RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 PARD3Q8TEW0 1356 aa16.44■□□□□ 0.22
HMGCS1-204ENST00000507293 R3HDM1Q15032 1099 aaKnown RBP16.44■□□□□ 0.22
HMGCS1-204ENST00000507293 CAMKK2Q96RR4 588 aa16.44■□□□□ 0.22
HMGCS1-204ENST00000507293 LTN1O94822 1766 aa16.43■□□□□ 0.22
HMGCS1-204ENST00000507293 SOX12O15370 315 aa16.43■□□□□ 0.22
HMGCS1-204ENST00000507293 TOM1L2Q6ZVM7 507 aa16.43■□□□□ 0.22
HMGCS1-204ENST00000507293 KCNH5Q8NCM2 988 aa16.43■□□□□ 0.22
HMGCS1-204ENST00000507293 AXIN2Q9Y2T1 843 aa16.43■□□□□ 0.22
HMGCS1-204ENST00000507293 WDR17Q8IZU2 1322 aa16.43■□□□□ 0.22
HMGCS1-204ENST00000507293 CD163L1Q9NR16 1453 aa16.42■□□□□ 0.22
HMGCS1-204ENST00000507293 ABCC6O95255 1503 aa16.42■□□□□ 0.22
HMGCS1-204ENST00000507293 ARHGEF25Q86VW2 580 aa16.42■□□□□ 0.22
HMGCS1-204ENST00000507293 OVOS2A0A0G2JMS6 1433 aa16.42■□□□□ 0.22
HMGCS1-204ENST00000507293 OVOS2A0A0J9YW53 1432 aa16.42■□□□□ 0.22
HMGCS1-204ENST00000507293 OVOS2Q6IE36 1432 aa16.42■□□□□ 0.22
HMGCS1-204ENST00000507293 RGPD3A6NKT7 1758 aaPredicted RBP16.41■□□□□ 0.22
HMGCS1-204ENST00000507293 RGPD4Q7Z3J3 1758 aa16.41■□□□□ 0.22
HMGCS1-204ENST00000507293 DDB1Q16531 1140 aa16.39■□□□□ 0.21
HMGCS1-204ENST00000507293 SRCAPQ6ZRS2 3230 aa16.39■□□□□ 0.21
HMGCS1-204ENST00000507293 CSB-PGBD3P0DP91 1061 aa16.38■□□□□ 0.21
HMGCS1-204ENST00000507293 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.38■□□□□ 0.21
HMGCS1-204ENST00000507293 TMC1Q8TDI8 760 aa16.38■□□□□ 0.21
HMGCS1-204ENST00000507293 USP31Q70CQ4 1352 aa16.38■□□□□ 0.21
HMGCS1-204ENST00000507293 C11orf95C9JLR9 678 aaPredicted RBP16.37■□□□□ 0.21
HMGCS1-204ENST00000507293 NME9Q86XW9 330 aa16.37■□□□□ 0.21
HMGCS1-204ENST00000507293 EDC4Q6P2E9 1401 aaKnown RBP16.36■□□□□ 0.21
HMGCS1-204ENST00000507293 HDGFL2Q7Z4V5 671 aaPredicted RBP16.35■□□□□ 0.21
HMGCS1-204ENST00000507293 CDCA7Q9BWT1 371 aaPredicted RBP16.35■□□□□ 0.21
HMGCS1-204ENST00000507293 CARD10Q9BWT7 1032 aa16.35■□□□□ 0.21
HMGCS1-204ENST00000507293 SLC12A5Q9H2X9 1139 aa16.35■□□□□ 0.21
HMGCS1-204ENST00000507293 A0A1W2PP64 1363 aa16.35■□□□□ 0.21
HMGCS1-204ENST00000507293 CCDC7Q96M83 1385 aa16.34■□□□□ 0.21
HMGCS1-204ENST00000507293 NBPF14Q5TI25 921 aa16.33■□□□□ 0.2
HMGCS1-204ENST00000507293 MARCH10Q8NA82 808 aaPredicted RBP16.33■□□□□ 0.2
HMGCS1-204ENST00000507293 TNS2Q63HR2 1409 aa16.33■□□□□ 0.2
HMGCS1-204ENST00000507293 BCL9O00512 1426 aa16.32■□□□□ 0.2
HMGCS1-204ENST00000507293 NHSQ6T4R5 1651 aa16.31■□□□□ 0.2
HMGCS1-204ENST00000507293 FAM208AQ9UK61 1670 aaKnown RBP16.31■□□□□ 0.2
HMGCS1-204ENST00000507293 PTF1AQ7RTS3 328 aa16.31■□□□□ 0.2
HMGCS1-204ENST00000507293 PUS7Q96PZ0 661 aaKnown RBP16.31■□□□□ 0.2
HMGCS1-204ENST00000507293 TERF2IPQ9NYB0 399 aa16.31■□□□□ 0.2
HMGCS1-204ENST00000507293 ERBB3P21860 1342 aa16.3■□□□□ 0.2
HMGCS1-204ENST00000507293 TESK2Q96S53 571 aa16.3■□□□□ 0.2
HMGCS1-204ENST00000507293 BCL11BQ9C0K0 894 aaPredicted RBP16.3■□□□□ 0.2
HMGCS1-204ENST00000507293 NINLQ9Y2I6 1382 aa16.29■□□□□ 0.2
HMGCS1-204ENST00000507293 CASZ1Q86V15 1759 aa16.29■□□□□ 0.2
HMGCS1-204ENST00000507293 ST20-MTHFSA0A0A6YYL1 179 aa16.29■□□□□ 0.2
HMGCS1-204ENST00000507293 PLSCR1O15162 318 aa16.29■□□□□ 0.2
HMGCS1-204ENST00000507293 TRIM26Q12899 539 aaPredicted RBP16.29■□□□□ 0.2
HMGCS1-204ENST00000507293 EXOC5O00471 708 aa16.28■□□□□ 0.2
HMGCS1-204ENST00000507293 NLRP2Q9NX02 1062 aa16.28■□□□□ 0.2
HMGCS1-204ENST00000507293 ANKRD24Q8TF21 1146 aa16.27■□□□□ 0.2
HMGCS1-204ENST00000507293 RGPD2P0DJD1 1756 aa16.26■□□□□ 0.19
HMGCS1-204ENST00000507293 BTAF1O14981 1849 aa16.26■□□□□ 0.19
HMGCS1-204ENST00000507293 ANO8Q9HCE9 1232 aaPredicted RBP16.25■□□□□ 0.19
HMGCS1-204ENST00000507293 KIF20BQ96Q89 1820 aa16.24■□□□□ 0.19
HMGCS1-204ENST00000507293 IL2RBP14784 551 aa16.24■□□□□ 0.19
HMGCS1-204ENST00000507293 USP47Q96K76 1375 aa16.24■□□□□ 0.19
HMGCS1-204ENST00000507293 KAT6BQ8WYB5 2073 aa16.23■□□□□ 0.19
HMGCS1-204ENST00000507293 PROM2Q8N271 834 aa16.23■□□□□ 0.19
HMGCS1-204ENST00000507293 ANKRD36BQ8N2N9 1353 aa16.23■□□□□ 0.19
HMGCS1-204ENST00000507293 KCNQ2O43526 872 aa16.22■□□□□ 0.19
HMGCS1-204ENST00000507293 SLC24A1O60721 1099 aa16.22■□□□□ 0.19
HMGCS1-204ENST00000507293 TXNRD1Q16881 649 aa16.22■□□□□ 0.19
HMGCS1-204ENST00000507293 IP6K1Q92551 441 aa16.22■□□□□ 0.19
HMGCS1-204ENST00000507293 COG3Q96JB2 828 aa16.22■□□□□ 0.19
HMGCS1-204ENST00000507293 SPON1Q9HCB6 807 aa16.22■□□□□ 0.19
HMGCS1-204ENST00000507293 LTV1Q96GA3 475 aaPredicted RBP16.21■□□□□ 0.19
HMGCS1-204ENST00000507293 ACSBG1Q96GR2 724 aa16.21■□□□□ 0.19
HMGCS1-204ENST00000507293 SHANK3Q9BYB0 1731 aa16.21■□□□□ 0.19
HMGCS1-204ENST00000507293 MYOM1P52179 1685 aa16.21■□□□□ 0.18
HMGCS1-204ENST00000507293 MAP3K19Q56UN5 1328 aa16.2■□□□□ 0.18
HMGCS1-204ENST00000507293 PAPPAQ13219 1627 aa16.2■□□□□ 0.18
HMGCS1-204ENST00000507293 DOT1LQ8TEK3 1739 aa16.2■□□□□ 0.18
HMGCS1-204ENST00000507293 PPP1R1BQ9UD71 204 aaPredicted RBP16.2■□□□□ 0.18
HMGCS1-204ENST00000507293 TMF1P82094 1093 aa16.19■□□□□ 0.18
HMGCS1-204ENST00000507293 HOXC9P31274 260 aa16.18■□□□□ 0.18
HMGCS1-204ENST00000507293 PDGFDQ9GZP0 370 aaPredicted RBP16.18■□□□□ 0.18
HMGCS1-204ENST00000507293 STK32BQ9NY57 414 aa16.18■□□□□ 0.18
HMGCS1-204ENST00000507293 FBLN1P23142 703 aa16.17■□□□□ 0.18
HMGCS1-204ENST00000507293 AMPHP49418 695 aa16.17■□□□□ 0.18
HMGCS1-204ENST00000507293 RTL1A6NKG5 1358 aa16.16■□□□□ 0.18
HMGCS1-204ENST00000507293 SLC15A2Q16348 729 aa16.15■□□□□ 0.18
HMGCS1-204ENST00000507293 GGNBP2Q9H3C7 697 aa16.15■□□□□ 0.18
HMGCS1-204ENST00000507293 MEGF6O75095 1541 aa16.14■□□□□ 0.18
HMGCS1-204ENST00000507293 FYB1O15117 783 aa16.14■□□□□ 0.17
HMGCS1-204ENST00000507293 ZBTB7AO95365 584 aa16.14■□□□□ 0.17
HMGCS1-204ENST00000507293 RRS1Q15050 365 aaKnown RBP16.14■□□□□ 0.17
HMGCS1-204ENST00000507293 DDX54Q8TDD1 881 aaKnown RBP16.14■□□□□ 0.17
HMGCS1-204ENST00000507293 LY75O60449 1722 aa16.13■□□□□ 0.17
HMGCS1-204ENST00000507293 QSER1Q2KHR3 1735 aa16.13■□□□□ 0.17
HMGCS1-204ENST00000507293 TUBGCP6Q96RT7 1819 aa16.12■□□□□ 0.17
HMGCS1-204ENST00000507293 CDCA8Q53HL2 280 aa16.12■□□□□ 0.17
HMGCS1-204ENST00000507293 SMG6Q86US8 1419 aaKnown RBP16.11■□□□□ 0.17
HMGCS1-204ENST00000507293 ATF5Q9Y2D1 282 aaPredicted RBP16.11■□□□□ 0.17
HMGCS1-204ENST00000507293 PTGER2P43116 358 aa16.1■□□□□ 0.17
HMGCS1-204ENST00000507293 ANKRD26Q9UPS8 1709 aa16.1■□□□□ 0.17
HMGCS1-204ENST00000507293 NSD3Q9BZ95 1437 aa16.1■□□□□ 0.17
HMGCS1-204ENST00000507293 NBPF6Q5VWK0 638 aa16.09■□□□□ 0.17
HMGCS1-204ENST00000507293 USHBP1Q8N6Y0 703 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms