□□□□ -1.3
USP53-204ENST00000507906 OGFOD1Q8N543 542 aa6.95□□□□□ -1.3
USP53-204ENST00000507906 ZNF594Q96JF6 807 aaPredicted RBP6.95□□□□□ -1.3
USP53-204ENST00000507906 PRKD2Q9BZL6 878 aa6.95□□□□□ -1.3
USP53-204ENST00000507906 MAGEB6P1A0A0J9YX57 407 aa6.94□□□□□ -1.3
USP53-204ENST00000507906 LINC01559Q495D7 138 aa6.94□□□□□ -1.3
USP53-204ENST00000507906 ERFEQ4G0M1 354 aa6.94□□□□□ -1.3
USP53-204ENST00000507906 NOM1Q5C9Z4 860 aaKnown RBP6.94□□□□□ -1.3
USP53-204ENST00000507906 LARP1Q6PKG0 1096 aaKnown RBP6.94□□□□□ -1.3
USP53-204ENST00000507906 ZBTB33Q86T24 672 aa6.94□□□□□ -1.3
USP53-204ENST00000507906 FAM200AQ8TCP9 573 aa6.94□□□□□ -1.3
USP53-204ENST00000507906 ATP5J2-PTCD1G3V325 749 aa6.93□□□□□ -1.3
USP53-204ENST00000507906 LCE2BO14633 110 aa6.93□□□□□ -1.3
USP53-204ENST00000507906 GFRA3O60609 400 aa6.93□□□□□ -1.3
USP53-204ENST00000507906 LGR5O75473 907 aa6.93□□□□□ -1.3
USP53-204ENST00000507906 S1PR4O95977 384 aa6.93□□□□□ -1.3
USP53-204ENST00000507906 RBM25P49756 843 aaKnown RBP6.93□□□□□ -1.3
USP53-204ENST00000507906 DZIP3Q86Y13 1208 aaKnown RBP6.93□□□□□ -1.3
USP53-204ENST00000507906 CLP1Q92989 425 aaKnown RBP6.93□□□□□ -1.3
USP53-204ENST00000507906 SLC6A16Q9GZN6 736 aa6.93□□□□□ -1.3
USP53-204ENST00000507906 IL21Q9HBE4 155 aa6.93□□□□□ -1.3
USP53-204ENST00000507906 MCCD1P59942 119 aaPredicted RBP6.92□□□□□ -1.3
USP53-204ENST00000507906 CCDC27Q2M243 656 aa6.92□□□□□ -1.3
USP53-204ENST00000507906 MAP7D1Q3KQU3 841 aa6.92□□□□□ -1.3
USP53-204ENST00000507906 PCDHGA11Q9Y5H2 935 aa6.92□□□□□ -1.3
USP53-204ENST00000507906 LZTS3O60299 673 aaPredicted RBP6.91□□□□□ -1.3
USP53-204ENST00000507906 SERPINB4P48594 390 aa6.91□□□□□ -1.3
USP53-204ENST00000507906 EML3Q32P44 896 aa6.91□□□□□ -1.3
USP53-204ENST00000507906 OXLD1Q5BKU9 147 aa6.91□□□□□ -1.3
USP53-204ENST00000507906 ZNF511Q8NB15 262 aa6.91□□□□□ -1.3
USP53-204ENST00000507906 DNAAF2Q9NVR5 837 aaKnown RBP6.91□□□□□ -1.3
USP53-204ENST00000507906 SFI1A8K8P3 1242 aa6.9□□□□□ -1.3
USP53-204ENST00000507906 PPEF1O14829 653 aaPredicted RBP6.9□□□□□ -1.3
USP53-204ENST00000507906 ATP2B4P23634 1241 aa6.9□□□□□ -1.3
USP53-204ENST00000507906 GAS2L2Q8NHY3 880 aa6.9□□□□□ -1.3
USP53-204ENST00000507906 C1QTNF2Q9BXJ5 285 aa6.9□□□□□ -1.3
USP53-204ENST00000507906 DOLKQ9UPQ8 538 aa6.9□□□□□ -1.3
USP53-204ENST00000507906 FCF1Q9Y324 198 aaKnown RBP6.9□□□□□ -1.3
USP53-204ENST00000507906 ESPNB1AK53 854 aa6.89□□□□□ -1.31
USP53-204ENST00000507906 ARID4AP29374 1257 aaPredicted RBP6.89□□□□□ -1.31
USP53-204ENST00000507906 SH3BP2P78314 561 aa6.89□□□□□ -1.31
USP53-204ENST00000507906 OCLNQ16625 522 aa6.89□□□□□ -1.31
USP53-204ENST00000507906 LARGE2Q8N3Y3 721 aa6.89□□□□□ -1.31
USP53-204ENST00000507906 PRIMPOLQ96LW4 560 aa6.89□□□□□ -1.31
USP53-204ENST00000507906 NOD1Q9Y239 953 aa6.89□□□□□ -1.31
USP53-204ENST00000507906 PRMT3O60678 531 aa6.88□□□□□ -1.31
USP53-204ENST00000507906 GTF2IP78347 998 aa6.88□□□□□ -1.31
USP53-204ENST00000507906 BPHLQ86WA6 291 aaPredicted RBP6.88□□□□□ -1.31
USP53-204ENST00000507906 SIX5Q8N196 739 aa6.88□□□□□ -1.31
USP53-204ENST00000507906 CCER1Q8TC90 406 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms